Click here to switch to the map view.

The map label for this gene is ymdB [C]

Identifier: 15923315

GI number: 15923315

Start: 371501

End: 372301

Strand: Direct

Name: ymdB [C]

Synonym: SAV0325

Alternate gene names: 15923315

Gene position: 371501-372301 (Clockwise)

Preceding gene: 15923314

Following gene: 15923316

Centisome position: 12.91

GC content: 36.33

Gene sequence:

>801_bases
ATGGAAACGTTAAAATCAAATAAAGCGAGACTTGAATATTTAATCAATGATATGCGTCGAGAGAGAAATGACAATGACGT
ATTGGTAATGCCATCTTCATTTGAAGATTTGTGGGAATTATATCGAGGCTTGGCAAATGTCAGACCGGCATTACCTGTAA
GTGATGAATATTTAGCTGTACAAGATGCTATGTTAAGTGATTTGAATCATCAACATGTTACGGATTTGAAGGATTTGAAG
CCGATAAAAGGTGACAATATCTTTGTTTGGCAAGGTGATATCACGACGTTAAAAATCGATGCTATTGTTAATGCTGCAAA
TAGTCGTTTTCTAGGATGTATGCAAGCTAATCATGACTGCATTGATAATATTATTCATACAAAAGCGGGTGTTCAAGTTC
GACTTGATTGTGCAGAGATCATTCGACAACAAGGGCGCAATGAAGGTGTAGGTAAAGCCAAAAAAACACGTGGATATAAT
TTGCCAGCAAAGTATATAATTCATACGGTTGGTCCGCAAATACGTCGATTGCCTGTTTCAAAGATGAATCAGGACTTGTT
AGCTAAATGTTATCTTAGCTGTCTTAAATTGGCTGATCAACATAGTTTAAATCATGTCGCTTTTTGCTGTATATCTACAG
GTGTATTTGCTTTTCCTCAAGATGAAGCAGCAGAAATTGCTGTTCGAACAGTAGAAAGCTATCTCAAAGAAACAAATTCA
ACATTGAAAGTCGTGTTCAATGTATTTACAGATAAGGATTTACAACTGTATAAGGAGGCATTGAACCGTGATGCAGAGTA
G

Upstream 100 bases:

>100_bases
AGAACCGACAATTTTAAACTCTGAAAAACCAGAAGAAAATTGGTTGTTCAAATTGGATGATGTCGATAAAGAAGCATTCC
TAGCATTACCGGAGGCTTAA

Downstream 100 bases:

>100_bases
TAAATGGAATGCAATGTCTCTTTTAATGGATGAAAAGACAAAGCAGGCTGAAGTATTGCGTACTGCGATTGATGAAGCAG
ATGCGATAGTGATTGGAATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
METLKSNKARLEYLINDMRRERNDNDVLVMPSSFEDLWELYRGLANVRPALPVSDEYLAVQDAMLSDLNHQHVTDLKDLK
PIKGDNIFVWQGDITTLKIDAIVNAANSRFLGCMQANHDCIDNIIHTKAGVQVRLDCAEIIRQQGRNEGVGKAKKTRGYN
LPAKYIIHTVGPQIRRLPVSKMNQDLLAKCYLSCLKLADQHSLNHVAFCCISTGVFAFPQDEAAEIAVRTVESYLKETNS
TLKVVFNVFTDKDLQLYKEALNRDAE

Sequences:

