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The map label for this gene is dppB-1 [H]

Identifier: 15898116

GI number: 15898116

Start: 1099140

End: 1100186

Strand: Direct

Name: dppB-1 [H]

Synonym: SSO1274

Alternate gene names: 15898116

Gene position: 1099140-1100186 (Clockwise)

Preceding gene: 15898115

Following gene: 15898117

Centisome position: 36.73

GC content: 35.24

Gene sequence:

>1047_bases
ATGGGTTTTACCACATATATGATAAAAAAGGTACTTATTTATTTTTCAGTTCTTCTAGCCACTTTAACCATTCTTTATAT
TTTTACTTTTCCCATATTGCAGGAGGTTATAGCTAAGAGTATCAATTTTCAAGTTGCACAGTTCTCTCAAACTTTGTTTA
AAAATGCCCATAATCTAAACTCTACTCAAATTCAGATTGCAGTAGAGAAGTATAGGGAATCTTTAATTGCGGCTTACGGG
CTTAACCAACCAATTATCGATAAATATTTTATCCAAATGTATAATTTGATGCGTTTCGATTTCGGTACAGCTTACTTTTT
ACAAGCTCCTTCTGGTTCTAGAGAGGTTAGTTCAATTATAGCTTATTATTTGCCCAACACTATTCTCTTATTTACTACTG
CTACTATAGTATTCATAGTAGCTGGGACTATAATTGGCTTACTCTCTGCAAAATCTAAATTCTGGGAGAAGGTAATCGCA
ATAATAGCTGTAATACACTCTAGTATTCCCACTTGGTGGTTAGGTTTTGTCCTAATTGCTGCTTTAGCATATGCAGTTAA
AGTTTTCCCACCTGGAGGAATGACCTCAGTTCCACCGCCAAAGAATCCATTTGATTATGGAATAAGTGTTTTATATCACA
TGGCGTTACCACTGATTACTATCTTTATTGTAAACGTTGGAGGATTTGCGTATATTGTTAGAAGTTTAGTTACCTCAATT
ATGAAAGAAGATTTTGTAATTACAGCGAAAGCTAGAGGATTACCAGCCTCTAGAATACTATATAGACATGTCTTACGCTC
AGGCTCACCATCAATTGCCACACAAGCTATTTTAGCATTAGCTGGATCATTAGGAGGTAGTTTAACCACAGAGGTTGTTT
TCGAATGGCCTGGGGTAGGTTTGTTAACTTATGTTGCCATAACCTTAAATGATTTACCAGTGATATTAGGGATAACCTAC
GTTTTGACAATTGTGTTGCTACTTGGATTGTTTTTAGGGGAATTAGTTTACGGATTATTAGATCCTAGGATAAAAGTTGG
TGAGTAG

Upstream 100 bases:

>100_bases
CGAATATTGGCTATATTGCTGTAATAGTAGTCCTAATAATTATAATAATAGCTTTAGCGGTATTATTATTCAGAAGGAGA
TAATAAAAGAGTGAGTAATA

Downstream 100 bases:

>100_bases
GATTGAGTAAAAGAAATGTAGGCTTTTCCTCTTATATTAGAGATTTTTTGTCGAGTAAAATTGGATTAGTAGGCCTTATA
ATTCTAATTATTTTACTTAT

Product: oligo/dipeptide transport, permease protein (dppB-1)

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 348; Mature: 347

Protein sequence:

>348_residues
MGFTTYMIKKVLIYFSVLLATLTILYIFTFPILQEVIAKSINFQVAQFSQTLFKNAHNLNSTQIQIAVEKYRESLIAAYG
LNQPIIDKYFIQMYNLMRFDFGTAYFLQAPSGSREVSSIIAYYLPNTILLFTTATIVFIVAGTIIGLLSAKSKFWEKVIA
IIAVIHSSIPTWWLGFVLIAALAYAVKVFPPGGMTSVPPPKNPFDYGISVLYHMALPLITIFIVNVGGFAYIVRSLVTSI
MKEDFVITAKARGLPASRILYRHVLRSGSPSIATQAILALAGSLGGSLTTEVVFEWPGVGLLTYVAITLNDLPVILGITY
VLTIVLLLGLFLGELVYGLLDPRIKVGE

Sequences:

>Translated_348_residues
MGFTTYMIKKVLIYFSVLLATLTILYIFTFPILQEVIAKSINFQVAQFSQTLFKNAHNLNSTQIQIAVEKYRESLIAAYG
LNQPIIDKYFIQMYNLMRFDFGTAYFLQAPSGSREVSSIIAYYLPNTILLFTTATIVFIVAGTIIGLLSAKSKFWEKVIA
IIAVIHSSIPTWWLGFVLIAALAYAVKVFPPGGMTSVPPPKNPFDYGISVLYHMALPLITIFIVNVGGFAYIVRSLVTSI
MKEDFVITAKARGLPASRILYRHVLRSGSPSIATQAILALAGSLGGSLTTEVVFEWPGVGLLTYVAITLNDLPVILGITY
VLTIVLLLGLFLGELVYGLLDPRIKVGE
>Mature_347_residues
GFTTYMIKKVLIYFSVLLATLTILYIFTFPILQEVIAKSINFQVAQFSQTLFKNAHNLNSTQIQIAVEKYRESLIAAYGL
NQPIIDKYFIQMYNLMRFDFGTAYFLQAPSGSREVSSIIAYYLPNTILLFTTATIVFIVAGTIIGLLSAKSKFWEKVIAI
IAVIHSSIPTWWLGFVLIAALAYAVKVFPPGGMTSVPPPKNPFDYGISVLYHMALPLITIFIVNVGGFAYIVRSLVTSIM
KEDFVITAKARGLPASRILYRHVLRSGSPSIATQAILALAGSLGGSLTTEVVFEWPGVGLLTYVAITLNDLPVILGITYV
LTIVLLLGLFLGELVYGLLDPRIKVGE

Specific function: This protein is a component of an oligopeptide permease, a binding protein-dependent transport system. This APP system can completely substitute for the OPP system in both sporulation and genetic competence, though, unlike OPP, is incapable of transportin

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788504, Length=331, Percent_Identity=28.3987915407855, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1789888, Length=271, Percent_Identity=26.5682656826568, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1789965, Length=300, Percent_Identity=26.6666666666667, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI1787761, Length=298, Percent_Identity=28.5234899328859, Blast_Score=96, Evalue=5e-21,
Organism=Escherichia coli, GI1787053, Length=280, Percent_Identity=24.6428571428571, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1787497, Length=272, Percent_Identity=25, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI1787550, Length=233, Percent_Identity=27.0386266094421, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 38327; Mature: 38196

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
GFTTYMIKKVLIYFSVLLATLTILYIFTFPILQEVIAKSINFQVAQFSQTLFKNAHNLN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCC
STQIQIAVEKYRESLIAAYGLNQPIIDKYFIQMYNLMRFDFGTAYFLQAPSGSREVSSII
CHHEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH
AYYLPNTILLFTTATIVFIVAGTIIGLLSAKSKFWEKVIAIIAVIHSSIPTWWLGFVLIA
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
ALAYAVKVFPPGGMTSVPPPKNPFDYGISVLYHMALPLITIFIVNVGGFAYIVRSLVTSI
HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
MKEDFVITAKARGLPASRILYRHVLRSGSPSIATQAILALAGSLGGSLTTEVVFEWPGVG
HHCCEEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHEECCCHH
LLTYVAITLNDLPVILGITYVLTIVLLLGLFLGELVYGLLDPRIKVGE
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7997159; 9384377 [H]