The gene/protein map for NC_002939 is currently unavailable.
Definition Geobacter sulfurreducens PCA chromosome, complete genome.
Accession NC_002939
Length 3,814,139

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The map label for this gene is ydfG [H]

Identifier: 39995307

GI number: 39995307

Start: 208179

End: 208943

Strand: Reverse

Name: ydfG [H]

Synonym: GSU0197

Alternate gene names: 39995307

Gene position: 208943-208179 (Counterclockwise)

Preceding gene: 39995309

Following gene: 39995306

Centisome position: 5.48

GC content: 67.71

Gene sequence:

>765_bases
ATGAGCAGAACGGTATTCATCACCGGGGCGTCGGCGGGGTTCGGCGCGGCATGCGCCCGGCTCTTCGCCGACAGGGGAGA
CCGGCTGGTTCTGGCGGCCCGCCGGGAGGAACCGCTCCTGGCGCTCAGGGACGAATTGGCGCCGCGGACGGAGGTGCACG
CCGTCACCCTTGACGTGCGGCGGCGCAAGGCGGTGCAGGATGCGATTGAGGGGCTGCCCGACGCTTTCAGCCAAATCGAC
ATCCTCGTCAACAACGCGGGGCTCGCGCTGGGACTGGAGCCGGCCCACGAGACGAACCCGGACGACTGGGACGCCATGGT
CGACACCAACATCAAGGGGCTGATCTACTGCACCCGCTTTCTCCTTCCGGGCATGGTGGCCCGCAACCGGGGACATATCG
TCAACATCGGGTCGGTGGCCGGTTCCTGGCCCTATCCCGGCGGCAACGTCTACGGGGGCACCAAGGCGTTCGTGGAGCAG
TTTTCCCGTAACCTCCGGGCCGATCTGCTGGGGAAGCAGGTGCGGGTCACCTGCCTGGCGCCGGGGATGGCCGAAACCGA
GTTCTCCATGGTCCGCTTCAAGGGCGATGCGGAACGGGCGGCCCAGGTCTACGCCGGGACCCAGGCCCTCACGGCCGAGG
ACATCGCGGGCATCGTCGCCTGGGTGACGGAACTCCCGCCCCATGTGAACGTCAACGCCCTGGAGGTCATGTCGATCTAT
CAGTCGTGGGGGCCGCTGGCGGTCCATCGGGATGGGGCGAACTGA

Upstream 100 bases:

>100_bases
TGCCTGGCCCGAAACGCCGGGAATATTCATCAGTGGCTTGCGCACCGCGAAAATACGGTGCATAGTCTCTGGCATCACTG
CAACCTCAGGGGAGGATCAC

Downstream 100 bases:

>100_bases
CCCCCCGCCCGCCCGTATCGCCGCACTGCATTATCACCGCATCCCGCGCCGGGATGCGTACGCTACGGAGGAAACTAATC
GTGTCAGAAACATCACCTCA

Product: short chain dehydrogenase/reductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 253

Protein sequence:

>254_residues
MSRTVFITGASAGFGAACARLFADRGDRLVLAARREEPLLALRDELAPRTEVHAVTLDVRRRKAVQDAIEGLPDAFSQID
ILVNNAGLALGLEPAHETNPDDWDAMVDTNIKGLIYCTRFLLPGMVARNRGHIVNIGSVAGSWPYPGGNVYGGTKAFVEQ
FSRNLRADLLGKQVRVTCLAPGMAETEFSMVRFKGDAERAAQVYAGTQALTAEDIAGIVAWVTELPPHVNVNALEVMSIY
QSWGPLAVHRDGAN

Sequences:

>Translated_254_residues
MSRTVFITGASAGFGAACARLFADRGDRLVLAARREEPLLALRDELAPRTEVHAVTLDVRRRKAVQDAIEGLPDAFSQID
ILVNNAGLALGLEPAHETNPDDWDAMVDTNIKGLIYCTRFLLPGMVARNRGHIVNIGSVAGSWPYPGGNVYGGTKAFVEQ
FSRNLRADLLGKQVRVTCLAPGMAETEFSMVRFKGDAERAAQVYAGTQALTAEDIAGIVAWVTELPPHVNVNALEVMSIY
QSWGPLAVHRDGAN
>Mature_253_residues
SRTVFITGASAGFGAACARLFADRGDRLVLAARREEPLLALRDELAPRTEVHAVTLDVRRRKAVQDAIEGLPDAFSQIDI
LVNNAGLALGLEPAHETNPDDWDAMVDTNIKGLIYCTRFLLPGMVARNRGHIVNIGSVAGSWPYPGGNVYGGTKAFVEQF
SRNLRADLLGKQVRVTCLAPGMAETEFSMVRFKGDAERAAQVYAGTQALTAEDIAGIVAWVTELPPHVNVNALEVMSIYQ
SWGPLAVHRDGAN

Specific function: Catalyzes the NADP-dependent oxidation of L-allo- threonine and L-serine [H]

COG id: COG4221

COG function: function code R; Short-chain alcohol dehydrogenase of unknown specificity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI109715829, Length=249, Percent_Identity=30.9236947791165, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI20149619, Length=202, Percent_Identity=33.1683168316832, Blast_Score=104, Evalue=7e-23,
Organism=Homo sapiens, GI4557649, Length=192, Percent_Identity=32.2916666666667, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI150247226, Length=186, Percent_Identity=36.5591397849462, Blast_Score=92, Evalue=7e-19,
Organism=Homo sapiens, GI7705855, Length=192, Percent_Identity=30.7291666666667, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI22507405, Length=186, Percent_Identity=33.8709677419355, Blast_Score=88, Evalue=7e-18,
Organism=Homo sapiens, GI40548397, Length=189, Percent_Identity=31.2169312169312, Blast_Score=88, Evalue=9e-18,
Organism=Homo sapiens, GI214010158, Length=189, Percent_Identity=31.2169312169312, Blast_Score=88, Evalue=9e-18,
Organism=Homo sapiens, GI214010156, Length=189, Percent_Identity=31.2169312169312, Blast_Score=88, Evalue=9e-18,
Organism=Homo sapiens, GI22758144, Length=189, Percent_Identity=31.2169312169312, Blast_Score=88, Evalue=9e-18,
Organism=Homo sapiens, GI157739938, Length=186, Percent_Identity=31.1827956989247, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI19743808, Length=204, Percent_Identity=32.3529411764706, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI32483357, Length=228, Percent_Identity=28.0701754385965, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI40254992, Length=190, Percent_Identity=31.0526315789474, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI19923817, Length=197, Percent_Identity=26.3959390862944, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI226371731, Length=192, Percent_Identity=29.6875, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI210032110, Length=193, Percent_Identity=32.1243523316062, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI5031737, Length=228, Percent_Identity=26.7543859649123, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI7706318, Length=170, Percent_Identity=29.4117647058824, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI142976729, Length=192, Percent_Identity=28.6458333333333, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI31542939, Length=193, Percent_Identity=27.979274611399, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI7657478, Length=207, Percent_Identity=31.4009661835749, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI33667109, Length=191, Percent_Identity=26.7015706806283, Blast_Score=71, Evalue=7e-13,
Organism=Homo sapiens, GI66933014, Length=212, Percent_Identity=27.3584905660377, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI40807363, Length=196, Percent_Identity=30.1020408163265, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI119392083, Length=207, Percent_Identity=30.4347826086957, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI223718074, Length=206, Percent_Identity=32.0388349514563, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI1787820, Length=247, Percent_Identity=55.8704453441296, Blast_Score=281, Evalue=2e-77,
Organism=Escherichia coli, GI1787335, Length=239, Percent_Identity=29.7071129707113, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI87082100, Length=189, Percent_Identity=37.037037037037, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI1788459, Length=230, Percent_Identity=25.6521739130435, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1789208, Length=236, Percent_Identity=26.271186440678, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1790717, Length=198, Percent_Identity=23.7373737373737, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI87082160, Length=193, Percent_Identity=25.9067357512953, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI2367175, Length=228, Percent_Identity=25.4385964912281, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17560676, Length=201, Percent_Identity=28.8557213930348, Blast_Score=94, Evalue=8e-20,
Organism=Caenorhabditis elegans, GI17559104, Length=244, Percent_Identity=28.2786885245902, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17560332, Length=241, Percent_Identity=29.4605809128631, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17562904, Length=204, Percent_Identity=31.8627450980392, Blast_Score=91, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI17560150, Length=192, Percent_Identity=31.25, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17562908, Length=194, Percent_Identity=30.4123711340206, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17562910, Length=240, Percent_Identity=26.6666666666667, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI71994600, Length=201, Percent_Identity=27.8606965174129, Blast_Score=87, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI71994604, Length=187, Percent_Identity=28.3422459893048, Blast_Score=87, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI193204405, Length=195, Percent_Identity=29.7435897435897, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17538486, Length=210, Percent_Identity=29.5238095238095, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17565030, Length=243, Percent_Identity=28.3950617283951, Blast_Score=84, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI193203117, Length=183, Percent_Identity=33.879781420765, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI193203115, Length=183, Percent_Identity=33.879781420765, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17538480, Length=194, Percent_Identity=30.4123711340206, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17562990, Length=200, Percent_Identity=30.5, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17560220, Length=195, Percent_Identity=29.2307692307692, Blast_Score=80, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17562906, Length=194, Percent_Identity=27.8350515463918, Blast_Score=80, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI17531453, Length=188, Percent_Identity=27.6595744680851, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17508895, Length=201, Percent_Identity=29.3532338308458, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17551412, Length=219, Percent_Identity=28.310502283105, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17563726, Length=200, Percent_Identity=28.5, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17561402, Length=227, Percent_Identity=25.9911894273128, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI72000259, Length=203, Percent_Identity=27.5862068965517, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17544670, Length=199, Percent_Identity=27.6381909547739, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17555612, Length=207, Percent_Identity=28.9855072463768, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI25152911, Length=206, Percent_Identity=28.6407766990291, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=228, Percent_Identity=43.859649122807, Blast_Score=186, Evalue=4e-48,
Organism=Saccharomyces cerevisiae, GI6322227, Length=195, Percent_Identity=26.6666666666667, Blast_Score=79, Evalue=8e-16,
Organism=Saccharomyces cerevisiae, GI6319635, Length=198, Percent_Identity=29.2929292929293, Blast_Score=74, Evalue=3e-14,
Organism=Saccharomyces cerevisiae, GI6322226, Length=197, Percent_Identity=28.4263959390863, Blast_Score=70, Evalue=5e-13,
Organism=Saccharomyces cerevisiae, GI6322067, Length=180, Percent_Identity=28.3333333333333, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI116007236, Length=244, Percent_Identity=32.3770491803279, Blast_Score=112, Evalue=2e-25,
Organism=Drosophila melanogaster, GI21358495, Length=206, Percent_Identity=31.5533980582524, Blast_Score=111, Evalue=5e-25,
Organism=Drosophila melanogaster, GI24641388, Length=253, Percent_Identity=30.4347826086957, Blast_Score=105, Evalue=3e-23,
Organism=Drosophila melanogaster, GI24648693, Length=245, Percent_Identity=32.2448979591837, Blast_Score=103, Evalue=9e-23,
Organism=Drosophila melanogaster, GI21355889, Length=245, Percent_Identity=32.2448979591837, Blast_Score=103, Evalue=9e-23,
Organism=Drosophila melanogaster, GI28571387, Length=249, Percent_Identity=31.3253012048193, Blast_Score=102, Evalue=3e-22,
Organism=Drosophila melanogaster, GI281364494, Length=247, Percent_Identity=29.9595141700405, Blast_Score=102, Evalue=4e-22,
Organism=Drosophila melanogaster, GI23397609, Length=188, Percent_Identity=34.5744680851064, Blast_Score=101, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24640442, Length=192, Percent_Identity=31.25, Blast_Score=99, Evalue=2e-21,
Organism=Drosophila melanogaster, GI21357041, Length=191, Percent_Identity=32.4607329842932, Blast_Score=97, Evalue=9e-21,
Organism=Drosophila melanogaster, GI24641232, Length=247, Percent_Identity=31.5789473684211, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24644339, Length=188, Percent_Identity=32.4468085106383, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24584748, Length=186, Percent_Identity=31.1827956989247, Blast_Score=94, Evalue=7e-20,
Organism=Drosophila melanogaster, GI161076933, Length=183, Percent_Identity=31.6939890710383, Blast_Score=94, Evalue=8e-20,
Organism=Drosophila melanogaster, GI24663911, Length=246, Percent_Identity=28.0487804878049, Blast_Score=94, Evalue=9e-20,
Organism=Drosophila melanogaster, GI28571526, Length=191, Percent_Identity=32.9842931937173, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24648944, Length=237, Percent_Identity=30.379746835443, Blast_Score=91, Evalue=8e-19,
Organism=Drosophila melanogaster, GI28574402, Length=189, Percent_Identity=31.2169312169312, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24584744, Length=189, Percent_Identity=31.2169312169312, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24643142, Length=188, Percent_Identity=30.8510638297872, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI116007234, Length=253, Percent_Identity=29.2490118577075, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI116007238, Length=196, Percent_Identity=32.1428571428571, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI21355631, Length=169, Percent_Identity=28.9940828402367, Blast_Score=78, Evalue=7e-15,
Organism=Drosophila melanogaster, GI21355319, Length=223, Percent_Identity=24.6636771300448, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI45553409, Length=199, Percent_Identity=28.1407035175879, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24647948, Length=199, Percent_Identity=28.1407035175879, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24647946, Length=199, Percent_Identity=28.1407035175879, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI24580925, Length=206, Percent_Identity=28.1553398058252, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI21357673, Length=142, Percent_Identity=33.0985915492958, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24584752, Length=187, Percent_Identity=29.9465240641711, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI116007232, Length=184, Percent_Identity=30.9782608695652, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 27441; Mature: 27309

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MSRTVFITGASAGFGAACARLFADRGDRLVLAARREEPLLALRDELAPRTEVHAVTLDVR
CCCEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCCEEEEEEEHHH
RRKAVQDAIEGLPDAFSQIDILVNNAGLALGLEPAHETNPDDWDAMVDTNIKGLIYCTRF
HHHHHHHHHHCCHHHHHHEEEEEECCCEEEECCCCCCCCCCCCHHHHCCCCHHHHHHHHH
LLPGMVARNRGHIVNIGSVAGSWPYPGGNVYGGTKAFVEQFSRNLRADLLGKQVRVTCLA
HHCCHHHCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEC
PGMAETEFSMVRFKGDAERAAQVYAGTQALTAEDIAGIVAWVTELPPHVNVNALEVMSIY
CCCCCCCEEEEEECCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
QSWGPLAVHRDGAN
HCCCCEEEECCCCC
>Mature Secondary Structure 
SRTVFITGASAGFGAACARLFADRGDRLVLAARREEPLLALRDELAPRTEVHAVTLDVR
CCEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCCEEEEEEEHHH
RRKAVQDAIEGLPDAFSQIDILVNNAGLALGLEPAHETNPDDWDAMVDTNIKGLIYCTRF
HHHHHHHHHHCCHHHHHHEEEEEECCCEEEECCCCCCCCCCCCHHHHCCCCHHHHHHHHH
LLPGMVARNRGHIVNIGSVAGSWPYPGGNVYGGTKAFVEQFSRNLRADLLGKQVRVTCLA
HHCCHHHCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEC
PGMAETEFSMVRFKGDAERAAQVYAGTQALTAEDIAGIVAWVTELPPHVNVNALEVMSIY
CCCCCCCEEEEEECCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
QSWGPLAVHRDGAN
HCCCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]