>Translated_266_residues
METLKSNKARLEYLINDMRRERNDNDVLVMPSSFEDLWELYRGLANVRPALPVSDEYLAVQDAMLSDLNHQHVTDLKDLK
PIKGDNIFVWQGDITTLKIDAIVNAANSRFLGCMQANHDCIDNIIHTKAGVQVRLDCAEIIRQQGRNEGVGKAKKTRGYN
LPAKYIIHTVGPQIRRLPVSKMNQDLLAKCYLSCLKLADQHSLNHVAFCCISTGVFAFPQDEAAEIAVRTVESYLKETNS
TLKVVFNVFTDKDLQLYKEALNRDAE
>Mature_266_residues
METLKSNKARLEYLINDMRRERNDNDVLVMPSSFEDLWELYRGLANVRPALPVSDEYLAVQDAMLSDLNHQHVTDLKDLK
PIKGDNIFVWQGDITTLKIDAIVNAANSRFLGCMQANHDCIDNIIHTKAGVQVRLDCAEIIRQQGRNEGVGKAKKTRGYN
LPAKYIIHTVGPQIRRLPVSKMNQDLLAKCYLSCLKLADQHSLNHVAFCCISTGVFAFPQDEAAEIAVRTVESYLKETNS
TLKVVFNVFTDKDLQLYKEALNRDAE

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=180, Percent_Identity=39.4444444444444, Blast_Score=130, Evalue=2e-30,
Organism=Homo sapiens, GI13569840, Length=178, Percent_Identity=41.0112359550562, Blast_Score=122, Evalue=2e-28,
Organism=Homo sapiens, GI207450721, Length=163, Percent_Identity=33.1288343558282, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI8923143, Length=163, Percent_Identity=33.1288343558282, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI20336746, Length=171, Percent_Identity=29.8245614035088, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI154813199, Length=185, Percent_Identity=27.5675675675676, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI93141018, Length=162, Percent_Identity=28.3950617283951, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI93141020, Length=162, Percent_Identity=28.3950617283951, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI4758496, Length=162, Percent_Identity=28.3950617283951, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI1787283, Length=181, Percent_Identity=38.6740331491713, Blast_Score=110, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17538214, Length=175, Percent_Identity=39.4285714285714, Blast_Score=113, Evalue=8e-26,
Organism=Drosophila melanogaster, GI24586353, Length=161, Percent_Identity=35.4037267080745, Blast_Score=92, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 30110; Mature: 30110

Theoretical pI: Translated: 6.86; Mature: 6.86

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METLKSNKARLEYLINDMRRERNDNDVLVMPSSFEDLWELYRGLANVRPALPVSDEYLAV
CCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCHHHH
QDAMLSDLNHQHVTDLKDLKPIKGDNIFVWQGDITTLKIDAIVNAANSRFLGCMQANHDC
HHHHHHHCCCHHHHHHHHCCCCCCCEEEEEECCCEEEEHHHHHHHCCCCEEEHHHCCHHH
IDNIIHTKAGVQVRLDCAEIIRQQGRNEGVGKAKKTRGYNLPAKYIIHTVGPQIRRLPVS
HHHHHHHCCCCEEEECHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCHHHHHCCHH
KMNQDLLAKCYLSCLKLADQHSLNHVAFCCISTGVFAFPQDEAAEIAVRTVESYLKETNS
HCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCEEECCCCHHHHHHHHHHHHHHHHCCC
TLKVVFNVFTDKDLQLYKEALNRDAE
HHHHHHHHHCCCHHHHHHHHHCCCCC
>Mature Secondary Structure
METLKSNKARLEYLINDMRRERNDNDVLVMPSSFEDLWELYRGLANVRPALPVSDEYLAV
CCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCHHHH
QDAMLSDLNHQHVTDLKDLKPIKGDNIFVWQGDITTLKIDAIVNAANSRFLGCMQANHDC
HHHHHHHCCCHHHHHHHHCCCCCCCEEEEEECCCEEEEHHHHHHHCCCCEEEHHHCCHHH
IDNIIHTKAGVQVRLDCAEIIRQQGRNEGVGKAKKTRGYNLPAKYIIHTVGPQIRRLPVS
HHHHHHHCCCCEEEECHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCHHHHHCCHH
KMNQDLLAKCYLSCLKLADQHSLNHVAFCCISTGVFAFPQDEAAEIAVRTVESYLKETNS
HCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCEEECCCCHHHHHHHHHHHHHHHHCCC
TLKVVFNVFTDKDLQLYKEALNRDAE
HHHHHHHHHCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA