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The map label for this gene is pafC [H]

Identifier: 38233831

GI number: 38233831

Start: 1245768

End: 1246727

Strand: Reverse

Name: pafC [H]

Synonym: DIP1243

Alternate gene names: 38233831

Gene position: 1246727-1245768 (Counterclockwise)

Preceding gene: 38233832

Following gene: 38233830

Centisome position: 50.1

GC content: 47.29

Gene sequence:

>960_bases
TTGTTGCCCTACTTTCAAGCGCACCCAGGCCGTTCCATGATGGAAGCGGCGGTGGATTTAGGTTCCACACCAAGCCAAAT
TAAAGAAGACCTCAACCGGCTGTTTTGTTGTGGTCCAGGCACTTTTCCCGATGAACTAGTTGATCTTGATGCACAACTAC
AATCCGTAACTATCTTTGATAGTCAAGGTATGGACGCTCCGCTTCGACTTACACGAACTGAAGCTGGTGCATTGCTATTA
TCTTTGGAATATCTCGAACAATTTCCTGAATTAGTTCATATGGAAACGGTAAAAAGCGCAGCTAAAAAACTTCGAGAAAT
TATGGGCCCCGAATCTTCCGCTGTATTCGATTCGCAGCGTTTCGAAGATACTCCTGCCTCAGAACCAGTTATTGATGTCA
TTCGCGACTCCATGGCTCAACGAGTGCAACTGCAATTTGATTACTATTCCCGCGCAAAAGACACCACAACCAAACGAATA
GTAAGCGCGACTCGACTTTTTAGCGCTGATGGTTCTACCTACTTAGTTGGATGGGACCACGAAGCTCAATCACACCGTAC
GTTTTTGACTACTCAAATCCGCAATGTGTGGTTGAGCACACAACCTGCCCAGCCACACGTATCTTCTTTGCGCTTCGATG
ATTCCGATCCGTTTGGGCTCCAGACTGCTGAGCAGCATGTTGAAATTGAAATAAACGAATCCGCCCAATGGCTCACCACG
GTATTTCCACTTGAAGACGTTCAGCCCGCACACAACGGCTGGATTCAAGCGATCATGCCAGTAGTCTCCTATTCGTGGCT
CATTGATACTTTAACGCGCAACGCAGACCGCATGCGATTAAGAGACGTCAGATCTCCTTTAGCTATTAGCATGCGTGAGT
CAGCCAAATTGGGCTTGACCGCGTATGCTAGTGAACATGCCGAGGGCAATCAGTTTGAGGGGAAAGAGTCCTTAGAATGA

Upstream 100 bases:

>100_bases
GTGTCACTGCTCAAACAAGCTGCAGGGGTTGATTAAAATAGAGTCTGCTTATCGTAATAACGCCAATCACCGACTTGCCG
ATCTGGTCCGTCTACTTAAT

Downstream 100 bases:

>100_bases
TTGCTTACTATCGACCTTGAAAGAAAGGCTCATCATGAACCTAGGACCTACCGAAATCCTGTTAATCCTCGTCATCGTTG
TACTGCTTTTTGGCGCCAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MLPYFQAHPGRSMMEAAVDLGSTPSQIKEDLNRLFCCGPGTFPDELVDLDAQLQSVTIFDSQGMDAPLRLTRTEAGALLL
SLEYLEQFPELVHMETVKSAAKKLREIMGPESSAVFDSQRFEDTPASEPVIDVIRDSMAQRVQLQFDYYSRAKDTTTKRI
VSATRLFSADGSTYLVGWDHEAQSHRTFLTTQIRNVWLSTQPAQPHVSSLRFDDSDPFGLQTAEQHVEIEINESAQWLTT
VFPLEDVQPAHNGWIQAIMPVVSYSWLIDTLTRNADRMRLRDVRSPLAISMRESAKLGLTAYASEHAEGNQFEGKESLE

Sequences:

