Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
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Accession | NC_002939 |
Length | 3,814,139 |
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The map label for this gene is yhjX [H]
Identifier: 39997585
GI number: 39997585
Start: 2735710
End: 2737077
Strand: Direct
Name: yhjX [H]
Synonym: GSU2490
Alternate gene names: 39997585
Gene position: 2735710-2737077 (Clockwise)
Preceding gene: 39997584
Following gene: 39997586
Centisome position: 71.73
GC content: 66.23
Gene sequence:
>1368_bases ATGTCGGAACAAGTCAAAAACAAGGGGTGGCAAGTAGCCCTCGCCGGCACCGGGATCAACCTGGCACTCGGCGTTCTCTA CGCATGGAGTATCTTCAAGGGCGCCATCAAGACGTCAATCGAGAAGGGGGGCCCGGGGGCCTTCGACTGGGACCTGGCTT CCATCAATGACCCCTACGCGGTCTGCTGCCTGACCTTCGCCTTTGCCATGATCCTTGCCGGCAAGTGCCAGGACAAGATC GGTCCGGCCCGCACCGCCCTCATCGGCGGCCTGCTGGTGGGCATCGGCTTCACCCTCCTCTCCCAGAGCAATGCCTACAT GGCATGGGTCATGGGCTTCGGCATCCTGGCCGGCGCCGGCTTCGGCTTCGGCTACTCCGCCGCCACGCCGCCGGCCCTCA AGTGGTTCCCCTCGTCCAAGACGGGCCTCATCGCCGGAATCGTGGTGGCCGGCTTCGGCCTTGCCCCGGTTTACATCGCT CCGGTCTCCAGCTATCTCCTGGGCACCGTGGGCATCCAGCAGGCCATGCTGATCTACGCCGTCGCCTTCGCGATCGTCGT CTGCGGCCTCTCCTTCTTCCTGGTCAACCCGCCAGCCGGCTACGTGCCTGCCGACGTTCCCAAGGCCGACGGCACGGCCA AGGCGGCCCCGGCCAAGCCGGCGGTCAATGCCACGGCATCCGAGATGCTCCGCTCCGGCAAGTTCTACATTCTCTGGGTC ACCTACTTCATCGGCGCCGGCGCCGGCCTCATGGTCATCGGCAGCGTGGCCGGCATCGCCAAGAAGAGCATGGGGAGCAT GGCGTTCCTGGCAGTTGCGATCATGGCCCTTGGCAACGCGGGCGGCCGGGTCGTGGCGGGCGTCCTCTCCGACAAGATCG GCCGGATGGCGACGCTGCTCATCATGTTCGTGTTCCAGGCAGTCCTCATGTTCGCGGCCATCCCGGTCGTGGGAGCCGGG CACCCCAACGCCGTCCTCGTGGTGCTGCTGGCAACCTTCATGGGCTTCAACTACGGCGCCAACCTGGCCCTGTTCCCCTC CTTCAGCAAGGATTACTGGGGACTCAAGAACTACGGCCTCAACTACGGCATCCTGTTCACCGCCTGGGGCGTGGGCGGCT TCGTGATGGGACGCGCTTCCGAGATGCTGAACACCCAGACCGGCAGCTTCAACGCCTCCTTCATCCTGGCCGGCGCGCTG CTCTCGGTGGGCGCCCTCGTCTCCCTGGCACTGAAGCCGGCAAAGGCCGCCACCCCGGCCACCGCCGCGGCGCAGCCGGT TCCCCGCAACGACTTCATGGAGAGCTTCATGCGCGGTTGGGCCGACTTCCTCGGCTTCACCCCCTCCACCCCGCGCGGCA CCCGCTAA
Upstream 100 bases:
>100_bases AAACATAATTTTATAACAATGGTATGCAAGTTGCTCTACCTCAAACAAACGCACTTCGTTCGTCCACAGAGTCTGAACTC GTTCATAAGGAGGTAGCGCG
Downstream 100 bases:
>100_bases CCGCCGCCCGAGCGATCACACACGCAGCAGACAGAGGCCCCGTTCCGACGGGGCCTCTTTTTTTCAGCCGCCGGTCAATT CCGTTGTCCCAGTGAATCAA
Product: oxalate/formate antiporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 455; Mature: 454
Protein sequence:
>455_residues MSEQVKNKGWQVALAGTGINLALGVLYAWSIFKGAIKTSIEKGGPGAFDWDLASINDPYAVCCLTFAFAMILAGKCQDKI GPARTALIGGLLVGIGFTLLSQSNAYMAWVMGFGILAGAGFGFGYSAATPPALKWFPSSKTGLIAGIVVAGFGLAPVYIA PVSSYLLGTVGIQQAMLIYAVAFAIVVCGLSFFLVNPPAGYVPADVPKADGTAKAAPAKPAVNATASEMLRSGKFYILWV TYFIGAGAGLMVIGSVAGIAKKSMGSMAFLAVAIMALGNAGGRVVAGVLSDKIGRMATLLIMFVFQAVLMFAAIPVVGAG HPNAVLVVLLATFMGFNYGANLALFPSFSKDYWGLKNYGLNYGILFTAWGVGGFVMGRASEMLNTQTGSFNASFILAGAL LSVGALVSLALKPAKAATPATAAAQPVPRNDFMESFMRGWADFLGFTPSTPRGTR
Sequences:
>Translated_455_residues MSEQVKNKGWQVALAGTGINLALGVLYAWSIFKGAIKTSIEKGGPGAFDWDLASINDPYAVCCLTFAFAMILAGKCQDKI GPARTALIGGLLVGIGFTLLSQSNAYMAWVMGFGILAGAGFGFGYSAATPPALKWFPSSKTGLIAGIVVAGFGLAPVYIA PVSSYLLGTVGIQQAMLIYAVAFAIVVCGLSFFLVNPPAGYVPADVPKADGTAKAAPAKPAVNATASEMLRSGKFYILWV TYFIGAGAGLMVIGSVAGIAKKSMGSMAFLAVAIMALGNAGGRVVAGVLSDKIGRMATLLIMFVFQAVLMFAAIPVVGAG HPNAVLVVLLATFMGFNYGANLALFPSFSKDYWGLKNYGLNYGILFTAWGVGGFVMGRASEMLNTQTGSFNASFILAGAL LSVGALVSLALKPAKAATPATAAAQPVPRNDFMESFMRGWADFLGFTPSTPRGTR >Mature_454_residues SEQVKNKGWQVALAGTGINLALGVLYAWSIFKGAIKTSIEKGGPGAFDWDLASINDPYAVCCLTFAFAMILAGKCQDKIG PARTALIGGLLVGIGFTLLSQSNAYMAWVMGFGILAGAGFGFGYSAATPPALKWFPSSKTGLIAGIVVAGFGLAPVYIAP VSSYLLGTVGIQQAMLIYAVAFAIVVCGLSFFLVNPPAGYVPADVPKADGTAKAAPAKPAVNATASEMLRSGKFYILWVT YFIGAGAGLMVIGSVAGIAKKSMGSMAFLAVAIMALGNAGGRVVAGVLSDKIGRMATLLIMFVFQAVLMFAAIPVVGAGH PNAVLVVLLATFMGFNYGANLALFPSFSKDYWGLKNYGLNYGILFTAWGVGGFVMGRASEMLNTQTGSFNASFILAGALL SVGALVSLALKPAKAATPATAAAQPVPRNDFMESFMRGWADFLGFTPSTPRGTR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI42475555, Length=374, Percent_Identity=27.0053475935829, Blast_Score=69, Evalue=8e-12, Organism=Escherichia coli, GI1789969, Length=374, Percent_Identity=29.6791443850267, Blast_Score=147, Evalue=2e-36, Organism=Caenorhabditis elegans, GI115532490, Length=381, Percent_Identity=23.0971128608924, Blast_Score=77, Evalue=2e-14, Organism=Caenorhabditis elegans, GI115532488, Length=381, Percent_Identity=23.0971128608924, Blast_Score=77, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 - InterPro: IPR004741 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 47033; Mature: 46902
Theoretical pI: Translated: 10.01; Mature: 10.01
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEQVKNKGWQVALAGTGINLALGVLYAWSIFKGAIKTSIEKGGPGAFDWDLASINDPYA CCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH VCCLTFAFAMILAGKCQDKIGPARTALIGGLLVGIGFTLLSQSNAYMAWVMGFGILAGAG HHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC FGFGYSAATPPALKWFPSSKTGLIAGIVVAGFGLAPVYIAPVSSYLLGTVGIQQAMLIYA CCCCCCCCCCCCEEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH VAFAIVVCGLSFFLVNPPAGYVPADVPKADGTAKAAPAKPAVNATASEMLRSGKFYILWV HHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEH TYFIGAGAGLMVIGSVAGIAKKSMGSMAFLAVAIMALGNAGGRVVAGVLSDKIGRMATLL HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH IMFVFQAVLMFAAIPVVGAGHPNAVLVVLLATFMGFNYGANLALFPSFSKDYWGLKNYGL HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHCCC NYGILFTAWGVGGFVMGRASEMLNTQTGSFNASFILAGALLSVGALVSLALKPAKAATPA CEEEEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC TAAAQPVPRNDFMESFMRGWADFLGFTPSTPRGTR CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure SEQVKNKGWQVALAGTGINLALGVLYAWSIFKGAIKTSIEKGGPGAFDWDLASINDPYA CCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH VCCLTFAFAMILAGKCQDKIGPARTALIGGLLVGIGFTLLSQSNAYMAWVMGFGILAGAG HHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC FGFGYSAATPPALKWFPSSKTGLIAGIVVAGFGLAPVYIAPVSSYLLGTVGIQQAMLIYA CCCCCCCCCCCCEEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH VAFAIVVCGLSFFLVNPPAGYVPADVPKADGTAKAAPAKPAVNATASEMLRSGKFYILWV HHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEH TYFIGAGAGLMVIGSVAGIAKKSMGSMAFLAVAIMALGNAGGRVVAGVLSDKIGRMATLL HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH IMFVFQAVLMFAAIPVVGAGHPNAVLVVLLATFMGFNYGANLALFPSFSKDYWGLKNYGL HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHCCC NYGILFTAWGVGGFVMGRASEMLNTQTGSFNASFILAGALLSVGALVSLALKPAKAATPA CEEEEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC TAAAQPVPRNDFMESFMRGWADFLGFTPSTPRGTR CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8041620; 9278503 [H]