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The map label for this gene is ysdC [H]

Identifier: 15925445

GI number: 15925445

Start: 2592257

End: 2593333

Strand: Reverse

Name: ysdC [H]

Synonym: SAV2455

Alternate gene names: 15925445

Gene position: 2593333-2592257 (Counterclockwise)

Preceding gene: 15925446

Following gene: 15925444

Centisome position: 90.09

GC content: 37.51

Gene sequence:

>1077_bases
ATGAATCAGTCAGTCAAATTACTTAAACATTTAACAGATGTAAACGGCATTGCTGGTTATGAAATGCAAGTTAAAGAAGC
AATGCGTAACTATATAGAGCCTGTCAGTGATCAAATTATTGAAGATAACTTGGGTGGCATTTTTGGAAAGAAAAATGCTG
AGAATGGTCAATACTCAATTATGATTTCTGGTCATATGGATGAAGTTGGTTTTATGGTAACAAAGATTGATAAACATGGT
TTTATTTCATTTACGCCAGTTGGTGGATGGTGGAATCAAGTCATGCTATCTCAAAAAGTAACGATTACAACAGATTCGGG
CAAAGAAATTAGAGGTATCATCGGTTCTAAACCGCCACATGTCTTAACGCCTGAAGAACGTAAAAAGCCAATGGAAATCA
AAAATATGTTTATAGATATTGGTGTTAGTAGCAAGGAAGAAGCTGAAGAAGCTGGCGTTGAAGTAGGCAATATGGTAACG
CCATATAGTGAATTTGAAGTGCTTGCAAATGATAAATATTTAACTGCGAAAGCATTTGATAATCGCTATGGCTGTGCATT
AGCTGTTGAGGTATTAAAACGTTTAAAAGATGAAAATATTGGAATTAACTTATACAGTGGTGCCACAGTGCAAGAAGAAG
TTGGTTTGCGTGGTGCGAAAGTGGCAGCGAATACAATTAAACCAGATTTGGCGATAGCTGTCGATGTAGGTATTGCTTAT
GATACCCCAGGTATGTCAGGTCAAACGAGCGATAGTAAACTAGGCGGTGGTCCAGTTGTCATTATGATGGATGCTACAAG
TATTGCTCACCAAGGTTTGCGTAAGCATATTAAAGATGTAGCTAAGGAACATAACATCGAAGTACAATGGGATACGACAC
CAGGTGGAGGTACAGATGCGGGAAGTATTCATGTCGCAAATGAAGGTATTCCAACGATGACAATCGGTGTTACGCTGCGA
TACATGCATTCTAATGTTTCAGTGCTCAATGTAGATGATTATGAAAATTCTATCCGTCTTGTTACTGAAATTGTCCGTTC
ATTGAATGATGAAAGTTATAAAAATATCATGTGGTAA

Upstream 100 bases:

>100_bases
TTAAAAAATTTAAGCCTGAAAATGATAAAGCGGTAGGGAACGTTTTTCTGAAAGTTAGTGATACAATAGTTTTAAGTTGA
AATACAGGAGGATGAATAAC

Downstream 100 bases:

>100_bases
TCAAATCCATAAATAATAAAGAATCCTTTTAATATGGTAGGTTGTTAAACAATTGTCTAACTTTAATTCTTAGTCATTAG
ACAGTATCCATGTTAATAGG

Product: endo-1,4-beta-glucanase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 358; Mature: 358

Protein sequence:

>358_residues
MNQSVKLLKHLTDVNGIAGYEMQVKEAMRNYIEPVSDQIIEDNLGGIFGKKNAENGQYSIMISGHMDEVGFMVTKIDKHG
FISFTPVGGWWNQVMLSQKVTITTDSGKEIRGIIGSKPPHVLTPEERKKPMEIKNMFIDIGVSSKEEAEEAGVEVGNMVT
PYSEFEVLANDKYLTAKAFDNRYGCALAVEVLKRLKDENIGINLYSGATVQEEVGLRGAKVAANTIKPDLAIAVDVGIAY
DTPGMSGQTSDSKLGGGPVVIMMDATSIAHQGLRKHIKDVAKEHNIEVQWDTTPGGGTDAGSIHVANEGIPTMTIGVTLR
YMHSNVSVLNVDDYENSIRLVTEIVRSLNDESYKNIMW

Sequences:

>Translated_358_residues
MNQSVKLLKHLTDVNGIAGYEMQVKEAMRNYIEPVSDQIIEDNLGGIFGKKNAENGQYSIMISGHMDEVGFMVTKIDKHG
FISFTPVGGWWNQVMLSQKVTITTDSGKEIRGIIGSKPPHVLTPEERKKPMEIKNMFIDIGVSSKEEAEEAGVEVGNMVT
PYSEFEVLANDKYLTAKAFDNRYGCALAVEVLKRLKDENIGINLYSGATVQEEVGLRGAKVAANTIKPDLAIAVDVGIAY
DTPGMSGQTSDSKLGGGPVVIMMDATSIAHQGLRKHIKDVAKEHNIEVQWDTTPGGGTDAGSIHVANEGIPTMTIGVTLR
YMHSNVSVLNVDDYENSIRLVTEIVRSLNDESYKNIMW
>Mature_358_residues
MNQSVKLLKHLTDVNGIAGYEMQVKEAMRNYIEPVSDQIIEDNLGGIFGKKNAENGQYSIMISGHMDEVGFMVTKIDKHG
FISFTPVGGWWNQVMLSQKVTITTDSGKEIRGIIGSKPPHVLTPEERKKPMEIKNMFIDIGVSSKEEAEEAGVEVGNMVT
PYSEFEVLANDKYLTAKAFDNRYGCALAVEVLKRLKDENIGINLYSGATVQEEVGLRGAKVAANTIKPDLAIAVDVGIAY
DTPGMSGQTSDSKLGGGPVVIMMDATSIAHQGLRKHIKDVAKEHNIEVQWDTTPGGGTDAGSIHVANEGIPTMTIGVTLR
YMHSNVSVLNVDDYENSIRLVTEIVRSLNDESYKNIMW

Specific function: Putative aminopeptidase [H]

COG id: COG1363

COG function: function code G; Cellulase M and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M42 family [H]

Homologues:

Organism=Escherichia coli, GI1790332, Length=348, Percent_Identity=39.367816091954, Blast_Score=274, Evalue=6e-75,
Organism=Escherichia coli, GI87082417, Length=346, Percent_Identity=33.8150289017341, Blast_Score=187, Evalue=9e-49,
Organism=Escherichia coli, GI1788727, Length=351, Percent_Identity=30.7692307692308, Blast_Score=181, Evalue=9e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008007 [H]

Pfam domain/function: PF05343 Peptidase_M42 [H]

EC number: NA

Molecular weight: Translated: 39179; Mature: 39179

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQSVKLLKHLTDVNGIAGYEMQVKEAMRNYIEPVSDQIIEDNLGGIFGKKNAENGQYSI
CCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEE
MISGHMDEVGFMVTKIDKHGFISFTPVGGWWNQVMLSQKVTITTDSGKEIRGIIGSKPPH
EEECCCCCCCEEEEEECCCCCEEEEECCCHHHHHHHCCEEEEEECCCCHHHHHCCCCCCC
VLTPEERKKPMEIKNMFIDIGVSSKEEAEEAGVEVGNMVTPYSEFEVLANDKYLTAKAFD
CCCCHHHCCCCEEEEEEEEECCCCHHHHHHCCCCCCCCCCCHHHHEEEECCCEEEEEECC
NRYGCALAVEVLKRLKDENIGINLYSGATVQEEVGLRGAKVAANTIKPDLAIAVDVGIAY
CCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHCCCCCEEECCCCCCCEEEEEEEEEEE
DTPGMSGQTSDSKLGGGPVVIMMDATSIAHQGLRKHIKDVAKEHNIEVQWDTTPGGGTDA
CCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCC
GSIHVANEGIPTMTIGVTLRYMHSNVSVLNVDDYENSIRLVTEIVRSLNDESYKNIMW
CEEEEECCCCCEEEEEEEEEEEECCCEEEEECCCCCHHHHHHHHHHHCCCCCHHHCCC
>Mature Secondary Structure
MNQSVKLLKHLTDVNGIAGYEMQVKEAMRNYIEPVSDQIIEDNLGGIFGKKNAENGQYSI
CCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEE
MISGHMDEVGFMVTKIDKHGFISFTPVGGWWNQVMLSQKVTITTDSGKEIRGIIGSKPPH
EEECCCCCCCEEEEEECCCCCEEEEECCCHHHHHHHCCEEEEEECCCCHHHHHCCCCCCC
VLTPEERKKPMEIKNMFIDIGVSSKEEAEEAGVEVGNMVTPYSEFEVLANDKYLTAKAFD
CCCCHHHCCCCEEEEEEEEECCCCHHHHHHCCCCCCCCCCCHHHHEEEECCCEEEEEECC
NRYGCALAVEVLKRLKDENIGINLYSGATVQEEVGLRGAKVAANTIKPDLAIAVDVGIAY
CCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHCCCCCEEECCCCCCCEEEEEEEEEEE
DTPGMSGQTSDSKLGGGPVVIMMDATSIAHQGLRKHIKDVAKEHNIEVQWDTTPGGGTDA
CCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCC
GSIHVANEGIPTMTIGVTLRYMHSNVSVLNVDDYENSIRLVTEIVRSLNDESYKNIMW
CEEEEECCCCCEEEEEEEEEEEECCCEEEEECCCCCHHHHHHHHHHHCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]