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The map label for this gene is dppC-1 [H]

Identifier: 15898117

GI number: 15898117

Start: 1100189

End: 1101541

Strand: Direct

Name: dppC-1 [H]

Synonym: SSO1275

Alternate gene names: 15898117

Gene position: 1100189-1101541 (Clockwise)

Preceding gene: 15898116

Following gene: 15898118

Centisome position: 36.77

GC content: 35.99

Gene sequence:

>1353_bases
TTGAGTAAAAGAAATGTAGGCTTTTCCTCTTATATTAGAGATTTTTTGTCGAGTAAAATTGGATTAGTAGGCCTTATAAT
TCTAATTATTTTACTTATATTTACTGGAATAGCCTTATCTATCCCTGCAAAAGTTTACGTTTCGTGGAATAATCCAGCAG
CCTGGAATCAATATCCGGAACACGTACCTCCAGCTTGGTTATCCATCTTTTACCCGGGAAAGTATTTCACAACAGAAGAG
CTATCACCAATAAATATGTCTTTGTATTCTCCTGCTAAAAATATATTCGTAGCGATAATCACATATCAATTTAATTGGTC
TAAGGTCTTACCGGCATACAACGTATATTTCATAACTTCGAGTAATGTTACCCCTATAGAAGAAGTAATATATTGGAGTA
AACCGGATGGTTATACCTTACAGGTAAATGTTCCAGCTGGTGTATTTAATGTGCCATTTGATCTTACAAGTATTAGAGGT
GATATTTTAAGTTATATATCTTCAATTACGGGAAAAACACCAAATATAGTTAACAGCACCGTATTGTCATCAGCTTTATT
TAACTCTCCAAAATCTAATTTTACGGTAATTGAGCAGGGGAAGTATGTAGTTAAGATAGAAATAGTATCCTCATTACCCA
TGAATATTACAAAGTCAAGGTTAATTCTATTAGGGAATTCCTATGGCTTGATGGGAACTGACTATTTCGGGAGGCCATTG
GATTTAGGAATTCTTTTAGGATTACCGAATGCGCTAGAAATAGGTGTATTAACTTCATTAGTAGCTGTACTTGTGGGAGT
TTTTGTTGGAGGCATCTCTGGTTATCTAGGTGGAAATAAGGATTCTATAATACAATGGGTTACCTTAGTATTCCTTGCAT
TACCAGCTCTCCCCTTTTTAGTTGCAGTATCGTTTGTTGCAGAACCTAACATAGTTATAGAGGCTCTATTAATAGCTTTC
TTATCCTGGCCATTTTATGCCATAATAGCTAGATCAATGGCCTTATCAATAAAGTCAAATAGTTATGTTGAAGCTGATAA
ACTACTTGGAATACCATCATATAGAGTATTCTTTACACACTTCATGCCTAGGTTAATACCAATAACAGTTGCTTACATGG
TATTAGGTGTTCCTGCAGGGATTCTTTTAGCCCAAACGTTAGCCTTTTTAGGAATAGCTCCAGCCAATATAGTAACTTGG
GGAGGGATTTTAGATGCTGCAGAAACTTATCAAGCTCAAGTTAATGGATGGTGGTGGTGGGTTGTGTTCCCTGGAGCAAT
GGTCGTTATTGTAGCAATACCTTTCGTGCTAATAGGTTTCGCAATAGAAAGAGTTACATTAGGTGAGAGATAG

Upstream 100 bases:

>100_bases
GGATAACCTACGTTTTGACAATTGTGTTGCTACTTGGATTGTTTTTAGGGGAATTAGTTTACGGATTATTAGATCCTAGG
ATAAAAGTTGGTGAGTAGGA

Downstream 100 bases:

>100_bases
GATGTTATTAGAGGTAAGAAACTTAAAGGTTTACTTCTACACAAAGAGAGGTATTGTTAAGGCTGTTGACGGAGTTAACT
TATATTTAGATAAGGGAGAA

Product: oligo/dipeptide transport, permease protein (dppC-1)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 450; Mature: 449

Protein sequence:

>450_residues
MSKRNVGFSSYIRDFLSSKIGLVGLIILIILLIFTGIALSIPAKVYVSWNNPAAWNQYPEHVPPAWLSIFYPGKYFTTEE
LSPINMSLYSPAKNIFVAIITYQFNWSKVLPAYNVYFITSSNVTPIEEVIYWSKPDGYTLQVNVPAGVFNVPFDLTSIRG
DILSYISSITGKTPNIVNSTVLSSALFNSPKSNFTVIEQGKYVVKIEIVSSLPMNITKSRLILLGNSYGLMGTDYFGRPL
DLGILLGLPNALEIGVLTSLVAVLVGVFVGGISGYLGGNKDSIIQWVTLVFLALPALPFLVAVSFVAEPNIVIEALLIAF
LSWPFYAIIARSMALSIKSNSYVEADKLLGIPSYRVFFTHFMPRLIPITVAYMVLGVPAGILLAQTLAFLGIAPANIVTW
GGILDAAETYQAQVNGWWWWVVFPGAMVVIVAIPFVLIGFAIERVTLGER

Sequences:

>Translated_450_residues
MSKRNVGFSSYIRDFLSSKIGLVGLIILIILLIFTGIALSIPAKVYVSWNNPAAWNQYPEHVPPAWLSIFYPGKYFTTEE
LSPINMSLYSPAKNIFVAIITYQFNWSKVLPAYNVYFITSSNVTPIEEVIYWSKPDGYTLQVNVPAGVFNVPFDLTSIRG
DILSYISSITGKTPNIVNSTVLSSALFNSPKSNFTVIEQGKYVVKIEIVSSLPMNITKSRLILLGNSYGLMGTDYFGRPL
DLGILLGLPNALEIGVLTSLVAVLVGVFVGGISGYLGGNKDSIIQWVTLVFLALPALPFLVAVSFVAEPNIVIEALLIAF
LSWPFYAIIARSMALSIKSNSYVEADKLLGIPSYRVFFTHFMPRLIPITVAYMVLGVPAGILLAQTLAFLGIAPANIVTW
GGILDAAETYQAQVNGWWWWVVFPGAMVVIVAIPFVLIGFAIERVTLGER
>Mature_449_residues
SKRNVGFSSYIRDFLSSKIGLVGLIILIILLIFTGIALSIPAKVYVSWNNPAAWNQYPEHVPPAWLSIFYPGKYFTTEEL
SPINMSLYSPAKNIFVAIITYQFNWSKVLPAYNVYFITSSNVTPIEEVIYWSKPDGYTLQVNVPAGVFNVPFDLTSIRGD
ILSYISSITGKTPNIVNSTVLSSALFNSPKSNFTVIEQGKYVVKIEIVSSLPMNITKSRLILLGNSYGLMGTDYFGRPLD
LGILLGLPNALEIGVLTSLVAVLVGVFVGGISGYLGGNKDSIIQWVTLVFLALPALPFLVAVSFVAEPNIVIEALLIAFL
SWPFYAIIARSMALSIKSNSYVEADKLLGIPSYRVFFTHFMPRLIPITVAYMVLGVPAGILLAQTLAFLGIAPANIVTWG
GILDAAETYQAQVNGWWWWVVFPGAMVVIVAIPFVLIGFAIERVTLGER

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=213, Percent_Identity=30.9859154929577, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1787498, Length=210, Percent_Identity=31.4285714285714, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1789964, Length=217, Percent_Identity=30.8755760368664, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787054, Length=179, Percent_Identity=26.2569832402235, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1789889, Length=219, Percent_Identity=26.4840182648402, Blast_Score=65, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 49333; Mature: 49201

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKRNVGFSSYIRDFLSSKIGLVGLIILIILLIFTGIALSIPAKVYVSWNNPAAWNQYPE
CCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEECCEEEEEEECCCCCCCCCCC
HVPPAWLSIFYPGKYFTTEELSPINMSLYSPAKNIFVAIITYQFNWSKVLPAYNVYFITS
CCCCCCEEEEECCCEECCCCCCCCCEEECCCCCCEEEEEEEEEECCCCCCCCEEEEEEEC
SNVTPIEEVIYWSKPDGYTLQVNVPAGVFNVPFDLTSIRGDILSYISSITGKTPNIVNST
CCCCCHHHHEEECCCCCEEEEEECCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHH
VLSSALFNSPKSNFTVIEQGKYVVKIEIVSSLPMNITKSRLILLGNSYGLMGTDYFGRPL
HHHHHHHCCCCCCEEEEECCCEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCC
DLGILLGLPNALEIGVLTSLVAVLVGVFVGGISGYLGGNKDSIIQWVTLVFLALPALPFL
CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
VAVSFVAEPNIVIEALLIAFLSWPFYAIIARSMALSIKSNSYVEADKLLGIPSYRVFFTH
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHCCCCCHHHHHHH
FMPRLIPITVAYMVLGVPAGILLAQTLAFLGIAPANIVTWGGILDAAETYQAQVNGWWWW
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHEEECCHHHHHHHHEEEECCEEEE
VVFPGAMVVIVAIPFVLIGFAIERVTLGER
EEHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SKRNVGFSSYIRDFLSSKIGLVGLIILIILLIFTGIALSIPAKVYVSWNNPAAWNQYPE
CCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEECCEEEEEEECCCCCCCCCCC
HVPPAWLSIFYPGKYFTTEELSPINMSLYSPAKNIFVAIITYQFNWSKVLPAYNVYFITS
CCCCCCEEEEECCCEECCCCCCCCCEEECCCCCCEEEEEEEEEECCCCCCCCEEEEEEEC
SNVTPIEEVIYWSKPDGYTLQVNVPAGVFNVPFDLTSIRGDILSYISSITGKTPNIVNST
CCCCCHHHHEEECCCCCEEEEEECCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHH
VLSSALFNSPKSNFTVIEQGKYVVKIEIVSSLPMNITKSRLILLGNSYGLMGTDYFGRPL
HHHHHHHCCCCCCEEEEECCCEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCC
DLGILLGLPNALEIGVLTSLVAVLVGVFVGGISGYLGGNKDSIIQWVTLVFLALPALPFL
CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
VAVSFVAEPNIVIEALLIAFLSWPFYAIIARSMALSIKSNSYVEADKLLGIPSYRVFFTH
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHCCCCCHHHHHHH
FMPRLIPITVAYMVLGVPAGILLAQTLAFLGIAPANIVTWGGILDAAETYQAQVNGWWWW
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHEEECCHHHHHHHHEEEECCEEEE
VVFPGAMVVIVAIPFVLIGFAIERVTLGER
EEHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]