Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
---|---|
Accession | NC_002939 |
Length | 3,814,139 |
Click here to switch to the map view.
The map label for this gene is ybgG [H]
Identifier: 39996429
GI number: 39996429
Start: 1452599
End: 1453555
Strand: Direct
Name: ybgG [H]
Synonym: GSU1327
Alternate gene names: 39996429
Gene position: 1452599-1453555 (Clockwise)
Preceding gene: 39996428
Following gene: 39996430
Centisome position: 38.08
GC content: 70.53
Gene sequence:
>957_bases ATGACTGACTATGTATCGTTTTCCGCGTTTCTGGCGGAGTCCCCCGTGATCCTCGGCGAAGGGGCGGTTATCGAGCGCCT GCGCCGGGCCGGAGTGGACCTGGACCCCTGGCTGGTGAATTCGGCCCTCGTGTACGCCCCCGCCGGCCGCGCCGCCTTGG CAACCATCTGTCGCGAGTACCTGGACATCGGGGCGCGTCACGATCTGCCGCTGCTCCTGTCCACCCCCACCTGGCGGGCC AGCCGGGAGCGGATCGAGGCGGCCGGACTGGCCGGCAGTGACGTGAACGGCGACAATTTCCGGTTTCTGGACGAGCTTCG GCGGAGCTACGGCGCCTACGGCCGGAAGGTTCTCATCTGCGGCCTCATGAGCTGCCGGGGAGATGCCTACCGGCCAGCCG AGGCCCTGTCGGAGGATGAAGCCCGCGAGTTTCACTCCTGGCAGGCCGATGCCCTGGCCGCCGCCGGAGTGGATTTCCTC CTGGCCGCCACGCTACCCGCCCTGGGCGAGGCCGTGGGGCTGGCCCGGGCCATGGCGGCCACCGGCATGCCCCACGTGGT GAGCTTTGTGGTGCGGCCCGGGGGGACGCTCCTGGACGGCACGCCGCTGCGGGAGGCGGTGGCGGCCCTGGATGCCGCCG TGAGCCCCCGGCCCGTGGCCTATCTGGTGAACTGCACCCATGCCTCGTTTTTCCGGAGCGCGCTCCTGCACGAGGCCAAC TCGTCGCCCCTGGTGCGCCAACGGGTGGTGGGGCTGCTGGCCAATACCGCGGCCCTCTCACCCGAGGAACTGGACAATGC GGCCGAACTGGTGGAGGAGTCCCCCGGGACCTTCGGCCGCACCGTGGCCGCCCTTCACCGGGACCTGGGGATGAAGGTGC TGGGCGGCTGCTGCGGCACCGACGGCCGGCACATCGAATGTCTGGCGGCTGAGCTCTCCGGCTCTCCCGTCCGCTGA
Upstream 100 bases:
>100_bases CTGAGTTGCGGGCCCCCGGCCACGAACCGCTCCGGGAGGAGCTGGCGCGGCGCTGGGGCGGCCGGCTGGAACTGGCCGGG GTGGCCTGAGGAGCGAGACC
Downstream 100 bases:
>100_bases TCAGTACGACCACTTATCACACAGAGGAGGAACACCATGTCCGAATTCACCAACGTAACCATCATCCGCGAGGCCAACGT CTACTTCGACGGCGGCGTCG
Product: homocysteine S-methyltransferase domain-containing protein
Products: NA
Alternate protein names: S-methylmethionine:homocysteine methyltransferase [H]
Number of amino acids: Translated: 318; Mature: 317
Protein sequence:
>318_residues MTDYVSFSAFLAESPVILGEGAVIERLRRAGVDLDPWLVNSALVYAPAGRAALATICREYLDIGARHDLPLLLSTPTWRA SRERIEAAGLAGSDVNGDNFRFLDELRRSYGAYGRKVLICGLMSCRGDAYRPAEALSEDEAREFHSWQADALAAAGVDFL LAATLPALGEAVGLARAMAATGMPHVVSFVVRPGGTLLDGTPLREAVAALDAAVSPRPVAYLVNCTHASFFRSALLHEAN SSPLVRQRVVGLLANTAALSPEELDNAAELVEESPGTFGRTVAALHRDLGMKVLGGCCGTDGRHIECLAAELSGSPVR
Sequences:
>Translated_318_residues MTDYVSFSAFLAESPVILGEGAVIERLRRAGVDLDPWLVNSALVYAPAGRAALATICREYLDIGARHDLPLLLSTPTWRA SRERIEAAGLAGSDVNGDNFRFLDELRRSYGAYGRKVLICGLMSCRGDAYRPAEALSEDEAREFHSWQADALAAAGVDFL LAATLPALGEAVGLARAMAATGMPHVVSFVVRPGGTLLDGTPLREAVAALDAAVSPRPVAYLVNCTHASFFRSALLHEAN SSPLVRQRVVGLLANTAALSPEELDNAAELVEESPGTFGRTVAALHRDLGMKVLGGCCGTDGRHIECLAAELSGSPVR >Mature_317_residues TDYVSFSAFLAESPVILGEGAVIERLRRAGVDLDPWLVNSALVYAPAGRAALATICREYLDIGARHDLPLLLSTPTWRAS RERIEAAGLAGSDVNGDNFRFLDELRRSYGAYGRKVLICGLMSCRGDAYRPAEALSEDEAREFHSWQADALAAAGVDFLL AATLPALGEAVGLARAMAATGMPHVVSFVVRPGGTLLDGTPLREAVAALDAAVSPRPVAYLVNCTHASFFRSALLHEANS SPLVRQRVVGLLANTAALSPEELDNAAELVEESPGTFGRTVAALHRDLGMKVLGGCCGTDGRHIECLAAELSGSPVR
Specific function: Catalyzes Methyl Transfer From S-Methylmethionine Or S- Adenosylmethionine (Less Efficient) To Homocysteine, Selenohomocysteine And Less Efficiently Selenocysteine. [C]
COG id: COG2040
COG function: function code E; Homocysteine/selenocysteine methylase (S-methylmethionine-dependent)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Hcy-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003726 [H]
Pfam domain/function: PF02574 S-methyl_trans [H]
EC number: =2.1.1.10 [H]
Molecular weight: Translated: 33668; Mature: 33536
Theoretical pI: Translated: 5.21; Mature: 5.21
Prosite motif: PS50970 HCY
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDYVSFSAFLAESPVILGEGAVIERLRRAGVDLDPWLVNSALVYAPAGRAALATICREY CCCCHHHHHHHHCCCEEECCCHHHHHHHHCCCCCCHHHHCCEEEECCCCHHHHHHHHHHH LDIGARHDLPLLLSTPTWRASRERIEAAGLAGSDVNGDNFRFLDELRRSYGAYGRKVLIC HHCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHH GLMSCRGDAYRPAEALSEDEAREFHSWQADALAAAGVDFLLAATLPALGEAVGLARAMAA HHHHHCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TGMPHVVSFVVRPGGTLLDGTPLREAVAALDAAVSPRPVAYLVNCTHASFFRSALLHEAN CCCHHHHHHHHCCCCCEECCCCHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHCCC SSPLVRQRVVGLLANTAALSPEELDNAAELVEESPGTFGRTVAALHRDLGMKVLGGCCGT CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHHHHCCC DGRHIECLAAELSGSPVR CCCEEEEEEEECCCCCCC >Mature Secondary Structure TDYVSFSAFLAESPVILGEGAVIERLRRAGVDLDPWLVNSALVYAPAGRAALATICREY CCCHHHHHHHHCCCEEECCCHHHHHHHHCCCCCCHHHHCCEEEECCCCHHHHHHHHHHH LDIGARHDLPLLLSTPTWRASRERIEAAGLAGSDVNGDNFRFLDELRRSYGAYGRKVLIC HHCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHH GLMSCRGDAYRPAEALSEDEAREFHSWQADALAAAGVDFLLAATLPALGEAVGLARAMAA HHHHHCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TGMPHVVSFVVRPGGTLLDGTPLREAVAALDAAVSPRPVAYLVNCTHASFFRSALLHEAN CCCHHHHHHHHCCCCCEECCCCHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHCCC SSPLVRQRVVGLLANTAALSPEELDNAAELVEESPGTFGRTVAALHRDLGMKVLGGCCGT CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHHHHCCC DGRHIECLAAELSGSPVR CCCEEEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]