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The map label for this gene is pafB [H]

Identifier: 38233832

GI number: 38233832

Start: 1246792

End: 1247769

Strand: Reverse

Name: pafB [H]

Synonym: DIP1244

Alternate gene names: 38233832

Gene position: 1247769-1246792 (Counterclockwise)

Preceding gene: 38233833

Following gene: 38233831

Centisome position: 50.14

GC content: 49.08

Gene sequence:

>978_bases
ATGGGCAAAGATGTAGCGCTGGAAAGAATCGTGAACTTGACCTTTGCGTTTTTGCGAGCCGAAACCCAAGGCAGACACTA
TATTTCAGCTGACTGGGTGATCAAACACGTCGATGGCTATGCAAAAAATTCTGCAGGCCAGATCCGTAGCGATGCTGCTG
CGCATCAATTGTTCAAACGCGATCGCGCAGCCCTTGACCGCGCCGGTGTTCCCATCGAAACAATCGCTACTGGTGCGCAA
ACTCTTTATCGTTTGCGCACCGAAGATTATTCGCTTCCTGAAGTGACTTTCACTCCTGAAGAAGCCACCGTTTTGGCACT
GGCTGGACAAATGGGACTAGGAGACGAATTAGCAACTTTTTCTCGATCTGGGTGGACTAAAATTGCAGCTAGCGGAGTAC
AACGCGAGCTCACGAGTACCCCTCGGTACACGCCAGTAAACGACGTTAATTCTATTGCCGCCCGTGATTTTGATGCAATT
TTGGCTGCCCGTGCACACCGCAGTGCAGTAACTTTTGATTATTATGAAACGTCTACTTCATCGCCTCAACAACGCATCAT
GGATCCATGGTCGATTGTGAGCGAACGAGACCGTGTTTATCTAGTTGGCTACGATCATGATAGACAAGCTCCTCGTTGTT
TTCGTATCACGAAACTTTCTGGCATCCGACGTGTTGCTTTAGAAGCTGATTTTGTCGAACCAGATGCCAACATTGACCTT
CAACAATTAGTAAAAGAACAACTTCGTCGTGGGAAGCTGCTCGTCAACGCAATCATCAAGGTACAACCAGACAAGGCACA
GGAGTTGACAAGCAGGGGAGAACGTCAACCAGACGGCACGCTGTTACTACGCGATGTCGACCGTGATTGGTTGGTGCGAA
CGCTTGCACGATATGCGCCGCATGCACGAGTGCTTAGCCCTGATGATCTCATTACAGATGTCGTGTCACTGCTCAAACAA
GCTGCAGGGGTTGATTAA

Upstream 100 bases:

>100_bases
CGATCGCGTGGACCAGCTCATTAGCTACATGCGAAATCATGCGGCTTCTTACAGCACAGATACTGCAATTTCATAAGTTT
GGATAACGTGGAGATTTGTC

Downstream 100 bases:

>100_bases
AATAGAGTCTGCTTATCGTAATAACGCCAATCACCGACTTGCCGATCTGGTCCGTCTACTTAATTTGTTGCCCTACTTTC
AAGCGCACCCAGGCCGTTCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 324

Protein sequence:

>325_residues
MGKDVALERIVNLTFAFLRAETQGRHYISADWVIKHVDGYAKNSAGQIRSDAAAHQLFKRDRAALDRAGVPIETIATGAQ
TLYRLRTEDYSLPEVTFTPEEATVLALAGQMGLGDELATFSRSGWTKIAASGVQRELTSTPRYTPVNDVNSIAARDFDAI
LAARAHRSAVTFDYYETSTSSPQQRIMDPWSIVSERDRVYLVGYDHDRQAPRCFRITKLSGIRRVALEADFVEPDANIDL
QQLVKEQLRRGKLLVNAIIKVQPDKAQELTSRGERQPDGTLLLRDVDRDWLVRTLARYAPHARVLSPDDLITDVVSLLKQ
AAGVD

Sequences:

>Translated_325_residues
MGKDVALERIVNLTFAFLRAETQGRHYISADWVIKHVDGYAKNSAGQIRSDAAAHQLFKRDRAALDRAGVPIETIATGAQ
TLYRLRTEDYSLPEVTFTPEEATVLALAGQMGLGDELATFSRSGWTKIAASGVQRELTSTPRYTPVNDVNSIAARDFDAI
LAARAHRSAVTFDYYETSTSSPQQRIMDPWSIVSERDRVYLVGYDHDRQAPRCFRITKLSGIRRVALEADFVEPDANIDL
QQLVKEQLRRGKLLVNAIIKVQPDKAQELTSRGERQPDGTLLLRDVDRDWLVRTLARYAPHARVLSPDDLITDVVSLLKQ
AAGVD
>Mature_324_residues
GKDVALERIVNLTFAFLRAETQGRHYISADWVIKHVDGYAKNSAGQIRSDAAAHQLFKRDRAALDRAGVPIETIATGAQT
LYRLRTEDYSLPEVTFTPEEATVLALAGQMGLGDELATFSRSGWTKIAASGVQRELTSTPRYTPVNDVNSIAARDFDAIL
AARAHRSAVTFDYYETSTSSPQQRIMDPWSIVSERDRVYLVGYDHDRQAPRCFRITKLSGIRRVALEADFVEPDANIDLQ
QLVKEQLRRGKLLVNAIIKVQPDKAQELTSRGERQPDGTLLLRDVDRDWLVRTLARYAPHARVLSPDDLITDVVSLLKQA
AGVD

Specific function: Does not seem to be involved in pupylation or substrate degradation [H]

COG id: COG2378

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pafB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36305; Mature: 36174

Theoretical pI: Translated: 7.17; Mature: 7.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKDVALERIVNLTFAFLRAETQGRHYISADWVIKHVDGYAKNSAGQIRSDAAAHQLFKR
CCCHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
DRAALDRAGVPIETIATGAQTLYRLRTEDYSLPEVTFTPEEATVLALAGQMGLGDELATF
HHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCEEEEEECCCCCCHHHHHH
SRSGWTKIAASGVQRELTSTPRYTPVNDVNSIAARDFDAILAARAHRSAVTFDYYETSTS
HCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCC
SPQQRIMDPWSIVSERDRVYLVGYDHDRQAPRCFRITKLSGIRRVALEADFVEPDANIDL
CHHHHHCCHHHHHCCCCCEEEEEECCCCCCCCEEEEHHHCCHHEEEEECCCCCCCCCCCH
QQLVKEQLRRGKLLVNAIIKVQPDKAQELTSRGERQPDGTLLLRDVDRDWLVRTLARYAP
HHHHHHHHHHCCEEEHHHHEECCCHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHCC
HARVLSPDDLITDVVSLLKQAAGVD
CCCCCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
GKDVALERIVNLTFAFLRAETQGRHYISADWVIKHVDGYAKNSAGQIRSDAAAHQLFKR
CCHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
DRAALDRAGVPIETIATGAQTLYRLRTEDYSLPEVTFTPEEATVLALAGQMGLGDELATF
HHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCEEEEEECCCCCCHHHHHH
SRSGWTKIAASGVQRELTSTPRYTPVNDVNSIAARDFDAILAARAHRSAVTFDYYETSTS
HCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCC
SPQQRIMDPWSIVSERDRVYLVGYDHDRQAPRCFRITKLSGIRRVALEADFVEPDANIDL
CHHHHHCCHHHHHCCCCCEEEEEECCCCCCCCEEEEHHHCCHHEEEEECCCCCCCCCCCH
QQLVKEQLRRGKLLVNAIIKVQPDKAQELTSRGERQPDGTLLLRDVDRDWLVRTLARYAP
HHHHHHHHHHCCEEEHHHHEECCCHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHCC
HARVLSPDDLITDVVSLLKQAAGVD
CCCCCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11234002 [H]