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The map label for this gene is trfA [H]

Identifier: 39997273

GI number: 39997273

Start: 2385731

End: 2386570

Strand: Direct

Name: trfA [H]

Synonym: GSU2175

Alternate gene names: 39997273

Gene position: 2385731-2386570 (Clockwise)

Preceding gene: 39997272

Following gene: 39997274

Centisome position: 62.55

GC content: 53.33

Gene sequence:

>840_bases
TTGCCTGACCACCTTCAACCGACGCTGTTCCAGGACGCCGGAAAAACACAAGCGTCCGACACGTTTCAGGAACTGCTGGC
AAGTATCGCTGCCAGACCCAAATACCTGCCAGACTGGCCGGAGAGTCACCGGGCTTTGCCCAATGAGATTCTGCGGTCGG
CGTTATTCAATTGCCGTAATAGGAACCTGCCTCGCATGTTCCTGAAGGAGGTTGAGATCGCAGTGATTGGAGATGGTCAG
GTTATTTATCGAGGGGAAGAGCTTCGGCAGGATGACGAGCTGGTCTGGATGCACCTGATGCATTTGATCAAGAAGAGCCC
GCTGGGAGAGTGCGTTGAGTTTACCCCTTATTCGTTCATCAAGGCGCTCGGATGGCCCATCAAGGGCCAAAACTATGATC
GGCTCCGGAATTGTCTGAGTCGCATGCAGGCTACGGCGCTGCGCATACAGTCCAAGCGCCTGCATAGCTTCGTCAGCATT
TCATTGATCCAGAAATTCCTTTCCAGAAACGAGCGGAACGAGAGCCTGACCCGATGGCAGGTATGGGTCGGGAAGGAGAT
GCAGTTGCTGTTCGACGAGGAGTTTCTGACCAGGGTGATGTGGGAGACCAGGCGGTCGTTACCAGACGGCATTGCTTCAA
AACTGTTCGGCTACTGGGCCAGTCATCGGAAACCGTACCCGGTTAAAGTCGAGACCCTGCTGAAGCTGTGCGGTTCCGGC
ATGCAGACAAAACACTTCAAGATTGAGCTGAAAAGGGCTCTCGATCTTCTCAAGCAATCAGGATTTCTGGAAGCATGGGA
GCTTAAGGATGAACTTGTTGTGGTTGTTCGGAGACATTGA

Upstream 100 bases:

>100_bases
AGCGTTGGAGGTCCGAAGATGTCGCTGTGTGGATCGAGGCGCGAAAAAGTGTCTGAGGGCAACACCATAGTATCAATGAG
GATGAATCGGGAGGTTCCGG

Downstream 100 bases:

>100_bases
CCTATGACCGACCTGACATTGACTTTTGACCGACTGACTATTGACCTATGGCCGACCGGTACTGACTTTTGGCCGACCGA
ACTATTGACTATTGACCGAC

Product: trfA-related protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 278

Protein sequence:

>279_residues
MPDHLQPTLFQDAGKTQASDTFQELLASIAARPKYLPDWPESHRALPNEILRSALFNCRNRNLPRMFLKEVEIAVIGDGQ
VIYRGEELRQDDELVWMHLMHLIKKSPLGECVEFTPYSFIKALGWPIKGQNYDRLRNCLSRMQATALRIQSKRLHSFVSI
SLIQKFLSRNERNESLTRWQVWVGKEMQLLFDEEFLTRVMWETRRSLPDGIASKLFGYWASHRKPYPVKVETLLKLCGSG
MQTKHFKIELKRALDLLKQSGFLEAWELKDELVVVVRRH

Sequences:

>Translated_279_residues
MPDHLQPTLFQDAGKTQASDTFQELLASIAARPKYLPDWPESHRALPNEILRSALFNCRNRNLPRMFLKEVEIAVIGDGQ
VIYRGEELRQDDELVWMHLMHLIKKSPLGECVEFTPYSFIKALGWPIKGQNYDRLRNCLSRMQATALRIQSKRLHSFVSI
SLIQKFLSRNERNESLTRWQVWVGKEMQLLFDEEFLTRVMWETRRSLPDGIASKLFGYWASHRKPYPVKVETLLKLCGSG
MQTKHFKIELKRALDLLKQSGFLEAWELKDELVVVVRRH
>Mature_278_residues
PDHLQPTLFQDAGKTQASDTFQELLASIAARPKYLPDWPESHRALPNEILRSALFNCRNRNLPRMFLKEVEIAVIGDGQV
IYRGEELRQDDELVWMHLMHLIKKSPLGECVEFTPYSFIKALGWPIKGQNYDRLRNCLSRMQATALRIQSKRLHSFVSIS
LIQKFLSRNERNESLTRWQVWVGKEMQLLFDEEFLTRVMWETRRSLPDGIASKLFGYWASHRKPYPVKVETLLKLCGSGM
QTKHFKIELKRALDLLKQSGFLEAWELKDELVVVVRRH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010751 [H]

Pfam domain/function: PF07042 TrfA [H]

EC number: NA

Molecular weight: Translated: 32693; Mature: 32562

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDHLQPTLFQDAGKTQASDTFQELLASIAARPKYLPDWPESHRALPNEILRSALFNCRN
CCCCCCCHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHHHCC
RNLPRMFLKEVEIAVIGDGQVIYRGEELRQDDELVWMHLMHLIKKSPLGECVEFTPYSFI
CCCHHHHHHHCCEEEEECCEEEECCHHHCCCHHHHHHHHHHHHHCCCCCHHHHCCHHHHH
KALGWPIKGQNYDRLRNCLSRMQATALRIQSKRLHSFVSISLIQKFLSRNERNESLTRWQ
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
VWVGKEMQLLFDEEFLTRVMWETRRSLPDGIASKLFGYWASHRKPYPVKVETLLKLCGSG
HHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCC
MQTKHFKIELKRALDLLKQSGFLEAWELKDELVVVVRRH
CCCHHHHHHHHHHHHHHHHCCCCHHHHCCCHHEEEEECC
>Mature Secondary Structure 
PDHLQPTLFQDAGKTQASDTFQELLASIAARPKYLPDWPESHRALPNEILRSALFNCRN
CCCCCCHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHHHCC
RNLPRMFLKEVEIAVIGDGQVIYRGEELRQDDELVWMHLMHLIKKSPLGECVEFTPYSFI
CCCHHHHHHHCCEEEEECCEEEECCHHHCCCHHHHHHHHHHHHHCCCCCHHHHCCHHHHH
KALGWPIKGQNYDRLRNCLSRMQATALRIQSKRLHSFVSISLIQKFLSRNERNESLTRWQ
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
VWVGKEMQLLFDEEFLTRVMWETRRSLPDGIASKLFGYWASHRKPYPVKVETLLKLCGSG
HHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCC
MQTKHFKIELKRALDLLKQSGFLEAWELKDELVVVVRRH
CCCHHHHHHHHHHHHHHHHCCCCHHHHCCCHHEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6374158 [H]