Click here to switch to the map view.

The map label for this gene is radC [C]

Identifier: 39995494

GI number: 39995494

Start: 418326

End: 419015

Strand: Reverse

Name: radC [C]

Synonym: GSU0386

Alternate gene names: 39995494

Gene position: 419015-418326 (Counterclockwise)

Preceding gene: 39995495

Following gene: 39995492

Centisome position: 10.99

GC content: 63.77

Gene sequence:

>690_bases
ATGGCAGGCGGCATCAAGGCGTGGCCCGAGGACGAGCGGCCACGGGAAAAGCTCTTGCGGCGGGGAGCTCCGGTCCTATC
GGACGCGGAACTGCTGGCCCTCATCATCCGGACCGGTGACTCGGTGACCGGACGGAGCGCCATCGACCTGGGGCGGGCGC
TCCTTCAGGAGTGCGGCGACCTCCGCACTCTTGCCGGAGCCACCGTCAGCGAGCTCTGCGCGGTGAAGGGCATGGGGACG
GCAAAGGCAACCTCCATCAAGGCGGCCCTGGAAATGGCCTCTCGCATCAATTCCGAGCGGCTCATGATCTGCAGCGAACG
GTTCACCTCTCCCGAACAGGTCTACAATCACTACCACTATGCCTTCCGGGACCGACGCAAGGAATACTTCATGGCCCTGC
TGCTGGACGGAAAGAACCGGATCATGCGCGAGATCCAGGTTTCGGAAGGCTCCCTCAACCAGAGCATCGTTCATCCCCGC
GAGGTCTTCAACCCGGCCGTCCGGGAGTCCGCGGCCGCGGTCATCCTTGTCCACAACCACCCCACCGGTGATCCGGCCCC
GAGCCGCGAAGACCTTGAAATCACCCGCCGCCTGCGGGAAGCGGGTGACATCATGGGCATCAGGGTCCTGGACCACATCA
TCATCGGTGACGGTCGCTTCACCAGCTTTGTCTCGGCTGGATTACTCTAG

Upstream 100 bases:

>100_bases
GCCCGCTGACCCCGCTTCAATCTTTTAATTATTTTTATTTCATAGTAGAGTTTCCCTCCCGGCCCACGGTCGAGGAACAG
TGCATCCAGGGAGGGACTGC

Downstream 100 bases:

>100_bases
CCGTTGCGGCAAGGAAGAGCAGCTGTCCCGCGTGGGGTCAGCGATGCAGGAACGAGGCGATTCCCGCCTCGAAACGGCAC
GGCTCAAAGCCGAAGACGGA

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 228

Protein sequence:

>229_residues
MAGGIKAWPEDERPREKLLRRGAPVLSDAELLALIIRTGDSVTGRSAIDLGRALLQECGDLRTLAGATVSELCAVKGMGT
AKATSIKAALEMASRINSERLMICSERFTSPEQVYNHYHYAFRDRRKEYFMALLLDGKNRIMREIQVSEGSLNQSIVHPR
EVFNPAVRESAAAVILVHNHPTGDPAPSREDLEITRRLREAGDIMGIRVLDHIIIGDGRFTSFVSAGLL

Sequences:

>Translated_229_residues
MAGGIKAWPEDERPREKLLRRGAPVLSDAELLALIIRTGDSVTGRSAIDLGRALLQECGDLRTLAGATVSELCAVKGMGT
AKATSIKAALEMASRINSERLMICSERFTSPEQVYNHYHYAFRDRRKEYFMALLLDGKNRIMREIQVSEGSLNQSIVHPR
EVFNPAVRESAAAVILVHNHPTGDPAPSREDLEITRRLREAGDIMGIRVLDHIIIGDGRFTSFVSAGLL
>Mature_228_residues
AGGIKAWPEDERPREKLLRRGAPVLSDAELLALIIRTGDSVTGRSAIDLGRALLQECGDLRTLAGATVSELCAVKGMGTA
KATSIKAALEMASRINSERLMICSERFTSPEQVYNHYHYAFRDRRKEYFMALLLDGKNRIMREIQVSEGSLNQSIVHPRE
VFNPAVRESAAAVILVHNHPTGDPAPSREDLEITRRLREAGDIMGIRVLDHIIIGDGRFTSFVSAGLL

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family

Homologues:

Organism=Escherichia coli, GI87082300, Length=216, Percent_Identity=36.5740740740741, Blast_Score=145, Evalue=2e-36,
Organism=Escherichia coli, GI1788997, Length=122, Percent_Identity=40.9836065573771, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI2367100, Length=103, Percent_Identity=42.7184466019417, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1788312, Length=103, Percent_Identity=42.7184466019417, Blast_Score=89, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y386_GEOSL (Q74G62)

Other databases:

- EMBL:   AE017180
- RefSeq:   NP_951445.1
- ProteinModelPortal:   Q74G62
- SMR:   Q74G62
- GeneID:   2686635
- GenomeReviews:   AE017180_GR
- KEGG:   gsu:GSU0386
- NMPDR:   fig|243231.1.peg.383
- TIGR:   GSU0386
- HOGENOM:   HBG751042
- OMA:   LDHLILG
- ProtClustDB:   PRK00024
- BioCyc:   GSUL243231:GSU_0386-MONOMER
- InterPro:   IPR003583
- InterPro:   IPR010994
- InterPro:   IPR001405
- SMART:   SM00278
- TIGRFAMs:   TIGR00608

Pfam domain/function: PF04002 DUF2466; SSF47781 RuvA_2_like

EC number: NA

Molecular weight: Translated: 25278; Mature: 25147

Theoretical pI: Translated: 8.10; Mature: 8.10

Prosite motif: PS01302 UPF0758

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGGIKAWPEDERPREKLLRRGAPVLSDAELLALIIRTGDSVTGRSAIDLGRALLQECGD
CCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCH
LRTLAGATVSELCAVKGMGTAKATSIKAALEMASRINSERLMICSERFTSPEQVYNHYHY
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEHHHCCCHHHHHHHHHH
AFRDRRKEYFMALLLDGKNRIMREIQVSEGSLNQSIVHPREVFNPAVRESAAAVILVHNH
HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHCCCHHHHHCHHHHCCCEEEEEEECC
PTGDPAPSREDLEITRRLREAGDIMGIRVLDHIIIGDGRFTSFVSAGLL
CCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHCCC
>Mature Secondary Structure 
AGGIKAWPEDERPREKLLRRGAPVLSDAELLALIIRTGDSVTGRSAIDLGRALLQECGD
CCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCH
LRTLAGATVSELCAVKGMGTAKATSIKAALEMASRINSERLMICSERFTSPEQVYNHYHY
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEHHHCCCHHHHHHHHHH
AFRDRRKEYFMALLLDGKNRIMREIQVSEGSLNQSIVHPREVFNPAVRESAAAVILVHNH
HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHCCCHHHHHCHHHHCCCEEEEEEECC
PTGDPAPSREDLEITRRLREAGDIMGIRVLDHIIIGDGRFTSFVSAGLL
CCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA