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The map label for this gene is tnpF

Identifier: 14141847

GI number: 14141847

Start: 15986

End: 16651

Strand: Direct

Name: tnpF

Synonym: SAVP024

Alternate gene names: NA

Gene position: 15986-16651 (Clockwise)

Preceding gene: 14141841

Following gene: 14141848

Centisome position: 63.67

GC content: 34.83

Gene sequence:

>666_bases
ATGAACTATTTCAGATATAAACAATTTAACAAGGACGTCATCACTGTAGCCGTTGGCTACTATCTAAGATATGCGCTTAG
TTATCGTGATATATCTGAAATACTAAGAGAACGTGGTGTCAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAAT
ATGCTCCCGTTTTGTATCAAATTTGGAAGAAAAAACATAAAAAAGCGTATTATAAGTGGCGTGTTGATGAGACATATATC
AAAATTAAAGGACAGTGGTGTTATCTGTATCGCGCGATTGATGCAGATGGACATACATTAGATATTTGGTTACGCAAAAA
ACGAGATCATCAATCAGCATATGCGTTTATTAAGCGCCTTATTAAACAATTCGGTAAACCTCAAATGATAATTACAGATC
AAGCACCTTCAACGAAGGTAGCCATGGCTAAAATAATTAAAGTGTTTAAGTTGAAACCTAACTGTCATTGCACATCTAAA
TATCTCAATAACTTCATTGAACAAGATCATCGTCACATTAAGGTGAGAAAGACAAGATATCAAAGTGTCAATACGGCAAA
AAATACACTCAAAGGCATTGAATGTATTTACGGATTATATAAAAAAACCGTAGGTCTCTTCAGATCTACGGATTTTCACC
ATGCCACGAAATTAGTTATATGTTAG

Upstream 100 bases:

>100_bases
CATCTACGAATATACGATGATAGGTAGCTTCTGATAAGTGATCTGGTTCTGTTGCAAAGTTGATTTTGTAGTATAATTTT
AACAAAAAGGAGTATGCTAT

Downstream 100 bases:

>100_bases
CTGGTTAGGCGAAGACTGACACAATAAAATGGTGATTAGCTATATTTTTCTAACTTTGCAACAGAACCCCTAAAAAAAAT
TCAAAATCTTTCAGAGAAGC

Product: transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MNYFRYKQFNKDVITVAVGYYLRYALSYRDISEILRERGVNVHHSTVYRWVQEYAPVLYQIWKKKHKKAYYKWRVDETYI
KIKGQWCYLYRAIDADGHTLDIWLRKKRDHQSAYAFIKRLIKQFGKPQMIITDQAPSTKVAMAKIIKVFKLKPNCHCTSK
YLNNFIEQDHRHIKVRKTRYQSVNTAKNTLKGIECIYGLYKKTVGLFRSTDFHHATKLVIC

Sequences:

>Translated_221_residues
MNYFRYKQFNKDVITVAVGYYLRYALSYRDISEILRERGVNVHHSTVYRWVQEYAPVLYQIWKKKHKKAYYKWRVDETYI
KIKGQWCYLYRAIDADGHTLDIWLRKKRDHQSAYAFIKRLIKQFGKPQMIITDQAPSTKVAMAKIIKVFKLKPNCHCTSK
YLNNFIEQDHRHIKVRKTRYQSVNTAKNTLKGIECIYGLYKKTVGLFRSTDFHHATKLVIC
>Mature_221_residues
MNYFRYKQFNKDVITVAVGYYLRYALSYRDISEILRERGVNVHHSTVYRWVQEYAPVLYQIWKKKHKKAYYKWRVDETYI
KIKGQWCYLYRAIDADGHTLDIWLRKKRDHQSAYAFIKRLIKQFGKPQMIITDQAPSTKVAMAKIIKVFKLKPNCHCTSK
YLNNFIEQDHRHIKVRKTRYQSVNTAKNTLKGIECIYGLYKKTVGLFRSTDFHHATKLVIC

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: COG3316

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 26560; Mature: 26560

Theoretical pI: Translated: 10.41; Mature: 10.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYFRYKQFNKDVITVAVGYYLRYALSYRDISEILRERGVNVHHSTVYRWVQEYAPVLYQ
CCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
IWKKKHKKAYYKWRVDETYIKIKGQWCYLYRAIDADGHTLDIWLRKKRDHQSAYAFIKRL
HHHHHHHHHHEEEEECCEEEEEECCEEEEEEEECCCCCEEEEEEECCCCHHHHHHHHHHH
IKQFGKPQMIITDQAPSTKVAMAKIIKVFKLKPNCHCTSKYLNNFIEQDHRHIKVRKTRY
HHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEEEHHHHHH
QSVNTAKNTLKGIECIYGLYKKTVGLFRSTDFHHATKLVIC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEC
>Mature Secondary Structure
MNYFRYKQFNKDVITVAVGYYLRYALSYRDISEILRERGVNVHHSTVYRWVQEYAPVLYQ
CCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
IWKKKHKKAYYKWRVDETYIKIKGQWCYLYRAIDADGHTLDIWLRKKRDHQSAYAFIKRL
HHHHHHHHHHEEEEECCEEEEEECCEEEEEEEECCCCCEEEEEEECCCCHHHHHHHHHHH
IKQFGKPQMIITDQAPSTKVAMAKIIKVFKLKPNCHCTSKYLNNFIEQDHRHIKVRKTRY
HHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEEEHHHHHH
QSVNTAKNTLKGIECIYGLYKKTVGLFRSTDFHHATKLVIC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2548057; 2365064 [H]