>Translated_319_residues
MLPYFQAHPGRSMMEAAVDLGSTPSQIKEDLNRLFCCGPGTFPDELVDLDAQLQSVTIFDSQGMDAPLRLTRTEAGALLL
SLEYLEQFPELVHMETVKSAAKKLREIMGPESSAVFDSQRFEDTPASEPVIDVIRDSMAQRVQLQFDYYSRAKDTTTKRI
VSATRLFSADGSTYLVGWDHEAQSHRTFLTTQIRNVWLSTQPAQPHVSSLRFDDSDPFGLQTAEQHVEIEINESAQWLTT
VFPLEDVQPAHNGWIQAIMPVVSYSWLIDTLTRNADRMRLRDVRSPLAISMRESAKLGLTAYASEHAEGNQFEGKESLE
>Mature_319_residues
MLPYFQAHPGRSMMEAAVDLGSTPSQIKEDLNRLFCCGPGTFPDELVDLDAQLQSVTIFDSQGMDAPLRLTRTEAGALLL
SLEYLEQFPELVHMETVKSAAKKLREIMGPESSAVFDSQRFEDTPASEPVIDVIRDSMAQRVQLQFDYYSRAKDTTTKRI
VSATRLFSADGSTYLVGWDHEAQSHRTFLTTQIRNVWLSTQPAQPHVSSLRFDDSDPFGLQTAEQHVEIEINESAQWLTT
VFPLEDVQPAHNGWIQAIMPVVSYSWLIDTLTRNADRMRLRDVRSPLAISMRESAKLGLTAYASEHAEGNQFEGKESLE

Specific function: Does not seem to be involved in pupylation or substrate degradation [H]

COG id: COG2378

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pafC family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35889; Mature: 35889

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPYFQAHPGRSMMEAAVDLGSTPSQIKEDLNRLFCCGPGTFPDELVDLDAQLQSVTIFD
CCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHEEEECCCCCHHHHHHHCCHHEEEEEEC
SQGMDAPLRLTRTEAGALLLSLEYLEQFPELVHMETVKSAAKKLREIMGPESSAVFDSQR
CCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCHH
FEDTPASEPVIDVIRDSMAQRVQLQFDYYSRAKDTTTKRIVSATRLFSADGSTYLVGWDH
CCCCCCCCHHHHHHHHHHHHHEEEEEHHHHHCCHHHHHHHHHHHHHEECCCCEEEEECCC
EAQSHRTFLTTQIRNVWLSTQPAQPHVSSLRFDDSDPFGLQTAEQHVEIEINESAQWLTT
CCCCCHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCHHE
VFPLEDVQPAHNGWIQAIMPVVSYSWLIDTLTRNADRMRLRDVRSPLAISMRESAKLGLT
ECCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEHHCCCCCEE
AYASEHAEGNQFEGKESLE
EEHHCCCCCCCCCCHHCCC
>Mature Secondary Structure
MLPYFQAHPGRSMMEAAVDLGSTPSQIKEDLNRLFCCGPGTFPDELVDLDAQLQSVTIFD
CCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHEEEECCCCCHHHHHHHCCHHEEEEEEC
SQGMDAPLRLTRTEAGALLLSLEYLEQFPELVHMETVKSAAKKLREIMGPESSAVFDSQR
CCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCHH
FEDTPASEPVIDVIRDSMAQRVQLQFDYYSRAKDTTTKRIVSATRLFSADGSTYLVGWDH
CCCCCCCCHHHHHHHHHHHHHEEEEEHHHHHCCHHHHHHHHHHHHHEECCCCEEEEECCC
EAQSHRTFLTTQIRNVWLSTQPAQPHVSSLRFDDSDPFGLQTAEQHVEIEINESAQWLTT
CCCCCHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCHHE
VFPLEDVQPAHNGWIQAIMPVVSYSWLIDTLTRNADRMRLRDVRSPLAISMRESAKLGLT
ECCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEHHCCCCCEE
AYASEHAEGNQFEGKESLE
EEHHCCCCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11234002 [H]