| Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
|---|---|
| Accession | NC_002939 |
| Length | 3,814,139 |
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The map label for this gene is sfrA [H]
Identifier: 39995616
GI number: 39995616
Start: 539537
End: 542071
Strand: Reverse
Name: sfrA [H]
Synonym: GSU0509
Alternate gene names: 39995616
Gene position: 542071-539537 (Counterclockwise)
Preceding gene: 39995617
Following gene: 39995606
Centisome position: 14.21
GC content: 59.45
Gene sequence:
>2535_bases ATGGTCAGTCTTACAATCGACGGGAAGGACATCACAGTAGCGAAGGAGACCACGATCCTCGATGCGGCGGCGCTCCTCGG GATCACGATACCGACCCTCTGCTGGCTCAAGAAGGTGTCGCCTACCGGTGCCTGCCGCGTCTGCGCGGTTGAGATCGAAG GGGTCGACCGGCCCATGACGGCCTGCAACACGCCGGTCAAAGACGGGATCAAGGTAACGACCCAGTCGGAGAAACTATCG AGGATTCGCCAGAAGATCATGGAACTGATGCTGGTGAACCACCCCCTCGACTGTCCCGTCTGTGATGCAGGCGGTGAATG CGATCTCCAGAATGCCTGCTATGGCCTCGGCGCTGCAAAACAGGAATACGGCGCCGTGCTTGAGCGTCGCAAAATCCGTT ACGACTGGCCCCTGATTGAGAGCGATCCTAACCGTTGCATCCTCTGCGAGAAATGCGTCAAGGTCGACCATGAAATTGTC GGCTGCAACGCCATCAGGGTAGTCAACAGGGGTGAAGCCACCATTATCGATACGGTGGACGGCAACCCTCTCAACTGCGA ATTCTGCGGCAACTGTGTGGCCGCCTGCCCCACCGGCACTCTTATCAGCAAGCCGTTCAAATTCCGCGGCCGCCCCTGGG CCTTCACGACAACGCCGAGCGTGTGTCCCTTCTGCGCTACCGGCTGCCAGATCGAATACCACAGCCGTAACGGTCGGGTG GAACGCGTAACCAGCGACGACTCGACCTACAACAGCGGCAACCTCTGCATCAATGGCCGCTTCGGCTACAGCTACATCAA TTCCCCGGATCGCCTTGCCGAGCCGATGGTGAAAGGCCAGAAAGCCGATTGGAATACGGCTATGGGAACTGCAGCAACAG CGCTCAAGCAGATCGTGGCCAGCCATGGCGCCGACGCCGTCGCGGGATTCGGTTCTCCCCGGGTCACCAACGAAGATAAC TACCTTTTCCAGAAGCTCATGCGTTCGGCGATCGGCACCGGCAACATCGATTCGGAGGCGCGCCTCGGCTTTGCCGCGAC TCAGAAGGTCCTGAGGGAAATGCTTGGCATCGCCGGTGCCAGCACTACCATTGATGCCATTGACCGAGCTACCGCTGTTC TCGTTGTCGGCTGCGACCTGAACGCCGAGGCGACCGGCATGGAGTATCGGGTCATCAAGGCAGCAACAAAGAACAATGCA AAGCTGGTTCTTGCCGCCATGCGCGACATTAAGCTCAAGAAGTTCGCCAACAGCCATCTTAAATACCGGCCGGGAAACGA AACTCTTCTCATCAATGCCCTGACCAAAGCTGTTCTCGAAGAAGGCCTGGAAAACAAGGAGTTCTGCAGCGCGAACATCA GCAATCTTTCCGACCTGACCGCGGCCCTGGCAGGAGTCTCGATTGCCGATGCCGCCGCGGCGACCGGCGTCACAGAAGCG GATCTGCGCGCAGCAGCGCGGCTTGTCGGAGGCAAGAAGGGAGTTGCCGTCATCTTCGGCGCCGAACTCATGCGTGGCGG CAATACCGACGCGGTGAAGGCTCTAATCAACCTCGCACTGATTCTTGGCGCCACTGCAGGCGATACCGGCGGGCTTTTCC CGGTGTATGAGAAGACCAATATCCGCGGTCTTCTCGATATGGGGGTTGCTCCCGACCACTTCCCCGGTCATCAGACAGAC GGCACCACCTTCGAGAAAGCGTGGGGCAAAAAACTTCCTGCCGCTGCCGGCAAGGATCTCTGGCAAATCATTGAAGGCAT CGAGCAGGGAAGCGTCAAGGCCCTCTACCTCCTCGGCTGCGACCCGGTGGCATCGTTTCCGGAAGGAGAGCGGATACGTA AGGCCCTGGAGAAGTTGGAACTCCTCATTGTCCAGGACCCATTCCCTGGTGAGGCCGCAAAAATGGCCCACGTGGTCTTC CCTTCATCCGTAGCCGCCGAGAAGAACGGAACATTCACGACCATTGACGGCAGAGTGCAACCCCTTGCCAAGGCGGTTGC TCCGTCGGGCGACGCCCGTGAGGACTGGGACATCCTTACCGAACTGTACAATCGCCTGACGGGTGAGAGCCGCATACATT CACCCGCAGCCGTGCTCGACGAAGTTGCGGCGCTCGTTCCCGCCTATGCATCTGTTGGCCGGACCGGCGGCACCATTACC GCGCAGCCGCGTTCGGGCGGCCTAGCCCTGGCGCCGGTATCCGCCAGGGCGGTTGCCGGATCACCAACGACCCTTCTGGT CGGCACCATCCTCTATCACAGCGGAACGACCACCACATGGTCTAAAAACAATCTGGAAATCATCCCCAAGGGATATATCG AGATTCATCCGAACGATGCGGCAAAGCTCGGCATTGCCGAAGGAGGTAAGGTGCGGCTGAGTGCCGGGTCGGTGAAGGTT GAAGGAACGGCGAAGATAACGCCGCGGGTTCAACCGGGGCTGCTTTTCGCACCCAGCCATTTCCGCGGCATGAACGTGAA CGCCCTTCTGTCCCGTGACGGCGGAGTTGTTCCCGTCACGGTGGAAAAAGCTTGA
Upstream 100 bases:
>100_bases TCGGCCCACGGCCGGGGCCACGGCGGCCCGGGTATCGGCAACGATCCCGGGCGTCGGTGCGTTCCCGGCCGGGAGCCTCT TATCCAGGGGTGAAACGGAT
Downstream 100 bases:
>100_bases TTCCGGGCGAACAATCGTATTCGAAACAAAAAGCCCCGCTTAACGGCGGGGCTTTTTTCATTTGGTGGGATCTTTCAAGT ATCGTTGGACTGCTGCGTTA
Product: Fe(III) reductase subunit alpha
Products: NA
Alternate protein names: NADH dehydrogenase I subunit G 2; NDH-1 subunit G 2 [H]
Number of amino acids: Translated: 844; Mature: 844
Protein sequence:
>844_residues MVSLTIDGKDITVAKETTILDAAALLGITIPTLCWLKKVSPTGACRVCAVEIEGVDRPMTACNTPVKDGIKVTTQSEKLS RIRQKIMELMLVNHPLDCPVCDAGGECDLQNACYGLGAAKQEYGAVLERRKIRYDWPLIESDPNRCILCEKCVKVDHEIV GCNAIRVVNRGEATIIDTVDGNPLNCEFCGNCVAACPTGTLISKPFKFRGRPWAFTTTPSVCPFCATGCQIEYHSRNGRV ERVTSDDSTYNSGNLCINGRFGYSYINSPDRLAEPMVKGQKADWNTAMGTAATALKQIVASHGADAVAGFGSPRVTNEDN YLFQKLMRSAIGTGNIDSEARLGFAATQKVLREMLGIAGASTTIDAIDRATAVLVVGCDLNAEATGMEYRVIKAATKNNA KLVLAAMRDIKLKKFANSHLKYRPGNETLLINALTKAVLEEGLENKEFCSANISNLSDLTAALAGVSIADAAAATGVTEA DLRAAARLVGGKKGVAVIFGAELMRGGNTDAVKALINLALILGATAGDTGGLFPVYEKTNIRGLLDMGVAPDHFPGHQTD GTTFEKAWGKKLPAAAGKDLWQIIEGIEQGSVKALYLLGCDPVASFPEGERIRKALEKLELLIVQDPFPGEAAKMAHVVF PSSVAAEKNGTFTTIDGRVQPLAKAVAPSGDAREDWDILTELYNRLTGESRIHSPAAVLDEVAALVPAYASVGRTGGTIT AQPRSGGLALAPVSARAVAGSPTTLLVGTILYHSGTTTTWSKNNLEIIPKGYIEIHPNDAAKLGIAEGGKVRLSAGSVKV EGTAKITPRVQPGLLFAPSHFRGMNVNALLSRDGGVVPVTVEKA
Sequences:
>Translated_844_residues MVSLTIDGKDITVAKETTILDAAALLGITIPTLCWLKKVSPTGACRVCAVEIEGVDRPMTACNTPVKDGIKVTTQSEKLS RIRQKIMELMLVNHPLDCPVCDAGGECDLQNACYGLGAAKQEYGAVLERRKIRYDWPLIESDPNRCILCEKCVKVDHEIV GCNAIRVVNRGEATIIDTVDGNPLNCEFCGNCVAACPTGTLISKPFKFRGRPWAFTTTPSVCPFCATGCQIEYHSRNGRV ERVTSDDSTYNSGNLCINGRFGYSYINSPDRLAEPMVKGQKADWNTAMGTAATALKQIVASHGADAVAGFGSPRVTNEDN YLFQKLMRSAIGTGNIDSEARLGFAATQKVLREMLGIAGASTTIDAIDRATAVLVVGCDLNAEATGMEYRVIKAATKNNA KLVLAAMRDIKLKKFANSHLKYRPGNETLLINALTKAVLEEGLENKEFCSANISNLSDLTAALAGVSIADAAAATGVTEA DLRAAARLVGGKKGVAVIFGAELMRGGNTDAVKALINLALILGATAGDTGGLFPVYEKTNIRGLLDMGVAPDHFPGHQTD GTTFEKAWGKKLPAAAGKDLWQIIEGIEQGSVKALYLLGCDPVASFPEGERIRKALEKLELLIVQDPFPGEAAKMAHVVF PSSVAAEKNGTFTTIDGRVQPLAKAVAPSGDAREDWDILTELYNRLTGESRIHSPAAVLDEVAALVPAYASVGRTGGTIT AQPRSGGLALAPVSARAVAGSPTTLLVGTILYHSGTTTTWSKNNLEIIPKGYIEIHPNDAAKLGIAEGGKVRLSAGSVKV EGTAKITPRVQPGLLFAPSHFRGMNVNALLSRDGGVVPVTVEKA >Mature_844_residues MVSLTIDGKDITVAKETTILDAAALLGITIPTLCWLKKVSPTGACRVCAVEIEGVDRPMTACNTPVKDGIKVTTQSEKLS RIRQKIMELMLVNHPLDCPVCDAGGECDLQNACYGLGAAKQEYGAVLERRKIRYDWPLIESDPNRCILCEKCVKVDHEIV GCNAIRVVNRGEATIIDTVDGNPLNCEFCGNCVAACPTGTLISKPFKFRGRPWAFTTTPSVCPFCATGCQIEYHSRNGRV ERVTSDDSTYNSGNLCINGRFGYSYINSPDRLAEPMVKGQKADWNTAMGTAATALKQIVASHGADAVAGFGSPRVTNEDN YLFQKLMRSAIGTGNIDSEARLGFAATQKVLREMLGIAGASTTIDAIDRATAVLVVGCDLNAEATGMEYRVIKAATKNNA KLVLAAMRDIKLKKFANSHLKYRPGNETLLINALTKAVLEEGLENKEFCSANISNLSDLTAALAGVSIADAAAATGVTEA DLRAAARLVGGKKGVAVIFGAELMRGGNTDAVKALINLALILGATAGDTGGLFPVYEKTNIRGLLDMGVAPDHFPGHQTD GTTFEKAWGKKLPAAAGKDLWQIIEGIEQGSVKALYLLGCDPVASFPEGERIRKALEKLELLIVQDPFPGEAAKMAHVVF PSSVAAEKNGTFTTIDGRVQPLAKAVAPSGDAREDWDILTELYNRLTGESRIHSPAAVLDEVAALVPAYASVGRTGGTIT AQPRSGGLALAPVSARAVAGSPTTLLVGTILYHSGTTTTWSKNNLEIIPKGYIEIHPNDAAKLGIAEGGKVRLSAGSVKV EGTAKITPRVQPGLLFAPSHFRGMNVNALLSRDGGVVPVTVEKA
Specific function: NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocat
COG id: COG3383
COG function: function code R; Uncharacterized anaerobic dehydrogenase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]
Homologues:
Organism=Homo sapiens, GI33519475, Length=413, Percent_Identity=30.9927360774818, Blast_Score=201, Evalue=2e-51, Organism=Escherichia coli, GI3868721, Length=674, Percent_Identity=29.080118694362, Blast_Score=273, Evalue=3e-74, Organism=Escherichia coli, GI145693161, Length=758, Percent_Identity=27.5725593667546, Blast_Score=219, Evalue=7e-58, Organism=Escherichia coli, GI1788534, Length=530, Percent_Identity=20.9433962264151, Blast_Score=102, Evalue=8e-23, Organism=Caenorhabditis elegans, GI17565758, Length=419, Percent_Identity=31.0262529832936, Blast_Score=197, Evalue=1e-50, Organism=Caenorhabditis elegans, GI32566231, Length=419, Percent_Identity=31.0262529832936, Blast_Score=197, Evalue=2e-50, Organism=Caenorhabditis