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The map label for this gene is rhmD [H]

Identifier: 15898145

GI number: 15898145

Start: 1132569

End: 1133720

Strand: Direct

Name: rhmD [H]

Synonym: SSO1303

Alternate gene names: 15898145

Gene position: 1132569-1133720 (Clockwise)

Preceding gene: 15898138

Following gene: 15898148

Centisome position: 37.85

GC content: 38.28

Gene sequence:

>1152_bases
TTGATAAAAGGATGCTCAGACAAATGTTATAGTATGACTGCAAAAATTGATAAGATATACGTAGTTACTACGGAAAGAAT
TTCAAGGCAGAATTTTCCTTACGTTAAACCGACTGATTATTACAGAGAATATTTGGGATCTTTATCGCCATTTCAATCAG
CGTTCATGGATAAGGTTTGCTTTATAAGAATGGATCTAGACGATAACGTCACTTATTCCATTCTTGAAACCTCTGAGTCT
GTGTGTAATTTCGTAATGTCAAATTTAGCTGATCTGGTTAGGGGTTTACCCGTTTCTAGGATAAACATGGTGTGGGATTT
GTTATATAGATATACCTTGCCAATTGGCAGGAGTGGGATAGCAATTCATGCAATAAGTGTTATTAATCTTTTAATGTACG
ATGCATATGCCAAGTTGCTGGGAGTTCCAGTTTACGAACTATTAGGAGGAAAAGCTAGGGATAAGATAAGGGCTTACGCT
AGTCATCTACATCCCACAAGTAAGGATGAGTTAGAGAAGGAGGCTAGGAGTTATGTAGAGGAAGGATACGCTGCAATGAA
GATGAGGTTCTGCTGTGGCCCCTCTGATCCTCTAGGTGTTGATAAGAACGTTGAATTGGTAAAAGTTATAAGGGATAGTG
TTGGATATTCAGTGGATTTGGCTGGGGATGCGTGGATGTCTTGGAATTTGAATTTCGCGTTAAAGATGGCTAGGAGATTG
GAGAAATATGAGTTAAGTTGGATTGAGGAACCTTTATTACCGGATGACTTTGAGTCTTATAGTTACTTAAGTAAGAGAAC
AGATATTCCAATATCTGCTGGTGAACATCACTATCACGTTTACGATTTCAAGAGGCTTTTGGATTCCGGAGTGAGAATAT
TACAGCCCGATGCCGTATGGGTTGGAGGGATAACTCCAATGAAGAGAATTACTGGATTGGCTGAAGCTTATGGTGGTGTT
GTAATCCCTCATACTTCTAACATATACAATTTGCACTTTATAATATCAGAACCAGAAAGTGTTTCGCCAATGGCTGAGTA
CTTAACCAAATATAAATGGCTAGAGGATAGAATGATAAATCCTCCTAAGCCAATAAAGGGATATTTCGAATTGGGAGAAG
AAAAAGGTTTTGGCTTAAAGTATGACCTTTAA

Upstream 100 bases:

>100_bases
TTCCGTATGATAGGAATAGAGTCTTGCCCTTTAAAGTCTCAGAAAGTATAAATATAAGCTTTATGTGATTCTCGTACTTA
TCCACACAAGTTAGGGTTAA

Downstream 100 bases:

>100_bases
TAGTTTATTTGTTGCCAAGAGGTCTTGTATTCACTTCTACTACTTTAGATACTGGAACTTTACCTCCATAAAAGTCCTTT
ATTACCACCTCTAAGGATTT

Product: mandelate racemase/muconate lactonizing family protein

Products: NA

Alternate protein names: RhamD [H]

Number of amino acids: Translated: 383; Mature: 383

Protein sequence:

>383_residues
MIKGCSDKCYSMTAKIDKIYVVTTERISRQNFPYVKPTDYYREYLGSLSPFQSAFMDKVCFIRMDLDDNVTYSILETSES
VCNFVMSNLADLVRGLPVSRINMVWDLLYRYTLPIGRSGIAIHAISVINLLMYDAYAKLLGVPVYELLGGKARDKIRAYA
SHLHPTSKDELEKEARSYVEEGYAAMKMRFCCGPSDPLGVDKNVELVKVIRDSVGYSVDLAGDAWMSWNLNFALKMARRL
EKYELSWIEEPLLPDDFESYSYLSKRTDIPISAGEHHYHVYDFKRLLDSGVRILQPDAVWVGGITPMKRITGLAEAYGGV
VIPHTSNIYNLHFIISEPESVSPMAEYLTKYKWLEDRMINPPKPIKGYFELGEEKGFGLKYDL

Sequences:

