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The map label for this gene is yodF [H]

Identifier: 15898897

GI number: 15898897

Start: 1937245

End: 1938825

Strand: Reverse

Name: yodF [H]

Synonym: SSO2113

Alternate gene names: 15898897

Gene position: 1938825-1937245 (Counterclockwise)

Preceding gene: 15898898

Following gene: 15898895

Centisome position: 64.79

GC content: 39.72

Gene sequence:

>1581_bases
ATGGATGGTTTACACGTTTCTATCGTTTCAGTTGCTCTGTTTATAATTTTATTTGTAATTTTTGTGTTTTTAGGCTTTTA
TGGAAGCAGATGGAGAAGAGGAGATCTATCGAAACTTCACGAATGGGCTTTAGCGGGGAGAAGATTAGGACCATATTTAA
TGTGGTTTCTTCTCACTGCAGACCTATATACTGCATATACATTTATTGCAGTACCTTCTCTAGTCTTAGCCAGCGGTCCA
GTTGGATTTTTTGCAGCCTTCTACTCTGCGGTCACGCCCTTCATAGCCCTACTCTTCATGCCTAGACTGTGGACAATTGC
TAAGAACAGAGGGTATGTTACAGCAGCGGATTTCATTAAGGATAGATTTAACAGTAGGATTCTAGCAGGGCTTGTAGCTA
TAACAGGGGTAGTAGCTGAATTGCCTTACATAGCATTACAAATAGTAGGTATGCAAGTAGCATTACTCATATTATTGCTA
GGATTGGGAGTTAGTAACATTACATTGGCAAGTGATTTAAGTCTTTTAGTAGCCTTCATAATCTTAGCTGCATTCGTATT
CACAAGTGGACTAAGGGGAGCTGCGCTAACTGCAGTATATAAGGACATCATAATTTTAGGTACAATAATAAGTATTGCGA
TCTACGTTCCACTGGCCTTTGGAGGATTTTCTGGTGCATTTCATAATGCCCAAACGTTAAGCTCCCAGATTAACTTAGCG
TTAAATAACGTTAATAAGCCAATTTTCTACAACTATTTACCTAACACCCTAGCTGCGCGAACTGCTTATATTTCTTTAGC
TATCGGGAGCGCATTTGCCCTCTATCTATATCCCCACGCGGTTAATGCAAGCGTGAGTTCAGATTCTAAGAAATCCCTTA
AATTATCACTAGCATTACAACCCTTCTATTCTATCATATTAGCTGTTATAGCCTTGTTTGGAATTCTAGTCTACGCTAAT
TCTAAAGTGGTTAATTTTATTGCTAAAACACACTCCGGTGCAGTAGCTGTCCCTGCTCTAATAGGCTATTCAATGCCAGA
TTGGTTTGTTGGGATAGCATTGTTAGGAATTTTCATAGGGGGATTAGTCCCCGCAGCTATAATGGCAATTGGAGCAGCTA
ATTTACTCACAAGGAACATAATAAAGGAGTTTAAACCTAATATGTCTCCTAGTACTGAATCAGCCTTAGCTAAATGGATA
TCTACCGCGTTTAAATTTTTGGCTTTAGCTCTAGTATTTGCCACACCCTCAACATACGCCATACAGCTGCAATTATTGGG
AGGTATAATCATTCTACAAACCTTGCCTTCAGTATTCCTAGGACTTTACACTAGCAAACTCAACGGTTATGCGTTAGTAG
GAGGTTGGGCGGGAGGTATGTTCAGCGGGATATATCTAACGTTATTGGCTAATCACTTCGGACCATTAAAAACCTCATCC
TTCATAACACCGTTAGGACCAATGTACATAGGAGTACTATCAACTCTAATTAATTTAGCCATAGGACTAATTGGGACCGC
AATAGCTTATGGCGCTGGCTGGAGACCAGTAAGTAACATAAGAGCAGAAGAAATAGCTTAA

Upstream 100 bases:

>100_bases
TTACTGGGACTGCCACTATTTTACTGGTATCAAATAATTCTAATGCCAATAGGTGCTCTCGTATTCACAGCAATTGTAAT
GGTTATAAGGGATTGAGAAC

Downstream 100 bases:

>100_bases
GTTATTACTTTTTTTTATCTCAAATCATTTTTAGTAATTTTTATTTTGAGATAAATGAAAATCAACTCTTCTTGACAAGT
TTTTCGGCGTTATGTTTCAG

Product: metabolite permease, putative

Products: Na (I) [Cytoplasm]; pantothenate [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 526; Mature: 526

Protein sequence:

>526_residues
MDGLHVSIVSVALFIILFVIFVFLGFYGSRWRRGDLSKLHEWALAGRRLGPYLMWFLLTADLYTAYTFIAVPSLVLASGP
VGFFAAFYSAVTPFIALLFMPRLWTIAKNRGYVTAADFIKDRFNSRILAGLVAITGVVAELPYIALQIVGMQVALLILLL
GLGVSNITLASDLSLLVAFIILAAFVFTSGLRGAALTAVYKDIIILGTIISIAIYVPLAFGGFSGAFHNAQTLSSQINLA
LNNVNKPIFYNYLPNTLAARTAYISLAIGSAFALYLYPHAVNASVSSDSKKSLKLSLALQPFYSIILAVIALFGILVYAN
SKVVNFIAKTHSGAVAVPALIGYSMPDWFVGIALLGIFIGGLVPAAIMAIGAANLLTRNIIKEFKPNMSPSTESALAKWI
STAFKFLALALVFATPSTYAIQLQLLGGIIILQTLPSVFLGLYTSKLNGYALVGGWAGGMFSGIYLTLLANHFGPLKTSS
FITPLGPMYIGVLSTLINLAIGLIGTAIAYGAGWRPVSNIRAEEIA

Sequences:

>Translated_526_residues
MDGLHVSIVSVALFIILFVIFVFLGFYGSRWRRGDLSKLHEWALAGRRLGPYLMWFLLTADLYTAYTFIAVPSLVLASGP
VGFFAAFYSAVTPFIALLFMPRLWTIAKNRGYVTAADFIKDRFNSRILAGLVAITGVVAELPYIALQIVGMQVALLILLL
GLGVSNITLASDLSLLVAFIILAAFVFTSGLRGAALTAVYKDIIILGTIISIAIYVPLAFGGFSGAFHNAQTLSSQINLA
LNNVNKPIFYNYLPNTLAARTAYISLAIGSAFALYLYPHAVNASVSSDSKKSLKLSLALQPFYSIILAVIALFGILVYAN
SKVVNFIAKTHSGAVAVPALIGYSMPDWFVGIALLGIFIGGLVPAAIMAIGAANLLTRNIIKEFKPNMSPSTESALAKWI
STAFKFLALALVFATPSTYAIQLQLLGGIIILQTLPSVFLGLYTSKLNGYALVGGWAGGMFSGIYLTLLANHFGPLKTSS
FITPLGPMYIGVLSTLINLAIGLIGTAIAYGAGWRPVSNIRAEEIA
>Mature_526_residues
MDGLHVSIVSVALFIILFVIFVFLGFYGSRWRRGDLSKLHEWALAGRRLGPYLMWFLLTADLYTAYTFIAVPSLVLASGP
VGFFAAFYSAVTPFIALLFMPRLWTIAKNRGYVTAADFIKDRFNSRILAGLVAITGVVAELPYIALQIVGMQVALLILLL
GLGVSNITLASDLSLLVAFIILAAFVFTSGLRGAALTAVYKDIIILGTIISIAIYVPLAFGGFSGAFHNAQTLSSQINLA
LNNVNKPIFYNYLPNTLAARTAYISLAIGSAFALYLYPHAVNASVSSDSKKSLKLSLALQPFYSIILAVIALFGILVYAN
SKVVNFIAKTHSGAVAVPALIGYSMPDWFVGIALLGIFIGGLVPAAIMAIGAANLLTRNIIKEFKPNMSPSTESALAKWI
STAFKFLALALVFATPSTYAIQLQLLGGIIILQTLPSVFLGLYTSKLNGYALVGGWAGGMFSGIYLTLLANHFGPLKTSS
FITPLGPMYIGVLSTLINLAIGLIGTAIAYGAGWRPVSNIRAEEIA

Specific function: Catalyzes The Sodium-Dependent Uptake Of Extracellular Pantothenate. [C]

COG id: COG0591

COG function: function code ER; Na+/proline symporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001734 [H]

Pfam domain/function: PF00474 SSF [H]

EC number: NA

Molecular weight: Translated: 56212; Mature: 56212

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: PS50283 NA_SOLUT_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCHHHCC
>Mature Secondary Structure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CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Na (I) [Periplasm]; pantothenate [Periplasm] [C]

Specific reaction: Na (I) [Periplasm] + pantothenate [Periplasm] = Na (I) [Cytoplasm] + pantothenate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]