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The map label for this gene is ygiD [H]

Identifier: 15898842

GI number: 15898842

Start: 1870810

End: 1871598

Strand: Reverse

Name: ygiD [H]

Synonym: SSO2052

Alternate gene names: 15898842

Gene position: 1871598-1870810 (Counterclockwise)

Preceding gene: 15898843

Following gene: 15898840

Centisome position: 62.55

GC content: 35.99

Gene sequence:

>789_bases
TTGGAGTTCTTGTTAATGACAATTGGCTTATTTATATCTCATGGTTCTCCTACAATACTGATTGATGAGAATAAGTGGAA
GGACTTATTGAGAAGAGTAGGAAAGGAAATTGAGGAGAAGTATAAACCAGAAACAATAATAGTCTCAAGTCCCCATTTCG
TCTCATGGACGGAAACCTTCTATATTGAAAGCAGTGAGAAGCTAGAGTGTATTCAAGATTATTACGATTTCCCAGATGAG
ACTTATAAATACTGTTATAACGCGTTAAATGACACTGAACTAGTTGAAGAAATAGTGAAAAACGCTGAGGGAAAAGTAGT
GAAAGATGATAAATGGGGATTAGATCACGGTGCGTGGATTCCCCTCTTCTACATGTTTCCCGAGTATAAACCAAAAGTTG
TAACAATATCAATTACTGACAATTCGCCAGAATCACACTATGAAATAGGTGAAAAGATTAGGAAAGCAGTAGAGAAACTT
GGAAGGAAAGCAGTGTTTTTAGCCACTGGTTCACCAACTCATAGGTTAGACTTGTTTTACTTTAAGATAACTCCTAAACC
TACAAAATTCGATGCGATATTAATGGATCTAATAAAATCTGGTGAATTTGAGAAAATATTAAAAATTAGTGAACTTTATC
CTAAGGAGTATCAGACTGCAATGCCAGAGGGAAATTTAAATACTCTACACATGCTCTTAGGGTATATTAAACCAAAGAAG
GCTGAGATACTAGGATATGATACACCTTGGCCCGGAGTTAGTATGCTAGCCGCAAGCTTTTATGAGTAA

Upstream 100 bases:

>100_bases
AAAGCACGAATTCGTCAAATTGGTTAAGGATATAATCGATCAGATGCCTAATCCTAAAGCTTAAGTGAACAAAAGTTAAC
TTAATTTTTTATTTATATTT

Downstream 100 bases:

>100_bases
AAGACTCATTTTTAGACATGCGTTTTTGTCCTAGATGCGGTTCGGCGAGAGCTATATTACTTAATAAGAAGAAAAGATTG
TATAGGTGCATGACGTGTAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MEFLLMTIGLFISHGSPTILIDENKWKDLLRRVGKEIEEKYKPETIIVSSPHFVSWTETFYIESSEKLECIQDYYDFPDE
TYKYCYNALNDTELVEEIVKNAEGKVVKDDKWGLDHGAWIPLFYMFPEYKPKVVTISITDNSPESHYEIGEKIRKAVEKL
GRKAVFLATGSPTHRLDLFYFKITPKPTKFDAILMDLIKSGEFEKILKISELYPKEYQTAMPEGNLNTLHMLLGYIKPKK
AEILGYDTPWPGVSMLAASFYE

Sequences:

>Translated_262_residues
MEFLLMTIGLFISHGSPTILIDENKWKDLLRRVGKEIEEKYKPETIIVSSPHFVSWTETFYIESSEKLECIQDYYDFPDE
TYKYCYNALNDTELVEEIVKNAEGKVVKDDKWGLDHGAWIPLFYMFPEYKPKVVTISITDNSPESHYEIGEKIRKAVEKL
GRKAVFLATGSPTHRLDLFYFKITPKPTKFDAILMDLIKSGEFEKILKISELYPKEYQTAMPEGNLNTLHMLLGYIKPKK
AEILGYDTPWPGVSMLAASFYE
>Mature_262_residues
MEFLLMTIGLFISHGSPTILIDENKWKDLLRRVGKEIEEKYKPETIIVSSPHFVSWTETFYIESSEKLECIQDYYDFPDE
TYKYCYNALNDTELVEEIVKNAEGKVVKDDKWGLDHGAWIPLFYMFPEYKPKVVTISITDNSPESHYEIGEKIRKAVEKL
GRKAVFLATGSPTHRLDLFYFKITPKPTKFDAILMDLIKSGEFEKILKISELYPKEYQTAMPEGNLNTLHMLLGYIKPKK
AEILGYDTPWPGVSMLAASFYE

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=170, Percent_Identity=28.2352941176471, Blast_Score=75, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 30381; Mature: 30381

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFLLMTIGLFISHGSPTILIDENKWKDLLRRVGKEIEEKYKPETIIVSSPHFVSWTETF
CHHHHEEHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEEE
YIESSEKLECIQDYYDFPDETYKYCYNALNDTELVEEIVKNAEGKVVKDDKWGLDHGAWI
EEECCCHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCEEECCCCCCCCCCCE
PLFYMFPEYKPKVVTISITDNSPESHYEIGEKIRKAVEKLGRKAVFLATGSPTHRLDLFY
EHEEECCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCEEEEEE
FKITPKPTKFDAILMDLIKSGEFEKILKISELYPKEYQTAMPEGNLNTLHMLLGYIKPKK
EEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHCCCCC
AEILGYDTPWPGVSMLAASFYE
CEEEECCCCCCCHHHHHHHHCC
>Mature Secondary Structure
MEFLLMTIGLFISHGSPTILIDENKWKDLLRRVGKEIEEKYKPETIIVSSPHFVSWTETF
CHHHHEEHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEEE
YIESSEKLECIQDYYDFPDETYKYCYNALNDTELVEEIVKNAEGKVVKDDKWGLDHGAWI
EEECCCHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCEEECCCCCCCCCCCE
PLFYMFPEYKPKVVTISITDNSPESHYEIGEKIRKAVEKLGRKAVFLATGSPTHRLDLFY
EHEEECCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCEEEEEE
FKITPKPTKFDAILMDLIKSGEFEKILKISELYPKEYQTAMPEGNLNTLHMLLGYIKPKK
EEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHCCCCC
AEILGYDTPWPGVSMLAASFYE
CEEEECCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]