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The map label for this gene is secD [H]

Identifier: 38233957

GI number: 38233957

Start: 1390632

End: 1392410

Strand: Reverse

Name: secD [H]

Synonym: DIP1372

Alternate gene names: 38233957

Gene position: 1392410-1390632 (Counterclockwise)

Preceding gene: 38233958

Following gene: 38233956

Centisome position: 55.95

GC content: 49.07

Gene sequence:

>1779_bases
TTGCCTTCGCAAACGAAGAAGGTAGCCAGTAATTCTAGGAGTTGGCCGTTCAAGTCACTCTTCGGTTTTACTGTGCTCAT
CGCAATTATCTATGCGCTTGTTTTCGCTACAGCTGATCATTCGGCGCGACCGAAACTCGGTATCGATCTTCAAGGTGGTA
CCCGTGTGACACTTGTTCCTCAGGGCCAAAATCCAACTGAGGACCAACTTGCGCAGGCAAAATCCATTTTGGAAAATCGT
GTCAATGGAATGGGTGTCTCCGGTGCAAGCGTTGTTAGCGACGGCAATACATTAGTCATCACCGTTCCAGGTGAAGACAC
GACACAAGCTCGTGCACTAGGACAAACATCGCAGCTGCTTTTCCGCCCTGTGGCAAAGCCAGATGCGCCAGATACAACGA
AATTGCTTGATGCAATGAAAGAAATGGCGAATCGATGGGTTGAAGTTGGAGTGCTCACTCCGCAAGAGGCCAATGATGCG
CTCTCAAATACCGCCAAAGCGTTAGCACAATCTGAAGGCAAAAAACCGGAGGATGCCAAAGCCCCTACAGTCACAGCTAA
GGAACCTAAAGAACCTGCTAACTCCATTGAGTCGGAACAGCTGCGCAATAAAGTCCTTGAGGTTATGAAGAAAGACCGTC
AGTCTACTGATGCGACTACACAGCTTTCTGCCAGCTCCCTGCTCAAATGTGACGACACACCTGATCCGCTACAAGGTACT
GATGATCCAACAAAACCATTGGTAGCCTGTGATCCATCAAGCGGACAAGTGTATGTTCTCAGCCCTGCACCATTGCTCCA
AGGCGAAACTGATCAAGCTAACGGTAAACGACTCACCGGCAACGAGATTGACACCAACCGTCCGATCACGGGTGGGCTGA
ACCCCCAAACAGGCCAAATGGAGATCGGCTTCTCCTTTAAATCGGACAATGGGGATCAAGGCAGCGCAACTTGGGCGAAA
TTGACTCAAGAATACCTGCAAAAACAGGTAGCTATTACTCTCGATTCGAAGATTATCTCTGCTCCAGTTATCCAATCTGC
AACCCCAGTAGGCTCGGCAACTGCAATTACCGGAAGCTTTAGCCAAAAAGAAGCACAAGATCTGGCTAACAACCTGAAAT
ACGGAGCTCTGCCTTTGAGCTTTGCTGGAGAAAACGGGGAAACCGGTGGCACGACCACTACAGTTCCCGCTTCACTAGGC
GTGGCGTCTTTGAAGGCAGGTTTGATCGCTGGACTCGTGGGATTGATTTTGGTGGCATTGTATTCGCTTATCAATTACCG
ATTCTTCGGCCTTATTTCGATGTTCTCGCTGGTTGCATCCTTCGCTTTGGTATTCGGTGCACTAGTCTTGTTGGGGCGTT
GGATCGGCTATTCCTTGGACCTTGCTGGAATTGCAGGTTTGATTATCGGTATTGGTACTACTGCCGACTCCTTTGTCGTT
TTGTATGAACGCATCAAGGATGAAGTTCGCGATGGGCGTTCGTTCCGTTCCTCGGTACCAAGGGGTTGGGAACGTGCCCG
CCAAACAATTATTACTGGTAATGCCGTTACCCTGATTGGTGCAGTGATTATCTACATCTTGGCCGTTGGAGAAGTGAAAG
GCTTCGCTTTTACGCTTGGGCTCACAACCATCTTCGATATCGTTGTTACCTTCCTTGTTACAGCTCCACTAGTTGTCCTC
GCATCTCGAAAGCCGTGGACATCTTCAGGTGCAGCAAATGGCATGGGAAAAATTATTTCTATGCATCACGGTGCCAACGC
AGCCAAAGGAGAAGAATAA

Upstream 100 bases:

>100_bases
AAATTGCTGTTCGATCGTGTTCATTTTCGCATTGATGGAAAGCAAAGAGAAGCTGACGGCGGCGTGCTGTTAGACCATCA
TTTACATAGGAGTTAGTTCA

Downstream 100 bases:

>100_bases
ATGAGTGGCAATAGCGTTTTGTCAAAGCTCTACACCGGTGATGGTGGACTAGACTTCGTTGGACGCCGTCGAACGTGGTA
CCGAACCACACTTATCATTG

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 592; Mature: 591

Protein sequence:

>592_residues
MPSQTKKVASNSRSWPFKSLFGFTVLIAIIYALVFATADHSARPKLGIDLQGGTRVTLVPQGQNPTEDQLAQAKSILENR
VNGMGVSGASVVSDGNTLVITVPGEDTTQARALGQTSQLLFRPVAKPDAPDTTKLLDAMKEMANRWVEVGVLTPQEANDA
LSNTAKALAQSEGKKPEDAKAPTVTAKEPKEPANSIESEQLRNKVLEVMKKDRQSTDATTQLSASSLLKCDDTPDPLQGT
DDPTKPLVACDPSSGQVYVLSPAPLLQGETDQANGKRLTGNEIDTNRPITGGLNPQTGQMEIGFSFKSDNGDQGSATWAK
LTQEYLQKQVAITLDSKIISAPVIQSATPVGSATAITGSFSQKEAQDLANNLKYGALPLSFAGENGETGGTTTTVPASLG
VASLKAGLIAGLVGLILVALYSLINYRFFGLISMFSLVASFALVFGALVLLGRWIGYSLDLAGIAGLIIGIGTTADSFVV
LYERIKDEVRDGRSFRSSVPRGWERARQTIITGNAVTLIGAVIIYILAVGEVKGFAFTLGLTTIFDIVVTFLVTAPLVVL
ASRKPWTSSGAANGMGKIISMHHGANAAKGEE

Sequences:

>Translated_592_residues
MPSQTKKVASNSRSWPFKSLFGFTVLIAIIYALVFATADHSARPKLGIDLQGGTRVTLVPQGQNPTEDQLAQAKSILENR
VNGMGVSGASVVSDGNTLVITVPGEDTTQARALGQTSQLLFRPVAKPDAPDTTKLLDAMKEMANRWVEVGVLTPQEANDA
LSNTAKALAQSEGKKPEDAKAPTVTAKEPKEPANSIESEQLRNKVLEVMKKDRQSTDATTQLSASSLLKCDDTPDPLQGT
DDPTKPLVACDPSSGQVYVLSPAPLLQGETDQANGKRLTGNEIDTNRPITGGLNPQTGQMEIGFSFKSDNGDQGSATWAK
LTQEYLQKQVAITLDSKIISAPVIQSATPVGSATAITGSFSQKEAQDLANNLKYGALPLSFAGENGETGGTTTTVPASLG
VASLKAGLIAGLVGLILVALYSLINYRFFGLISMFSLVASFALVFGALVLLGRWIGYSLDLAGIAGLIIGIGTTADSFVV
LYERIKDEVRDGRSFRSSVPRGWERARQTIITGNAVTLIGAVIIYILAVGEVKGFAFTLGLTTIFDIVVTFLVTAPLVVL
ASRKPWTSSGAANGMGKIISMHHGANAAKGEE
>Mature_591_residues
PSQTKKVASNSRSWPFKSLFGFTVLIAIIYALVFATADHSARPKLGIDLQGGTRVTLVPQGQNPTEDQLAQAKSILENRV
NGMGVSGASVVSDGNTLVITVPGEDTTQARALGQTSQLLFRPVAKPDAPDTTKLLDAMKEMANRWVEVGVLTPQEANDAL
SNTAKALAQSEGKKPEDAKAPTVTAKEPKEPANSIESEQLRNKVLEVMKKDRQSTDATTQLSASSLLKCDDTPDPLQGTD
DPTKPLVACDPSSGQVYVLSPAPLLQGETDQANGKRLTGNEIDTNRPITGGLNPQTGQMEIGFSFKSDNGDQGSATWAKL
TQEYLQKQVAITLDSKIISAPVIQSATPVGSATAITGSFSQKEAQDLANNLKYGALPLSFAGENGETGGTTTTVPASLGV
ASLKAGLIAGLVGLILVALYSLINYRFFGLISMFSLVASFALVFGALVLLGRWIGYSLDLAGIAGLIIGIGTTADSFVVL
YERIKDEVRDGRSFRSSVPRGWERARQTIITGNAVTLIGAVIIYILAVGEVKGFAFTLGLTTIFDIVVTFLVTAPLVVLA
SRKPWTSSGAANGMGKIISMHHGANAAKGEE

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=218, Percent_Identity=33.4862385321101, Blast_Score=110, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 62423; Mature: 62292

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSQTKKVASNSRSWPFKSLFGFTVLIAIIYALVFATADHSARPKLGIDLQGGTRVTLVP
CCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEE
QGQNPTEDQLAQAKSILENRVNGMGVSGASVVSDGNTLVITVPGEDTTQARALGQTSQLL
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEECCCCEEEEEECCCCCHHHHHHCHHHHHH
FRPVAKPDAPDTTKLLDAMKEMANRWVEVGVLTPQEANDALSNTAKALAQSEGKKPEDAK
HHHCCCCCCCCHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCC
APTVTAKEPKEPANSIESEQLRNKVLEVMKKDRQSTDATTQLSASSLLKCDDTPDPLQGT
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEECCCCCCCCCCC
DDPTKPLVACDPSSGQVYVLSPAPLLQGETDQANGKRLTGNEIDTNRPITGGLNPQTGQM
CCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCE
EIGFSFKSDNGDQGSATWAKLTQEYLQKQVAITLDSKIISAPVIQSATPVGSATAITGSF
EEEEEECCCCCCCCCHHHHHHHHHHHHHHHHEEECCHHHHCCHHHCCCCCCCCEEEECCC
SQKEAQDLANNLKYGALPLSFAGENGETGGTTTTVPASLGVASLKAGLIAGLVGLILVAL
HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHH
YSLINYRFFGLISMFSLVASFALVFGALVLLGRWIGYSLDLAGIAGLIIGIGTTADSFVV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHH
LYERIKDEVRDGRSFRSSVPRGWERARQTIITGNAVTLIGAVIIYILAVGEVKGFAFTLG
HHHHHHHHHHCCHHHHHHCCHHHHHHHHHEECCCHHHHHHHHHHHHHHHHCCCCHHHHHH
LTTIFDIVVTFLVTAPLVVLASRKPWTSSGAANGMGKIISMHHGANAAKGEE
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHEEECCCCCCCCCC
>Mature Secondary Structure 
PSQTKKVASNSRSWPFKSLFGFTVLIAIIYALVFATADHSARPKLGIDLQGGTRVTLVP
CCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEE
QGQNPTEDQLAQAKSILENRVNGMGVSGASVVSDGNTLVITVPGEDTTQARALGQTSQLL
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEECCCCEEEEEECCCCCHHHHHHCHHHHHH
FRPVAKPDAPDTTKLLDAMKEMANRWVEVGVLTPQEANDALSNTAKALAQSEGKKPEDAK
HHHCCCCCCCCHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCC
APTVTAKEPKEPANSIESEQLRNKVLEVMKKDRQSTDATTQLSASSLLKCDDTPDPLQGT
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEECCCCCCCCCCC
DDPTKPLVACDPSSGQVYVLSPAPLLQGETDQANGKRLTGNEIDTNRPITGGLNPQTGQM
CCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCE
EIGFSFKSDNGDQGSATWAKLTQEYLQKQVAITLDSKIISAPVIQSATPVGSATAITGSF
EEEEEECCCCCCCCCHHHHHHHHHHHHHHHHEEECCHHHHCCHHHCCCCCCCCEEEECCC
SQKEAQDLANNLKYGALPLSFAGENGETGGTTTTVPASLGVASLKAGLIAGLVGLILVAL
HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHH
YSLINYRFFGLISMFSLVASFALVFGALVLLGRWIGYSLDLAGIAGLIIGIGTTADSFVV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHH
LYERIKDEVRDGRSFRSSVPRGWERARQTIITGNAVTLIGAVIIYILAVGEVKGFAFTLG
HHHHHHHHHHCCHHHHHHCCHHHHHHHHHEECCCHHHHHHHHHHHHHHHHCCCCHHHHHH
LTTIFDIVVTFLVTAPLVVLASRKPWTSSGAANGMGKIISMHHGANAAKGEE
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]