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The map label for this gene is seo [H]

Identifier: 15924820

GI number: 15924820

Start: 1958644

End: 1959426

Strand: Reverse

Name: seo [H]

Synonym: SAV1830

Alternate gene names: 15924820

Gene position: 1959426-1958644 (Counterclockwise)

Preceding gene: 15924821

Following gene: 15924819

Centisome position: 68.07

GC content: 25.42

Gene sequence:

>783_bases
ATTAAAAATAGTAAAGTAATGTTAAATGTATTATTATTAATTTTAAATTTAATTGCAATATGTAGTGTAAACAATGCATA
TGCAAATGAAGAAGATCCTAAAATAGAGAGTTTGTGTAAGAAGTCAAGTGTAGACCCTATTGCTTTACATAATATTAATG
ATGATTATATAAATAATCGATTTACGACAGTAAAATCAATTGTATCAACTACAGAAAAATTCTTAGACTTCGATTTATTA
TTTAAAAGTATTAATTGGTTAGATGGAATATCTGCTGAATTTAAAGATTTAAAAGTGGAATTTAGCTCATCAGCGATTTC
TAAAGAATTTCTAGGAAAGACTGTTGATATTTATGGTGTTTACTATAAAGCACATTGTCATGGTGAGCATCAAGTGGATA
CTGCCTGTACATATGGTGGGGTAACACCTCATGAAAATAATAAATTAAGCGAGCCTAAAAATATAGGAGTAGCTGTGTAT
AAGGATAATGTAAATGTTAATACATTTATCGTTACTACAGATAAAAAGAAAGTTACTGCACAAGAACTTGATATTAAAGT
AAGAACAAAATTAAATAATGCATATAAATTGTATGACAGAATGACTAGTGATGTACAAAAAGGTTATATTAAATTTCATT
CTCATTCGGAGCATAAAGAATCATTTTATTATGATTTATTTTATATTAAAGGAAATTTACCAGATCAATATTTGCAAATT
TATAATGATAATAAAACAATAGATTCATCAGACTATCATATTGATGTTTATTTATTTACATAA

Upstream 100 bases:

>100_bases
AAGTTTAAAATCGTAATCTAATAATATTAGTGAATATTTAAAGATTAAAAACAGAATTTTTCAGTTTATTAAGAAAAAAA
TTTTGTGAAGGAGGGATATT

Downstream 100 bases:

>100_bases
CAATCTGAAAGTTGATGGATATCAACTTACAATCCTATAAAGAACTATAGATATTAACATATTTTTACAAAGTAGCTTAG
TAAATGATGAAGAACGAATA

Product: enterotoxin

Products: NA

Alternate protein names: SED [H]

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MKNSKVMLNVLLLILNLIAICSVNNAYANEEDPKIESLCKKSSVDPIALHNINDDYINNRFTTVKSIVSTTEKFLDFDLL
FKSINWLDGISAEFKDLKVEFSSSAISKEFLGKTVDIYGVYYKAHCHGEHQVDTACTYGGVTPHENNKLSEPKNIGVAVY
KDNVNVNTFIVTTDKKKVTAQELDIKVRTKLNNAYKLYDRMTSDVQKGYIKFHSHSEHKESFYYDLFYIKGNLPDQYLQI
YNDNKTIDSSDYHIDVYLFT

Sequences:

>Translated_260_residues
MKNSKVMLNVLLLILNLIAICSVNNAYANEEDPKIESLCKKSSVDPIALHNINDDYINNRFTTVKSIVSTTEKFLDFDLL
FKSINWLDGISAEFKDLKVEFSSSAISKEFLGKTVDIYGVYYKAHCHGEHQVDTACTYGGVTPHENNKLSEPKNIGVAVY
KDNVNVNTFIVTTDKKKVTAQELDIKVRTKLNNAYKLYDRMTSDVQKGYIKFHSHSEHKESFYYDLFYIKGNLPDQYLQI
YNDNKTIDSSDYHIDVYLFT
>Mature_260_residues
MKNSKVMLNVLLLILNLIAICSVNNAYANEEDPKIESLCKKSSVDPIALHNINDDYINNRFTTVKSIVSTTEKFLDFDLL
FKSINWLDGISAEFKDLKVEFSSSAISKEFLGKTVDIYGVYYKAHCHGEHQVDTACTYGGVTPHENNKLSEPKNIGVAVY
KDNVNVNTFIVTTDKKKVTAQELDIKVRTKLNNAYKLYDRMTSDVQKGYIKFHSHSEHKESFYYDLFYIKGNLPDQYLQI
YNDNKTIDSSDYHIDVYLFT

Specific function: Staphylococcal enterotoxins cause the intoxication staphylococcal food poisoning syndrome. The illness characterized by high fever, hypotension, diarrhea, shock, and in some cases death [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the staphylococcal/streptococcal toxin family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008992
- InterPro:   IPR006126
- InterPro:   IPR006173
- InterPro:   IPR016091
- InterPro:   IPR013307
- InterPro:   IPR006123
- InterPro:   IPR006177 [H]

Pfam domain/function: PF02876 Stap_Strp_tox_C; PF01123 Stap_Strp_toxin [H]

EC number: NA

Molecular weight: Translated: 29836; Mature: 29836

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: PS00277 STAPH_STREP_TOXIN_1 ; PS00278 STAPH_STREP_TOXIN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNSKVMLNVLLLILNLIAICSVNNAYANEEDPKIESLCKKSSVDPIALHNINDDYINNR
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCEEEECCCHHHHCCH
FTTVKSIVSTTEKFLDFDLLFKSINWLDGISAEFKDLKVEFSSSAISKEFLGKTVDIYGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEECCHHHHHHHHCCEEEEEEE
YYKAHCHGEHQVDTACTYGGVTPHENNKLSEPKNIGVAVYKDNVNVNTFIVTTDKKKVTA
EEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEECCCCEEEH
QELDIKVRTKLNNAYKLYDRMTSDVQKGYIKFHSHSEHKESFYYDLFYIKGNLPDQYLQI
HHCCEEEEECCCHHHHHHHHHHHHHHHCEEEECCCCCCCCCEEEEEEEEECCCCHHHHEE
YNDNKTIDSSDYHIDVYLFT
ECCCCCCCCCCCEEEEEEEC
>Mature Secondary Structure
MKNSKVMLNVLLLILNLIAICSVNNAYANEEDPKIESLCKKSSVDPIALHNINDDYINNR
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCEEEECCCHHHHCCH
FTTVKSIVSTTEKFLDFDLLFKSINWLDGISAEFKDLKVEFSSSAISKEFLGKTVDIYGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEECCHHHHHHHHCCEEEEEEE
YYKAHCHGEHQVDTACTYGGVTPHENNKLSEPKNIGVAVYKDNVNVNTFIVTTDKKKVTA
EEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEECCCCEEEH
QELDIKVRTKLNNAYKLYDRMTSDVQKGYIKFHSHSEHKESFYYDLFYIKGNLPDQYLQI
HHCCEEEEECCCHHHHHHHHHHHHHHHCEEEECCCCCCCCCEEEEEEEEECCCCHHHHEE
YNDNKTIDSSDYHIDVYLFT
ECCCCCCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2549000; 9003758 [H]