| Definition | Staphylococcus aureus subsp. aureus Mu50, complete genome. |
|---|---|
| Accession | NC_002758 |
| Length | 2,878,529 |
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The map label for this gene is oppD [H]
Identifier: 15925454
GI number: 15925454
Start: 2600023
End: 2600838
Strand: Reverse
Name: oppD [H]
Synonym: SAV2464
Alternate gene names: 15925454
Gene position: 2600838-2600023 (Counterclockwise)
Preceding gene: 15925455
Following gene: 15925453
Centisome position: 90.35
GC content: 35.42
Gene sequence:
>816_bases ATGACATTGTTAACAGTTAAGCATTTGACGATTACAGATACCTGGACAGATCAACCACTCGTGAGTGATGTGAATTTTAC ATTAACTAAGGGTGAAACTTTAGGCGTTATTGGAGAAAGTGGTAGCGGTAAATCAATTACATGCAAATCGATTATTGGTT TGAATCCCGAACGACTCGGGGTGACAGGTGAAATTATCTTTGATGGTACATCAATGTTGTCATTATCTGAATCGCAACGG AAAAAGTACCGTGGTAAAGATATTGCGATGGTCATGCAACAAGGTAGTCGTGCCTTTGACCCATCAACTACTGTCGGTAA ACAAATGTTTGAGACTATGAAAGTACATACGTCAATGTCTACACAAGAAATTGAAAAGACATTGATTGAATATATGGATT ATTTAAGTTTGAAAGATCCTAAACGTATATTAAAATCATACCCTTACATGTTATCAGGAGGAATGTTACAGCGATTGATG ATTGCTTTAGCGTTAGCTTTGAAACCAAAGTTAATCATTGCTGATGAGCCGACAACGGCTTTAGATACAATTACACAATA TGATGTACTGGAAGCATTTATAGATATTAAAAAACACTTTGACTGTGCGATGATTTTCATTTCACATGATTTAACGGTTA TTAATAAGATTGCAGACCGTGTTGTTGTGATGAAAAATGGTCAACTGATAGAGCATGGTACACGTGAATCAGTCTTGCAT CATCCAGAACATGTTTATACGAAGTATTTATTATCAACGAAGAAGAAGATTAATGATCATTTTAAACATGTGATGAGGGG TGATGTACATGATTAA
Upstream 100 bases:
>100_bases TGGCATTTAACTTCTTATCCGATGCTTTACAAATTGCTATTGATCCCCGCATCTCTTCTAAAGATAAACTTCGTTCTGTG AAAAAAGGAGTGGTGCAATC
Downstream 100 bases:
>100_bases AGTTACAGATGTTGAAAAATCATATCAAAGCGCACATGTTTTTAAGCGTCGTCGAACACCTATCGTGAAAGGTGTGTCAT TTGAGTGTCCAATCGGTGCG
Product: oligopeptide transporter ATPase subunit
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: Stage 0 sporulation protein KD [H]
Number of amino acids: Translated: 271; Mature: 270
Protein sequence:
>271_residues MTLLTVKHLTITDTWTDQPLVSDVNFTLTKGETLGVIGESGSGKSITCKSIIGLNPERLGVTGEIIFDGTSMLSLSESQR KKYRGKDIAMVMQQGSRAFDPSTTVGKQMFETMKVHTSMSTQEIEKTLIEYMDYLSLKDPKRILKSYPYMLSGGMLQRLM IALALALKPKLIIADEPTTALDTITQYDVLEAFIDIKKHFDCAMIFISHDLTVINKIADRVVVMKNGQLIEHGTRESVLH HPEHVYTKYLLSTKKKINDHFKHVMRGDVHD
Sequences:
>Translated_271_residues MTLLTVKHLTITDTWTDQPLVSDVNFTLTKGETLGVIGESGSGKSITCKSIIGLNPERLGVTGEIIFDGTSMLSLSESQR KKYRGKDIAMVMQQGSRAFDPSTTVGKQMFETMKVHTSMSTQEIEKTLIEYMDYLSLKDPKRILKSYPYMLSGGMLQRLM IALALALKPKLIIADEPTTALDTITQYDVLEAFIDIKKHFDCAMIFISHDLTVINKIADRVVVMKNGQLIEHGTRESVLH HPEHVYTKYLLSTKKKINDHFKHVMRGDVHD >Mature_270_residues TLLTVKHLTITDTWTDQPLVSDVNFTLTKGETLGVIGESGSGKSITCKSIIGLNPERLGVTGEIIFDGTSMLSLSESQRK KYRGKDIAMVMQQGSRAFDPSTTVGKQMFETMKVHTSMSTQEIEKTLIEYMDYLSLKDPKRILKSYPYMLSGGMLQRLMI ALALALKPKLIIADEPTTALDTITQYDVLEAFIDIKKHFDCAMIFISHDLTVINKIADRVVVMKNGQLIEHGTRESVLHH PEHVYTKYLLSTKKKINDHFKHVMRGDVHD
Specific function: Part of the binding protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system. Required for sporulation and competence [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI42741659, Length=235, Percent_Identity=29.3617021276596, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI42490749, Length=255, Percent_Identity=27.843137254902, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI4505771, Length=233, Percent_Identity=29.1845493562232, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI9961252, Length=233, Percent_Identity=29.1845493562232, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI9961250, Length=235, Percent_Identity=28.936170212766, Blast_Score=75, Evalue=9e-14, Organism=Homo sapiens, GI9955963, Length=227, Percent_Identity=26.8722466960352, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI116734710, Length=216, Percent_Identity=25.9259259259259, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI6005701, Length=236, Percent_Identity=25.8474576271186, Blast_Score=69, Evalue=6e-12, Organism=Escherichia coli, GI48994883, Length=259, Percent_Identity=38.6100386100386, Blast_Score=199, Evalue=2e-52, Organism=Escherichia coli, GI1789963, Length=255, Percent_Identity=36.4705882352941, Blast_Score=189, Evalue=2e-49, Organism=Escherichia coli, GI145693107, Length=266, Percent_Identity=37.218045112782, Blast_Score=187, Evalue=6e-49, Organism=Escherichia coli, GI1788506, Length=257, Percent_Identity=36.5758754863813, Blast_Score=187, Evalue=7e-49, Organism=Escherichia coli, GI1787759, Length=251, Percent_Identity=37.4501992031873, Blast_Score=183, Evalue=1e-47, Organism=Escherichia coli, GI1787548, Length=276, Percent_Identity=33.695652173913, Blast_Score=169, Evalue=2e-43, Organism=Escherichia coli, GI1789890, Length=237, Percent_Identity=37.1308016877637, Blast_Score=162, Evalue=2e-41, Organism=Escherichia coli, GI1787500, Length=254, Percent_Identity=37.4015748031496, Blast_Score=159, Evalue=1e-40, Organism=Escherichia coli, GI1789962, Length=235, Percent_Identity=35.3191489361702, Blast_Score=155, Evalue=4e-39, Organism=Escherichia coli, GI1789891, Length=238, Percent_Identity=34.453781512605, Blast_Score=139, Evalue=2e-34, Organism=Escherichia coli, GI48994997, Length=233, Percent_Identity=34.3347639484979, Blast_Score=138, Evalue=3e-34, Organism=Escherichia coli, GI1787547, Length=276, Percent_Identity=30.4347826086957, Blast_Score=121, Evalue=5e-29, Organism=Escherichia coli, GI1787758, Length=239, Percent_Identity=30.9623430962343, Blast_Score=120, Evalue=1e-28, Organism=Escherichia coli, GI1786398, Length=240, Percent_Identity=33.3333333333333, Blast_Score=120, Evalue=1e-28, Organism=Escherichia coli, GI1789032, Length=229, Percent_Identity=31.8777292576419, Blast_Score=118, Evalue=4e-28, Organism=Escherichia coli, GI1789672, Length=246, Percent_Identity=28.8617886178862, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1788225, Length=253, Percent_Identity=29.2490118577075, Blast_Score=101, Evalue=4e-23, Organism=Escherichia coli, GI87081791, Length=251, Percent_Identity=28.2868525896414, Blast_Score=99, Evalue=4e-22, Organism=Escherichia coli, GI1787029, Length=220, Percent_Identity=30.4545454545455, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1788450, Length=267, Percent_Identity=26.5917602996255, Blast_Score=94, Evalue=8e-21, Organism=Escherichia coli, GI87081709, Length=233, Percent_Identity=26.1802575107296, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1786703, Length=214, Percent_Identity=29.4392523364486, Blast_Score=92, Evalue=5e-20, Organism=Escherichia coli, GI1788761, Length=244, Percent_Identity=25.8196721311475, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1789593, Length=250, Percent_Identity=27.6, Blast_Score=84, Evalue=7e-18, Organism=Escherichia coli, GI1787370, Length=236, Percent_Identity=25, Blast_Score=84, Evalue=7e-18, Organism=Escherichia coli, GI1789586, Length=241, Percent_Identity=24.896265560166, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1790162, Length=230, Percent_Identity=25.6521739130435, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1787089, Length=231, Percent_Identity=28.5714285714286, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1789991, Length=269, Percent_Identity=30.1115241635688, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI87081834, Length=207, Percent_Identity=27.0531400966184, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1790467, Length=253, Percent_Identity=24.1106719367589, Blast_Score=81, Evalue=9e-17, Organism=Escherichia coli, GI1786872, Length=215, Percent_Identity=28.3720930232558, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1787143, Length=244, Percent_Identity=29.0983606557377, Blast_Score=79, Evalue=5e-16, Organism=Escherichia coli, GI1790190, Length=227, Percent_Identity=27.3127753303965, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1787182, Length=269, Percent_Identity=27.8810408921933, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI87082267, Length=261, Percent_Identity=24.1379310344828, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI48994943, Length=244, Percent_Identity=26.2295081967213, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1789873, Length=213, Percent_Identity=28.169014084507, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI1786654, Length=238, Percent_Identity=26.4705882352941, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1788165, Length=237, Percent_Identity=23.6286919831224, Blast_Score=71, Evalue=8e-14, Organism=Escherichia coli, GI48995001, Length=225, Percent_Identity=26.6666666666667, Blast_Score=71, Evalue=1e-13, Organism=Escherichia coli, GI1787112, Length=244, Percent_Identity=25.4098360655738, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1787792, Length=209, Percent_Identity=28.2296650717703, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1786698, Length=211, Percent_Identity=26.5402843601896, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI1788644, Length=126, Percent_Identity=28.5714285714286, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI1787105, Length=209, Percent_Identity=27.2727272727273, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1787712, Length=256, Percent_Identity=23.4375, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1786981, Length=219, Percent_Identity=27.8538812785388, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1788210, Length=227, Percent_Identity=25.9911894273128, Blast_Score=62, Evalue=6e-11, Organism=Caenorhabditis elegans, GI71992290, Length=242, Percent_Identity=30.9917355371901, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI193208177, Length=251, Percent_Identity=26.6932270916335, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17541710, Length=239, Percent_Identity=29.7071129707113, Blast_Score=77, Evalue=7e-15, Organism=Caenorhabditis elegans, GI212646699, Length=265, Percent_Identity=24.5283018867925, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17558664, Length=230, Percent_Identity=31.304347826087, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI115535101, Length=235, Percent_Identity=28.936170212766, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17567269, Length=241, Percent_Identity=27.8008298755187, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI193209708, Length=237, Percent_Identity=27.4261603375527, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17569145, Length=236, Percent_Identity=27.1186440677966, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI17567265, Length=228, Percent_Identity=28.5087719298246, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17565938, Length=253, Percent_Identity=26.4822134387352, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17551700, Length=237, Percent_Identity=29.535864978903, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17551702, Length=237, Percent_Identity=29.535864978903, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI193202349, Length=255, Percent_Identity=28.2352941176471, Blast_Score=67, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6323959, Length=256, Percent_Identity=27.34375, Blast_Score=73, Evalue=4e-14, Organism=Saccharomyces cerevisiae, GI6322640, Length=237, Percent_Identity=27.4261603375527, Blast_Score=62, Evalue=7e-11, Organism=Drosophila melanogaster, GI85726357, Length=255, Percent_Identity=26.6666666666667, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI281363262, Length=228, Percent_Identity=29.8245614035088, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI24653245, Length=228, Percent_Identity=29.8245614035088, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI21357907, Length=237, Percent_Identity=25.3164556962025, Blast_Score=72, Evalue=6e-13, Organism=Drosophila melanogaster, GI24666092, Length=220, Percent_Identity=24.0909090909091, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24650853, Length=214, Percent_Identity=27.1028037383178, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI24650855, Length=214, Percent_Identity=27.1028037383178, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI281362751, Length=214, Percent_Identity=27.1028037383178, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI24659289, Length=234, Percent_Identity=28.6324786324786, Blast_Score=65, Evalue=6e-11, Organism=Drosophila melanogaster, GI24581383, Length=222, Percent_Identity=23.4234234234234, Blast_Score=64, Evalue=7e-11, Organism=Drosophila melanogaster, GI24581385, Length=222, Percent_Identity=23.4234234234234, Blast_Score=64, Evalue=7e-11, Organism=Drosophila melanogaster, GI24581387, Length=221, Percent_Identity=23.0769230769231, Blast_Score=64, Evalue=1e-10,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 30521; Mature: 30390
Theoretical pI: Translated: 8.24; Mature: 8.24
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 5.2 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 4.8 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLLTVKHLTITDTWTDQPLVSDVNFTLTKGETLGVIGESGSGKSITCKSIIGLNPERLG CCEEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEEECCCCCCEEEEHHHHCCCHHHCC VTGEIIFDGTSMLSLSESQRKKYRGKDIAMVMQQGSRAFDPSTTVGKQMFETMKVHTSMS CEEEEEECCCHHHHCCHHHHHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCC TQEIEKTLIEYMDYLSLKDPKRILKSYPYMLSGGMLQRLMIALALALKPKLIIADEPTTA HHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHCCHHHHHHHHHHHHHHCCEEEEECCCCHH LDTITQYDVLEAFIDIKKHFDCAMIFISHDLTVINKIADRVVVMKNGQLIEHGTRESVLH HHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHEEEEEECCEEEECCCHHHHHH HPEHVYTKYLLSTKKKINDHFKHVMRGDVHD CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure TLLTVKHLTITDTWTDQPLVSDVNFTLTKGETLGVIGESGSGKSITCKSIIGLNPERLG CEEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEEECCCCCCEEEEHHHHCCCHHHCC VTGEIIFDGTSMLSLSESQRKKYRGKDIAMVMQQGSRAFDPSTTVGKQMFETMKVHTSMS CEEEEEECCCHHHHCCHHHHHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCC TQEIEKTLIEYMDYLSLKDPKRILKSYPYMLSGGMLQRLMIALALALKPKLIIADEPTTA HHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHCCHHHHHHHHHHHHHHCCEEEEECCCCHH LDTITQYDVLEAFIDIKKHFDCAMIFISHDLTVINKIADRVVVMKNGQLIEHGTRESVLH HHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHEEEEEECCEEEECCCHHHHHH HPEHVYTKYLLSTKKKINDHFKHVMRGDVHD CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 1901616; 1899858; 9384377 [H]