>Translated_383_residues
MIKGCSDKCYSMTAKIDKIYVVTTERISRQNFPYVKPTDYYREYLGSLSPFQSAFMDKVCFIRMDLDDNVTYSILETSES
VCNFVMSNLADLVRGLPVSRINMVWDLLYRYTLPIGRSGIAIHAISVINLLMYDAYAKLLGVPVYELLGGKARDKIRAYA
SHLHPTSKDELEKEARSYVEEGYAAMKMRFCCGPSDPLGVDKNVELVKVIRDSVGYSVDLAGDAWMSWNLNFALKMARRL
EKYELSWIEEPLLPDDFESYSYLSKRTDIPISAGEHHYHVYDFKRLLDSGVRILQPDAVWVGGITPMKRITGLAEAYGGV
VIPHTSNIYNLHFIISEPESVSPMAEYLTKYKWLEDRMINPPKPIKGYFELGEEKGFGLKYDL
>Mature_383_residues
MIKGCSDKCYSMTAKIDKIYVVTTERISRQNFPYVKPTDYYREYLGSLSPFQSAFMDKVCFIRMDLDDNVTYSILETSES
VCNFVMSNLADLVRGLPVSRINMVWDLLYRYTLPIGRSGIAIHAISVINLLMYDAYAKLLGVPVYELLGGKARDKIRAYA
SHLHPTSKDELEKEARSYVEEGYAAMKMRFCCGPSDPLGVDKNVELVKVIRDSVGYSVDLAGDAWMSWNLNFALKMARRL
EKYELSWIEEPLLPDDFESYSYLSKRTDIPISAGEHHYHVYDFKRLLDSGVRILQPDAVWVGGITPMKRITGLAEAYGGV
VIPHTSNIYNLHFIISEPESVSPMAEYLTKYKWLEDRMINPPKPIKGYFELGEEKGFGLKYDL

Specific function: Catalyzes the dehydration of L-rhamnonate to 2-keto-3- deoxy-L-rhamnonate (KDR) [H]

COG id: COG4948

COG function: function code MR; L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mandelate racemase/muconate lactonizing enzyme family. RhamD subfamily [H]

Homologues:

Organism=Escherichia coli, GI226510960, Length=359, Percent_Identity=30.3621169916435, Blast_Score=176, Evalue=2e-45,
Organism=Escherichia coli, GI48994953, Length=271, Percent_Identity=32.8413284132841, Blast_Score=131, Evalue=7e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018110
- InterPro:   IPR013342
- InterPro:   IPR013341
- InterPro:   IPR001354 [H]

Pfam domain/function: PF01188 MR_MLE; PF02746 MR_MLE_N [H]

EC number: =4.2.1.90 [H]

Molecular weight: Translated: 43768; Mature: 43768

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKGCSDKCYSMTAKIDKIYVVTTERISRQNFPYVKPTDYYREYLGSLSPFQSAFMDKVC
CCCCCCCHHHHHHEECCEEEEEEHHHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHHCCEE
FIRMDLDDNVTYSILETSESVCNFVMSNLADLVRGLPVSRINMVWDLLYRYTLPIGRSGI
EEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCH
AIHAISVINLLMYDAYAKLLGVPVYELLGGKARDKIRAYASHLHPTSKDELEKEARSYVE
HHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
EGYAAMKMRFCCGPSDPLGVDKNVELVKVIRDSVGYSVDLAGDAWMSWNLNFALKMARRL
HHHHHHEEEEECCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCEEEECHHHHHHHHHHH
EKYELSWIEEPLLPDDFESYSYLSKRTDIPISAGEHHYHVYDFKRLLDSGVRILQPDAVW
HHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHCCCEEECCCCEE
VGGITPMKRITGLAEAYGGVVIPHTSNIYNLHFIISEPESVSPMAEYLTKYKWLEDRMIN
ECCCCHHHHHHHHHHHHCCEEEECCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCC
PPKPIKGYFELGEEKGFGLKYDL
CCCCCCHHHHCCCCCCCCEECCC
>Mature Secondary Structure
MIKGCSDKCYSMTAKIDKIYVVTTERISRQNFPYVKPTDYYREYLGSLSPFQSAFMDKVC
CCCCCCCHHHHHHEECCEEEEEEHHHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHHCCEE
FIRMDLDDNVTYSILETSESVCNFVMSNLADLVRGLPVSRINMVWDLLYRYTLPIGRSGI
EEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCH
AIHAISVINLLMYDAYAKLLGVPVYELLGGKARDKIRAYASHLHPTSKDELEKEARSYVE
HHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
EGYAAMKMRFCCGPSDPLGVDKNVELVKVIRDSVGYSVDLAGDAWMSWNLNFALKMARRL
HHHHHHEEEEECCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCEEEECHHHHHHHHHHH
EKYELSWIEEPLLPDDFESYSYLSKRTDIPISAGEHHYHVYDFKRLLDSGVRILQPDAVW
HHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHCCCEEECCCCEE
VGGITPMKRITGLAEAYGGVVIPHTSNIYNLHFIISEPESVSPMAEYLTKYKWLEDRMIN
ECCCCHHHHHHHHHHHHCCEEEECCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCC
PPKPIKGYFELGEEKGFGLKYDL
CCCCCCHHHHCCCCCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA