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The map label for this gene is yhgF [C]

Identifier: 38234105

GI number: 38234105

Start: 1549049

End: 1551325

Strand: Reverse

Name: yhgF [C]

Synonym: DIP1528

Alternate gene names: 38234105

Gene position: 1551325-1549049 (Counterclockwise)

Preceding gene: 38234106

Following gene: 38234104

Centisome position: 62.34

GC content: 51.12

Gene sequence:

>2277_bases
ATGATTGCAGCTACCATTGCCAAAGAACTTGGTGTGAAACAATCCCAGATTGAAACGGCGCTGACATTGCTTGCTGAGGG
CAATACGGTGCCGTTTATTGCTCGCTACCGAAAGGAAGCGACAGGGGGACTCGATGATTCGCAGCTTCGTATCATCGAAG
AGCGTGCTTCGTATTTGCGTGAATTAGAAGAACGCAAGCACAGTATTGCGGAAGCAATTGAGGAACAAGGCAAGCTGACC
GATGAGCTGCGTCGCAAGATTTTTGAGTGCGATACCAAGGCGCGACTGGAAGATCTCTATCTTCCTTACAAAAAACGCCG
TAAAACTAAGGCTGATAACGCACGCGAAGCTGGTCTTGAAGCACTGGTTGATGAGCTCATCGCGCATCCAAGCGCTGATT
CCGAGCAGCGCGCTCAGCCGTATATAACTGCTGGTTTCGAGGACTCCAAGAAGGTACTTGAAGGTGCACGCGCCATCCTT
GTCGATCGATTCGCCACGGATGCTGATCTCGTAGGTGATGTGCGTGAACGTATGTACTCCACCGGAACCATGCGTGCGGG
AGTCGTCGCCGGAAAAGAAACTGAGGGGGCGAAATTCAAAGACTATTTTGAGTTTTCTGAGGCCTTTGACTCGCTGCCAA
GTCACCGCATTTTGGCGCTGCTCAGGGGTGAAAACGAAGGCGTTTTGCAGCTCGATCTGGATGCCGGAGATGATGAAATC
TATCAAGGCATGATCGCTGATCGTTTTAAACTAGACACCAATTCTGCATGGCTGGCTCAAGCTATTCGCTGGGGGTGGCG
TACTAAGCTGCAGGTTTCTGCTGCCTTAGATGTTCGTATGAGGTTGAAGGAAAAAGCGGAGGCCGGCGCTCTCGAGGTGT
TTGCGCGAAACCTTCGCGACGTCCTCCTAGCTGCACCAGCAGGACAGCGTGCGACACTTGGACTCGATCCTGGCTATCGC
AATGGAGTGAAATGTGCTGTGGTAGATGCCACCGGAAAAGTACTCGATACGGTGATCGTTTACCCGCATCAGCCACAAAA
CCAGTGGACCCAAGCAGTGCAGACGCTTGCTTCTGCATGTGCGACACATCATGTTGATCTGATGGCTATCGGTAATGGCA
CTGCTTCTCGTGAGACTGAAAAGTTGGCGCACGAAGTAGCGGATCTGTTGAAAAAGGCTGGGGGAGCACGCCCTACGCCG
GTGGTTGTTTCTGAAGCTGGTGCTTCGGTGTATTCAGCGTCTGAGGCTGCTGCACGGGAGTTCCCAGATATGGATGTTTC
GCTTCGTGGCGCAGTTTCTATTGCGCGTAGACTTCAAGATCCTCTGGCCGAGTTGGTCAAGATTGATCCGAAAGCGATCG
GAGTGGGTCAGTATCAGCACGATGTAAACCAAACGGCTTTGGCGAAGACGCTTGATGCAGTGGTTGAAGATGCGGTTAAT
GCAGTAGGTGTTGATCTCAATACTGCCTCGGTTCCTTTGCTTGCTAGGGTAGCGGGTGTCAGCCCAACCATTGCAGAAAA
TATTGTCCATTATCGTGATGAACATGGTGCCTTTGTCAACCGTACAGCCTTGAAAAAGGTGCCACGGTTAGGTCCAAAGG
CGTTTGAGCAGTGCGCAGGATTCTTGCGGATTTCAGGTGGCAAGGATCCACTCGATGCCTCTGCTGTTCACCCAGAGGCT
TATCCAGTTGTTCGTAAAATGTCCGAAGCTACGGGGCTTTCTGTGGAAAAGTTGATCGGAAACTCCCACGTTTTGTCTTC
GCTTCGTCCGTCGGATTTTGCTGATGAGCGCTTTGGTATTCCGACCATCACTGACATTGTTGCGGAGTTGGATAAGCCGG
GTCGTGATCCACGCCCAGAATTTAAGACGGCGACTTTTAAAGAAGGAATCGAAAATATTTCAGATCTTAAACCTGGAATG
GTTTTGGAAGGAACCGTGACAAATGTTGCTGCATTTGGCGCATTCGTAGATGTCGGAGTTCATCAAGATGGGCTCGTGCA
CGTATCGGCACTGTCAGACTCTTTCGTCTCTGATCCCCATCAGTTTGTTCATTCCGGTCAAGTGGTGCGAGTCAAGGTGG
TTGATGTTGACACACAACGCAAGCGAATCGGATTAACAATGAGGCTTAACGACGACCCCGCAAAGCCGCGCCAGCGTTCC
GAAACTCGGGAACGTTCGGGTGCAAAACAGAAGCGATCGGGTAGTAAGACTAAAAATAGCCCCGCTGCAAACGGATCTCT
TGCAGATGCGTTGAAACGTGCAGGATTTGGCCATTAG

Upstream 100 bases:

>100_bases
TGGTACGGGACCTCGTTAGTAGGTGAGATCGAACCAAGTGTTACTGCTGCGTGCGCATGGCAGGCAGATGTGTAACTAGG
CGGCTGCTAGGATTGTTCGA

Downstream 100 bases:

>100_bases
ATTTTCTGCGCGGATTAACTTGAAATATCAGTTTTTCACTGGCATACTTTTTCAAGTTGTCTGTCTCTGGTAGAGACGGC
TGCTTTCATGTCTCGGGCAC

Product: putative transcriptional accessory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 758; Mature: 758

Protein sequence:

>758_residues
MIAATIAKELGVKQSQIETALTLLAEGNTVPFIARYRKEATGGLDDSQLRIIEERASYLRELEERKHSIAEAIEEQGKLT
DELRRKIFECDTKARLEDLYLPYKKRRKTKADNAREAGLEALVDELIAHPSADSEQRAQPYITAGFEDSKKVLEGARAIL
VDRFATDADLVGDVRERMYSTGTMRAGVVAGKETEGAKFKDYFEFSEAFDSLPSHRILALLRGENEGVLQLDLDAGDDEI
YQGMIADRFKLDTNSAWLAQAIRWGWRTKLQVSAALDVRMRLKEKAEAGALEVFARNLRDVLLAAPAGQRATLGLDPGYR
NGVKCAVVDATGKVLDTVIVYPHQPQNQWTQAVQTLASACATHHVDLMAIGNGTASRETEKLAHEVADLLKKAGGARPTP
VVVSEAGASVYSASEAAAREFPDMDVSLRGAVSIARRLQDPLAELVKIDPKAIGVGQYQHDVNQTALAKTLDAVVEDAVN
AVGVDLNTASVPLLARVAGVSPTIAENIVHYRDEHGAFVNRTALKKVPRLGPKAFEQCAGFLRISGGKDPLDASAVHPEA
YPVVRKMSEATGLSVEKLIGNSHVLSSLRPSDFADERFGIPTITDIVAELDKPGRDPRPEFKTATFKEGIENISDLKPGM
VLEGTVTNVAAFGAFVDVGVHQDGLVHVSALSDSFVSDPHQFVHSGQVVRVKVVDVDTQRKRIGLTMRLNDDPAKPRQRS
ETRERSGAKQKRSGSKTKNSPAANGSLADALKRAGFGH

Sequences:

>Translated_758_residues
MIAATIAKELGVKQSQIETALTLLAEGNTVPFIARYRKEATGGLDDSQLRIIEERASYLRELEERKHSIAEAIEEQGKLT
DELRRKIFECDTKARLEDLYLPYKKRRKTKADNAREAGLEALVDELIAHPSADSEQRAQPYITAGFEDSKKVLEGARAIL
VDRFATDADLVGDVRERMYSTGTMRAGVVAGKETEGAKFKDYFEFSEAFDSLPSHRILALLRGENEGVLQLDLDAGDDEI
YQGMIADRFKLDTNSAWLAQAIRWGWRTKLQVSAALDVRMRLKEKAEAGALEVFARNLRDVLLAAPAGQRATLGLDPGYR
NGVKCAVVDATGKVLDTVIVYPHQPQNQWTQAVQTLASACATHHVDLMAIGNGTASRETEKLAHEVADLLKKAGGARPTP
VVVSEAGASVYSASEAAAREFPDMDVSLRGAVSIARRLQDPLAELVKIDPKAIGVGQYQHDVNQTALAKTLDAVVEDAVN
AVGVDLNTASVPLLARVAGVSPTIAENIVHYRDEHGAFVNRTALKKVPRLGPKAFEQCAGFLRISGGKDPLDASAVHPEA
YPVVRKMSEATGLSVEKLIGNSHVLSSLRPSDFADERFGIPTITDIVAELDKPGRDPRPEFKTATFKEGIENISDLKPGM
VLEGTVTNVAAFGAFVDVGVHQDGLVHVSALSDSFVSDPHQFVHSGQVVRVKVVDVDTQRKRIGLTMRLNDDPAKPRQRS
ETRERSGAKQKRSGSKTKNSPAANGSLADALKRAGFGH
>Mature_758_residues
MIAATIAKELGVKQSQIETALTLLAEGNTVPFIARYRKEATGGLDDSQLRIIEERASYLRELEERKHSIAEAIEEQGKLT
DELRRKIFECDTKARLEDLYLPYKKRRKTKADNAREAGLEALVDELIAHPSADSEQRAQPYITAGFEDSKKVLEGARAIL
VDRFATDADLVGDVRERMYSTGTMRAGVVAGKETEGAKFKDYFEFSEAFDSLPSHRILALLRGENEGVLQLDLDAGDDEI
YQGMIADRFKLDTNSAWLAQAIRWGWRTKLQVSAALDVRMRLKEKAEAGALEVFARNLRDVLLAAPAGQRATLGLDPGYR
NGVKCAVVDATGKVLDTVIVYPHQPQNQWTQAVQTLASACATHHVDLMAIGNGTASRETEKLAHEVADLLKKAGGARPTP
VVVSEAGASVYSASEAAAREFPDMDVSLRGAVSIARRLQDPLAELVKIDPKAIGVGQYQHDVNQTALAKTLDAVVEDAVN
AVGVDLNTASVPLLARVAGVSPTIAENIVHYRDEHGAFVNRTALKKVPRLGPKAFEQCAGFLRISGGKDPLDASAVHPEA
YPVVRKMSEATGLSVEKLIGNSHVLSSLRPSDFADERFGIPTITDIVAELDKPGRDPRPEFKTATFKEGIENISDLKPGM
VLEGTVTNVAAFGAFVDVGVHQDGLVHVSALSDSFVSDPHQFVHSGQVVRVKVVDVDTQRKRIGLTMRLNDDPAKPRQRS
ETRERSGAKQKRSGSKTKNSPAANGSLADALKRAGFGH

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=771, Percent_Identity=34.2412451361868, Blast_Score=386, Evalue=1e-107,
Organism=Homo sapiens, GI27597090, Length=721, Percent_Identity=23.7170596393897, Blast_Score=115, Evalue=2e-25,
Organism=Escherichia coli, GI87082262, Length=751, Percent_Identity=57.7896138482024, Blast_Score=835, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17511129, Length=724, Percent_Identity=27.3480662983425, Blast_Score=209, Evalue=5e-54,
Organism=Caenorhabditis elegans, GI17552892, Length=359, Percent_Identity=29.2479108635098, Blast_Score=99, Evalue=1e-20,
Organism=Drosophila melanogaster, GI62484314, Length=754, Percent_Identity=32.2281167108753, Blast_Score=358, Evalue=1e-98,
Organism=Drosophila melanogaster, GI24640080, Length=504, Percent_Identity=21.8253968253968, Blast_Score=89, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003583
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 82367; Mature: 82367

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAATIAKELGVKQSQIETALTLLAEGNTVPFIARYRKEATGGLDDSQLRIIEERASYLR
CCHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
ELEERKHSIAEAIEEQGKLTDELRRKIFECDTKARLEDLYLPYKKRRKTKADNAREAGLE
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHCCCCCCHHHHHHH
ALVDELIAHPSADSEQRAQPYITAGFEDSKKVLEGARAILVDRFATDADLVGDVRERMYS
HHHHHHHCCCCCCCHHCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
TGTMRAGVVAGKETEGAKFKDYFEFSEAFDSLPSHRILALLRGENEGVLQLDLDAGDDEI
CCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEECCCCHHHH
YQGMIADRFKLDTNSAWLAQAIRWGWRTKLQVSAALDVRMRLKEKAEAGALEVFARNLRD
HHHHHHHHEECCCCHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHH
VLLAAPAGQRATLGLDPGYRNGVKCAVVDATGKVLDTVIVYPHQPQNQWTQAVQTLASAC
HHHCCCCCCCEEECCCCCCCCCCEEEEEECCCCEEHEEEECCCCCHHHHHHHHHHHHHHH
ATHHVDLMAIGNGTASRETEKLAHEVADLLKKAGGARPTPVVVSEAGASVYSASEAAARE
HHHCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHH
FPDMDVSLRGAVSIARRLQDPLAELVKIDPKAIGVGQYQHDVNQTALAKTLDAVVEDAVN
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AVGVDLNTASVPLLARVAGVSPTIAENIVHYRDEHGAFVNRTALKKVPRLGPKAFEQCAG
HHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHCC
FLRISGGKDPLDASAVHPEAYPVVRKMSEATGLSVEKLIGNSHVLSSLRPSDFADERFGI
EEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHCCCCCCCCCCCCC
PTITDIVAELDKPGRDPRPEFKTATFKEGIENISDLKPGMVLEGTVTNVAAFGAFVDVGV
CHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHCCCC
HQDGLVHVSALSDSFVSDPHQFVHSGQVVRVKVVDVDTQRKRIGLTMRLNDDPAKPRQRS
CCCCCEEEEECCHHHHCCHHHHHHCCCEEEEEEEECCCCHHHEEEEEEECCCCCCCHHHH
ETRERSGAKQKRSGSKTKNSPAANGSLADALKRAGFGH
HHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHCCCCC
>Mature Secondary Structure
MIAATIAKELGVKQSQIETALTLLAEGNTVPFIARYRKEATGGLDDSQLRIIEERASYLR
CCHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
ELEERKHSIAEAIEEQGKLTDELRRKIFECDTKARLEDLYLPYKKRRKTKADNAREAGLE
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHCCCCCCHHHHHHH
ALVDELIAHPSADSEQRAQPYITAGFEDSKKVLEGARAILVDRFATDADLVGDVRERMYS
HHHHHHHCCCCCCCHHCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
TGTMRAGVVAGKETEGAKFKDYFEFSEAFDSLPSHRILALLRGENEGVLQLDLDAGDDEI
CCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEECCCCHHHH
YQGMIADRFKLDTNSAWLAQAIRWGWRTKLQVSAALDVRMRLKEKAEAGALEVFARNLRD
HHHHHHHHEECCCCHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHH
VLLAAPAGQRATLGLDPGYRNGVKCAVVDATGKVLDTVIVYPHQPQNQWTQAVQTLASAC
HHHCCCCCCCEEECCCCCCCCCCEEEEEECCCCEEHEEEECCCCCHHHHHHHHHHHHHHH
ATHHVDLMAIGNGTASRETEKLAHEVADLLKKAGGARPTPVVVSEAGASVYSASEAAARE
HHHCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHH
FPDMDVSLRGAVSIARRLQDPLAELVKIDPKAIGVGQYQHDVNQTALAKTLDAVVEDAVN
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AVGVDLNTASVPLLARVAGVSPTIAENIVHYRDEHGAFVNRTALKKVPRLGPKAFEQCAG
HHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHCC
FLRISGGKDPLDASAVHPEAYPVVRKMSEATGLSVEKLIGNSHVLSSLRPSDFADERFGI
EEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHCCCCCCCCCCCCC
PTITDIVAELDKPGRDPRPEFKTATFKEGIENISDLKPGMVLEGTVTNVAAFGAFVDVGV
CHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHCCCC
HQDGLVHVSALSDSFVSDPHQFVHSGQVVRVKVVDVDTQRKRIGLTMRLNDDPAKPRQRS
CCCCCEEEEECCHHHHCCHHHHHHCCCEEEEEEEECCCCHHHEEEEEEECCCCCCCHHHH
ETRERSGAKQKRSGSKTKNSPAANGSLADALKRAGFGH
HHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10761919 [H]