elegans, GI193209088, Length=245, Percent_Identity=37.5510204081633, Blast_Score=175, Evalue=8e-44, Organism=Drosophila melanogaster, GI24640559, Length=409, Percent_Identity=28.6063569682152, Blast_Score=187, Evalue=2e-47, Organism=Drosophila melanogaster, GI24640557, Length=409, Percent_Identity=28.6063569682152, Blast_Score=187, Evalue=2e-47,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017896 - InterPro: IPR017900 - InterPro: IPR009010 - InterPro: IPR012675 - InterPro: IPR001041 - InterPro: IPR006657 - InterPro: IPR006656 - InterPro: IPR006963 - InterPro: IPR006655 - InterPro: IPR000283 - InterPro: IPR019574 [H]
Pfam domain/function: PF04879 Molybdop_Fe4S4; PF00384 Molybdopterin; PF01568 Molydop_binding; PF10588 NADH-G_4Fe-4S_3 [H]
EC number: =1.6.99.5 [H]
Molecular weight: Translated: 89388; Mature: 89388
Theoretical pI: Translated: 7.62; Mature: 7.62
Prosite motif: PS00641 COMPLEX1_75K_1 ; PS00642 COMPLEX1_75K_2 ; PS51085 2FE2S_FER_2 ; PS00198 4FE4S_FERREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVSLTIDGKDITVAKETTILDAAALLGITIPTLCWLKKVSPTGACRVCAVEIEGVDRPMT CEEEEECCCEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCHH ACNTPVKDGIKVTTQSEKLSRIRQKIMELMLVNHPLDCPVCDAGGECDLQNACYGLGAAK HCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCCHH QEYGAVLERRKIRYDWPLIESDPNRCILCEKCVKVDHEIVGCNAIRVVNRGEATIIDTVD HHHHHHHHHCCEEECCCCEECCCCCEEEEHHHHHCCCEEECCCEEEEEECCCEEEEECCC GNPLNCEFCGNCVAACPTGTLISKPFKFRGRPWAFTTTPSVCPFCATGCQIEYHSRNGRV CCCCCHHHHCCCHHCCCCCCHHCCCCCCCCCCEEEECCCCCCCHHCCCCEEEEECCCCEE ERVTSDDSTYNSGNLCINGRFGYSYINSPDRLAEPMVKGQKADWNTAMGTAATALKQIVA EEEECCCCCCCCCCEEEECEECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH SHGADAVAGFGSPRVTNEDNYLFQKLMRSAIGTGNIDSEARLGFAATQKVLREMLGIAGA HCCCCCEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHCCCCC STTIDAIDRATAVLVVGCDLNAEATGMEYRVIKAATKNNAKLVLAAMRDIKLKKFANSHL CHHHHHHCCCEEEEEEECCCCCCCCCCEEEEEEEECCCCCEEEEEEHHHHHHHHHHCCCC KYRPGNETLLINALTKAVLEEGLENKEFCSANISNLSDLTAALAGVSIADAAAATGVTEA EECCCCCEEEHHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHCCHHHHHHHHCCCCHH DLRAAARLVGGKKGVAVIFGAELMRGGNTDAVKALINLALILGATAGDTGGLFPVYEKTN HHHHHHHHHCCCCCEEEEEEHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCC IRGLLDMGVAPDHFPGHQTDGTTFEKAWGKKLPAAAGKDLWQIIEGIEQGSVKALYLLGC CCEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECC DPVASFPEGERIRKALEKLELLIVQDPFPGEAAKMAHVVFPSSVAAEKNGTFTTIDGRVQ CCCCCCCCHHHHHHHHHHEEEEEEECCCCCHHHHEEEEECCCHHHHCCCCCEEEECCCHH PLAKAVAPSGDAREDWDILTELYNRLTGESRIHSPAAVLDEVAALVPAYASVGRTGGTIT HHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEE AQPRSGGLALAPVSARAVAGSPTTLLVGTILYHSGTTTTWSKNNLEIIPKGYIEIHPNDA ECCCCCCEEEECCCCEEECCCCHHEEEEEHHEECCCCCEECCCCCEEEECCEEEECCCCC AKLGIAEGGKVRLSAGSVKVEGTAKITPRVQPGLLFAPSHFRGMNVNALLSRDGGVVPVT CEEECCCCCEEEEECCCEEECCEEEECCCCCCCEEECCCCCCCCCEEEEEECCCCEEEEE VEKA EECC >Mature Secondary Structure MVSLTIDGKDITVAKETTILDAAALLGITIPTLCWLKKVSPTGACRVCAVEIEGVDRPMT CEEEEECCCEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCHH ACNTPVKDGIKVTTQSEKLSRIRQKIMELMLVNHPLDCPVCDAGGECDLQNACYGLGAAK HCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCCHH QEYGAVLERRKIRYDWPLIESDPNRCILCEKCVKVDHEIVGCNAIRVVNRGEATIIDTVD HHHHHHHHHCCEEECCCCEECCCCCEEEEHHHHHCCCEEECCCEEEEEECCCEEEEECCC GNPLNCEFCGNCVAACPTGTLISKPFKFRGRPWAFTTTPSVCPFCATGCQIEYHSRNGRV CCCCCHHHHCCCHHCCCCCCHHCCCCCCCCCCEEEECCCCCCCHHCCCCEEEEECCCCEE ERVTSDDSTYNSGNLCINGRFGYSYINSPDRLAEPMVKGQKADWNTAMGTAATALKQIVA EEEECCCCCCCCCCEEEECEECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH SHGADAVAGFGSPRVTNEDNYLFQKLMRSAIGTGNIDSEARLGFAATQKVLREMLGIAGA HCCCCCEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHCCCCC STTIDAIDRATAVLVVGCDLNAEATGMEYRVIKAATKNNAKLVLAAMRDIKLKKFANSHL CHHHHHHCCCEEEEEEECCCCCCCCCCEEEEEEEECCCCCEEEEEEHHHHHHHHHHCCCC KYRPGNETLLINALTKAVLEEGLENKEFCSANISNLSDLTAALAGVSIADAAAATGVTEA EECCCCCEEEHHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHCCHHHHHHHHCCCCHH DLRAAARLVGGKKGVAVIFGAELMRGGNTDAVKALINLALILGATAGDTGGLFPVYEKTN HHHHHHHHHCCCCCEEEEEEHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCC IRGLLDMGVAPDHFPGHQTDGTTFEKAWGKKLPAAAGKDLWQIIEGIEQGSVKALYLLGC CCEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECC DPVASFPEGERIRKALEKLELLIVQDPFPGEAAKMAHVVFPSSVAAEKNGTFTTIDGRVQ CCCCCCCCHHHHHHHHHHEEEEEEECCCCCHHHHEEEEECCCHHHHCCCCCEEEECCCHH PLAKAVAPSGDAREDWDILTELYNRLTGESRIHSPAAVLDEVAALVPAYASVGRTGGTIT HHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEE AQPRSGGLALAPVSARAVAGSPTTLLVGTILYHSGTTTTWSKNNLEIIPKGYIEIHPNDA ECCCCCCEEEECCCCEEECCCCHHEEEEEHHEECCCCCEECCCCCEEEECCEEEECCCCC AKLGIAEGGKVRLSAGSVKVEGTAKITPRVQPGLLFAPSHFRGMNVNALLSRDGGVVPVT CEEECCCCCEEEEECCCEEECCEEEECCCCCCCEEECCCCCCCCCEEEEEECCCCEEEEE VEKA EECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11481432 [H]