Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
---|---|
Accession | NC_002939 |
Length | 3,814,139 |
Click here to switch to the map view.
The map label for this gene is 39997876
Identifier: 39997876
GI number: 39997876
Start: 3063713
End: 3064288
Strand: Direct
Name: 39997876
Synonym: GSU2783
Alternate gene names: NA
Gene position: 3063713-3064288 (Clockwise)
Preceding gene: 39997875
Following gene: 39997880
Centisome position: 80.33
GC content: 68.75
Gene sequence:
>576_bases ATGAGCTACCGACCCACCCGTGACGATGCCTGGAACCTGCTCGCCGAGTACGTGCCCAGCGACAACCTGCGGCGGCACGC CCTGGCCGTGGAGGCGGTGATGCGCCACATGGCACGCAAGCGGGGCGAAGATGAGGAGATGTGGGGGATTATCGGGCTGG TGCACGACATCGACTACGAGCGCCACCCGGACGAGCACTGCGCCCATGCGCCGGAGATCCTGCGTTCCCGCGGCTGGCCC GAGGAGTACATCCGGGCGGTCCTGGCCCACGGCTGGGGCCTGTGCACCGACGTGGAGCCCCTCACCGACCTGGAGAAGAC CCTCTACACCATCGACGAGCTGACGGGGCTGGTGGCGGCCGCCGCCCTGGTCCGGCCGTCCCGGAGCATCCTGGACCTGC CGGTGAAGAGCGTGCTCAAGAAGTGGAAGGACAAGGCGTTTGCCGCCGGAGCCAACCGGGGGGTCATCGAGCAGGGGGCC GCCATGCTCGGCATGGAGCCGGCCGACCTGATCGGGGAAACCATCGAGGGGATGAAACCGGCGGCCGAGGAGATCGGTCT CAGGGGCACCCTCTGA
Upstream 100 bases:
>100_bases CTACATGCTGGTGGCCCGCGACCACAGCCGCGACCGGGAGCGCGAGGCGACGGTGGCGGCCGAAGGTGCGGCGACCAATC CCTGACCCCAAGGAGACACC
Downstream 100 bases:
>100_bases CAGACTGTTGAAAAACTGGCGCAGGGACCGGATGCAAGCCGGCGGGCAGCGGAAAGCTACTGACCTGCCGGGCTGCGGCC CGCCTCCTCCAGCCGCCTGA
Product: HDIG domain-containing protein
Products: NA
Alternate protein names: Metal Dependent Phophohydrolase; HDIG Domain-Containing Protein; HDIG Domain Protein; Hydrolase; Hdig Domain Protein; HD Superfamily Hydrolase; HDIG-Domain-Containing Protein; Hydrolase Family Protein; Domain HDIG Protein; Phosphohydrolase; HAD-Superfamily Hydrolase; Metal-Dependent Phosphoesterase; HD Domain Protein; Lysyl-TRNA Synthetase
Number of amino acids: Translated: 191; Mature: 190
Protein sequence:
>191_residues MSYRPTRDDAWNLLAEYVPSDNLRRHALAVEAVMRHMARKRGEDEEMWGIIGLVHDIDYERHPDEHCAHAPEILRSRGWP EEYIRAVLAHGWGLCTDVEPLTDLEKTLYTIDELTGLVAAAALVRPSRSILDLPVKSVLKKWKDKAFAAGANRGVIEQGA AMLGMEPADLIGETIEGMKPAAEEIGLRGTL
Sequences:
>Translated_191_residues MSYRPTRDDAWNLLAEYVPSDNLRRHALAVEAVMRHMARKRGEDEEMWGIIGLVHDIDYERHPDEHCAHAPEILRSRGWP EEYIRAVLAHGWGLCTDVEPLTDLEKTLYTIDELTGLVAAAALVRPSRSILDLPVKSVLKKWKDKAFAAGANRGVIEQGA AMLGMEPADLIGETIEGMKPAAEEIGLRGTL >Mature_190_residues SYRPTRDDAWNLLAEYVPSDNLRRHALAVEAVMRHMARKRGEDEEMWGIIGLVHDIDYERHPDEHCAHAPEILRSRGWPE EYIRAVLAHGWGLCTDVEPLTDLEKTLYTIDELTGLVAAAALVRPSRSILDLPVKSVLKKWKDKAFAAGANRGVIEQGAA MLGMEPADLIGETIEGMKPAAEEIGLRGTL
Specific function: Unknown
COG id: COG2316
COG function: function code R; Predicted hydrolase (HD superfamily)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21290; Mature: 21158
Theoretical pI: Translated: 5.14; Mature: 5.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSYRPTRDDAWNLLAEYVPSDNLRRHALAVEAVMRHMARKRGEDEEMWGIIGLVHDIDYE CCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC RHPDEHCAHAPEILRSRGWPEEYIRAVLAHGWGLCTDVEPLTDLEKTLYTIDELTGLVAA CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH AALVRPSRSILDLPVKSVLKKWKDKAFAAGANRGVIEQGAAMLGMEPADLIGETIEGMKP HHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCH AAEEIGLRGTL HHHHCCCCCCC >Mature Secondary Structure SYRPTRDDAWNLLAEYVPSDNLRRHALAVEAVMRHMARKRGEDEEMWGIIGLVHDIDYE CCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC RHPDEHCAHAPEILRSRGWPEEYIRAVLAHGWGLCTDVEPLTDLEKTLYTIDELTGLVAA CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH AALVRPSRSILDLPVKSVLKKWKDKAFAAGANRGVIEQGAAMLGMEPADLIGETIEGMKP HHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCH AAEEIGLRGTL HHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA