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The map label for this gene is yhdW [H]

Identifier: 15924711

GI number: 15924711

Start: 1841172

End: 1841915

Strand: Reverse

Name: yhdW [H]

Synonym: SAV1721

Alternate gene names: 15924711

Gene position: 1841915-1841172 (Counterclockwise)

Preceding gene: 15924715

Following gene: 15924707

Centisome position: 63.99

GC content: 32.12

Gene sequence:

>744_bases
ATGACTCTGAATAAACTGAAAGATGAATTACAAATTGTTTCGCACCGTGGATTACCGAGTGATTTTCCTGAAAATACAAT
GGTCGGTTATCGAGAGGTAATGGGGCTCAATGTTGCTATGTTAGAAATAGATGTTCATTTGACCAAAGACCAACATTTTG
TTGTGATACATGATGAAACAATTGATAGAACATCGGATGGTAAGGGGCGTATTGCTGATTACACATTATCGCAATTAAAA
TCATTTGATTTTGGTAGTTATAAAGATGTTGCTTTTAAGGGAGAACGAATACCCACGTTAGATGAAGTACTTTCATTATG
CTTAAAGTATGATAAAAAGCTATTGATTGAATTGAAAAGTCCGAATTTATATCCAGAAATAGAATGTAAATTGCTGGCAT
TTTTGGAAGAAAAGAAAGTCGATGCGACACAAGTAGTTATACAATCTTTTGATATCGAATGCATCGAAAAGTTAAACACA
TTGGGCAGTATATATGAATTAGGTGTGCTTTCTAGTAAACGTAATTATTGGTATAAAAAGCCAAACTTTTCAAGAATTGC
TCAAATTGCTAGTTATGTTAATCCTAATTATGCATTAGTGGCCAGAAAATTTGTTGATAAAGCACATCATCATCAATTAC
AGGTTATGCCATACACAGTTAATAAATTGAAAACTGGAGAAAAATTAAGACAAATGGGTGTAGATGGATTAATTACAGAT
AATCCGAAATTATTTATTAAGTGA

Upstream 100 bases:

>100_bases
TTTAAAGTCATGTTGATGCAATTGCTTTAACCTCCAATATAATTGTGATAGTTTAATTTTAGAATAGTTTATCAAAGTTT
AACAGAAAGGTGACTTATCA

Downstream 100 bases:

>100_bases
GACGATGAATGGTAATTTGATAGAGGGATGAGGATTCGTATATCGCAATTGATAATTTTAAAAACTAATGATGAAATACT
AAAGATAATTAAACAAATAA

Product: glycerophosphoryl diester phosphodiesterase

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 247; Mature: 246

Protein sequence:

>247_residues
MTLNKLKDELQIVSHRGLPSDFPENTMVGYREVMGLNVAMLEIDVHLTKDQHFVVIHDETIDRTSDGKGRIADYTLSQLK
SFDFGSYKDVAFKGERIPTLDEVLSLCLKYDKKLLIELKSPNLYPEIECKLLAFLEEKKVDATQVVIQSFDIECIEKLNT
LGSIYELGVLSSKRNYWYKKPNFSRIAQIASYVNPNYALVARKFVDKAHHHQLQVMPYTVNKLKTGEKLRQMGVDGLITD
NPKLFIK

Sequences:

>Translated_247_residues
MTLNKLKDELQIVSHRGLPSDFPENTMVGYREVMGLNVAMLEIDVHLTKDQHFVVIHDETIDRTSDGKGRIADYTLSQLK
SFDFGSYKDVAFKGERIPTLDEVLSLCLKYDKKLLIELKSPNLYPEIECKLLAFLEEKKVDATQVVIQSFDIECIEKLNT
LGSIYELGVLSSKRNYWYKKPNFSRIAQIASYVNPNYALVARKFVDKAHHHQLQVMPYTVNKLKTGEKLRQMGVDGLITD
NPKLFIK
>Mature_246_residues
TLNKLKDELQIVSHRGLPSDFPENTMVGYREVMGLNVAMLEIDVHLTKDQHFVVIHDETIDRTSDGKGRIADYTLSQLKS
FDFGSYKDVAFKGERIPTLDEVLSLCLKYDKKLLIELKSPNLYPEIECKLLAFLEEKKVDATQVVIQSFDIECIEKLNTL
GSIYELGVLSSKRNYWYKKPNFSRIAQIASYVNPNYALVARKFVDKAHHHQLQVMPYTVNKLKTGEKLRQMGVDGLITDN
PKLFIK

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

Organism=Homo sapiens, GI7706617, Length=118, Percent_Identity=33.0508474576271, Blast_Score=84, Evalue=1e-16,
Organism=Escherichia coli, GI1789858, Length=232, Percent_Identity=28.0172413793103, Blast_Score=92, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17542344, Length=120, Percent_Identity=33.3333333333333, Blast_Score=77, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17561436, Length=146, Percent_Identity=28.0821917808219, Blast_Score=65, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 28359; Mature: 28228

Theoretical pI: Translated: 8.07; Mature: 8.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLNKLKDELQIVSHRGLPSDFPENTMVGYREVMGLNVAMLEIDVHLTKDQHFVVIHDET
CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCEEEEEEEEEEEECCCEEEEEECCC
IDRTSDGKGRIADYTLSQLKSFDFGSYKDVAFKGERIPTLDEVLSLCLKYDKKLLIELKS
CCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCEEEEEECC
PNLYPEIECKLLAFLEEKKVDATQVVIQSFDIECIEKLNTLGSIYELGVLSSKRNYWYKK
CCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PNFSRIAQIASYVNPNYALVARKFVDKAHHHQLQVMPYTVNKLKTGEKLRQMGVDGLITD
CCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEEEEEEHHHHHHHHHHHHCCCCCEEEC
NPKLFIK
CCEEEEC
>Mature Secondary Structure 
TLNKLKDELQIVSHRGLPSDFPENTMVGYREVMGLNVAMLEIDVHLTKDQHFVVIHDET
CHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCEEEEEEEEEEEECCCEEEEEECCC
IDRTSDGKGRIADYTLSQLKSFDFGSYKDVAFKGERIPTLDEVLSLCLKYDKKLLIELKS
CCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCEEEEEECC
PNLYPEIECKLLAFLEEKKVDATQVVIQSFDIECIEKLNTLGSIYELGVLSSKRNYWYKK
CCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PNFSRIAQIASYVNPNYALVARKFVDKAHHHQLQVMPYTVNKLKTGEKLRQMGVDGLITD
CCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEEEEEEHHHHHHHHHHHHCCCCCEEEC
NPKLFIK
CCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]