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The map label for this gene is yrrO [H]

Identifier: 39997651

GI number: 39997651

Start: 2818455

End: 2819669

Strand: Direct

Name: yrrO [H]

Synonym: GSU2556

Alternate gene names: 39997651

Gene position: 2818455-2819669 (Clockwise)

Preceding gene: 39997650

Following gene: 39997652

Centisome position: 73.89

GC content: 67.16

Gene sequence:

>1215_bases
ATGCAGATCCCCGAACTCCTGGCCCCGGCCGGGAACCTCGAAAAACTCAAAGTGGCCGTCCACTACGGCGCCGACGCCGT
CTACCTGGGCGGTGCCCGCTTCGGACTGCGGAGCCAGGCCGACAATTTCACCCCCGCCACCATGGCCGAGGCCGTGGCCT
ATGCCCACGACCGGGGGGTGAAGGTCTACCTCACGGTCAACAGCTATCCCGACACCGACGAGCTGGAGGAACTGGACCGC
TACCTGGAAGAGGTAGCGCCGATCCCCTTCGACGCCTTCATCGCCGCCGATCCCGGGGTCATCGCCACCATCCGCCGCAT
CGTCCCGGACCGCACCATCCATCTCTCGACCCAGGCCAATACCACCACCTGGCGCAGCGCCCTCTTCTGGCAGCAGCAGG
GCATCAGCCGCATCAACCTGGCCCGGGAGATGTCCCTGGAGGCGATCCGCGAAACCCGCCGCCGCGTGTCGGCCGAACTG
GAGGTCTTTGCCCACGGCGCTCTCTGCGTGGCCTATTCGGGGCGCTGCCTCCTCTCCGCCGTCATGACCGGGCGCCATGC
CAACCGGGGGGAGTGCACCCATCCCTGCCGCTGGAGCTACGCCCTGGTGGAGGAAAGCCGGCCCGGCGAGTACTACCCGG
TCACTGAGGACGAAAACGGCACGTTCATCTTCAACTCCCGGGACCTCTGCCTCATCCGCCACATTCCCGAGCTGGTGGAG
GCGGGAGTCGACTCCCTCAAGATCGAGGGGAGAATGAAGGGAATCCACTACGTGGCGTCGGTGGTGCGGGTCTACCGGGA
GGCGCTCGACCGCTATGCCGCCGACCCCGCCGGCTACGCGTTCCGTCCCGAGTGGCTGGAGGAACTGTCCAAGGTGAGCC
ACCGGGGATACACCACCGGCTTCCTCCTGGGCCGCCCCGAGGCGGCGGACCTGGAGTACGACTCCCGTTATCTGCGCAGC
CATGACTTTCTCGCCGTGGTGGACGAGATCCTACCCGACGGCACCGCCATCCTTGCCGTCCGCAACCGCATCCGGCCAGG
CTGGACCATGGAGCTGATGGGGCCGGGCATGCGCTCGGATACCTTCAGGCTCGACACCTTCACCGACGAGAACGGGGCTC
CCCTGACCGAAGCCCACCCGAACCAACGGATCCGGACGATACTCCCCGAAGCGGCCGCCCCCTGGGATCTGCTACGGCGG
GAACGGGACGACTGA

Upstream 100 bases:

>100_bases
GTGCCCTGATCCGCCCCCATGTTCTCCCATCAAAGTGTTCTGCCGGGAACGATGACTGTGATATCATCCCGGCCACACGA
ACCTTCAGCGCGGAGCAGTC

Downstream 100 bases:

>100_bases
GGTCGCCATGGAACGGCCAACCATCGCCATCAAGGTCGATGCCGACACCTTCGTGGGGACCCGGGACGGCATCCCGCGCA
TCCTCGACATCCTCGGCCGC

Product: U32 family peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 404; Mature: 404

Protein sequence:

>404_residues
MQIPELLAPAGNLEKLKVAVHYGADAVYLGGARFGLRSQADNFTPATMAEAVAYAHDRGVKVYLTVNSYPDTDELEELDR
YLEEVAPIPFDAFIAADPGVIATIRRIVPDRTIHLSTQANTTTWRSALFWQQQGISRINLAREMSLEAIRETRRRVSAEL
EVFAHGALCVAYSGRCLLSAVMTGRHANRGECTHPCRWSYALVEESRPGEYYPVTEDENGTFIFNSRDLCLIRHIPELVE
AGVDSLKIEGRMKGIHYVASVVRVYREALDRYAADPAGYAFRPEWLEELSKVSHRGYTTGFLLGRPEAADLEYDSRYLRS
HDFLAVVDEILPDGTAILAVRNRIRPGWTMELMGPGMRSDTFRLDTFTDENGAPLTEAHPNQRIRTILPEAAAPWDLLRR
ERDD

Sequences:

>Translated_404_residues
MQIPELLAPAGNLEKLKVAVHYGADAVYLGGARFGLRSQADNFTPATMAEAVAYAHDRGVKVYLTVNSYPDTDELEELDR
YLEEVAPIPFDAFIAADPGVIATIRRIVPDRTIHLSTQANTTTWRSALFWQQQGISRINLAREMSLEAIRETRRRVSAEL
EVFAHGALCVAYSGRCLLSAVMTGRHANRGECTHPCRWSYALVEESRPGEYYPVTEDENGTFIFNSRDLCLIRHIPELVE
AGVDSLKIEGRMKGIHYVASVVRVYREALDRYAADPAGYAFRPEWLEELSKVSHRGYTTGFLLGRPEAADLEYDSRYLRS
HDFLAVVDEILPDGTAILAVRNRIRPGWTMELMGPGMRSDTFRLDTFTDENGAPLTEAHPNQRIRTILPEAAAPWDLLRR
ERDD
>Mature_404_residues
MQIPELLAPAGNLEKLKVAVHYGADAVYLGGARFGLRSQADNFTPATMAEAVAYAHDRGVKVYLTVNSYPDTDELEELDR
YLEEVAPIPFDAFIAADPGVIATIRRIVPDRTIHLSTQANTTTWRSALFWQQQGISRINLAREMSLEAIRETRRRVSAEL
EVFAHGALCVAYSGRCLLSAVMTGRHANRGECTHPCRWSYALVEESRPGEYYPVTEDENGTFIFNSRDLCLIRHIPELVE
AGVDSLKIEGRMKGIHYVASVVRVYREALDRYAADPAGYAFRPEWLEELSKVSHRGYTTGFLLGRPEAADLEYDSRYLRS
HDFLAVVDEILPDGTAILAVRNRIRPGWTMELMGPGMRSDTFRLDTFTDENGAPLTEAHPNQRIRTILPEAAAPWDLLRR
ERDD

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI1788397, Length=397, Percent_Identity=39.5465994962217, Blast_Score=258, Evalue=4e-70,
Organism=Escherichia coli, GI87081910, Length=313, Percent_Identity=35.7827476038339, Blast_Score=177, Evalue=8e-46,
Organism=Escherichia coli, GI1789548, Length=326, Percent_Identity=32.2085889570552, Blast_Score=149, Evalue=3e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR001539 [H]

Pfam domain/function: PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 45486; Mature: 45486

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIPELLAPAGNLEKLKVAVHYGADAVYLGGARFGLRSQADNFTPATMAEAVAYAHDRGV
CCCCHHHCCCCCCEEEEEEEEECCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCE
KVYLTVNSYPDTDELEELDRYLEEVAPIPFDAFIAADPGVIATIRRIVPDRTIHLSTQAN
EEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHEEECCCCHHHHHHHHCCCCEEEEEECCC
TTTWRSALFWQQQGISRINLAREMSLEAIRETRRRVSAELEVFAHGALCVAYSGRCLLSA
CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHH
VMTGRHANRGECTHPCRWSYALVEESRPGEYYPVTEDENGTFIFNSRDLCLIRHIPELVE
HHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEECCCCEEHHHHHHHHHH
AGVDSLKIEGRMKGIHYVASVVRVYREALDRYAADPAGYAFRPEWLEELSKVSHRGYTTG
CCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEE
FLLGRPEAADLEYDSRYLRSHDFLAVVDEILPDGTAILAVRNRIRPGWTMELMGPGMRSD
EEECCCCCCCCCHHHHHHHCCCHHHHHHHHCCCCEEEEEEHHCCCCCEEEEECCCCCCCC
TFRLDTFTDENGAPLTEAHPNQRIRTILPEAAAPWDLLRRERDD
CEEEEEEECCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHCCCC
>Mature Secondary Structure
MQIPELLAPAGNLEKLKVAVHYGADAVYLGGARFGLRSQADNFTPATMAEAVAYAHDRGV
CCCCHHHCCCCCCEEEEEEEEECCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCE
KVYLTVNSYPDTDELEELDRYLEEVAPIPFDAFIAADPGVIATIRRIVPDRTIHLSTQAN
EEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHEEECCCCHHHHHHHHCCCCEEEEEECCC
TTTWRSALFWQQQGISRINLAREMSLEAIRETRRRVSAELEVFAHGALCVAYSGRCLLSA
CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHH
VMTGRHANRGECTHPCRWSYALVEESRPGEYYPVTEDENGTFIFNSRDLCLIRHIPELVE
HHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEECCCCEEHHHHHHHHHH
AGVDSLKIEGRMKGIHYVASVVRVYREALDRYAADPAGYAFRPEWLEELSKVSHRGYTTG
CCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEE
FLLGRPEAADLEYDSRYLRSHDFLAVVDEILPDGTAILAVRNRIRPGWTMELMGPGMRSD
EEECCCCCCCCCHHHHHHHCCCHHHHHHHHCCCCEEEEEEHHCCCCCEEEEECCCCCCCC
TFRLDTFTDENGAPLTEAHPNQRIRTILPEAAAPWDLLRRERDD
CEEEEEEECCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]