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The map label for this gene is lrs14 [H]

Identifier: 15897963

GI number: 15897963

Start: 954091

End: 954474

Strand: Reverse

Name: lrs14 [H]

Synonym: SSO1101

Alternate gene names: 15897963

Gene position: 954474-954091 (Counterclockwise)

Preceding gene: 15897966

Following gene: 15897959

Centisome position: 31.9

GC content: 36.72

Gene sequence:

>384_bases
ATGGCTGAAAAAGTAAGGTTCCCTGATGGAAGGGAAGTAGATATACACGATTTCATAGCATTCATGTACGGTCTATCTAA
AAGCGATGTAGAAGTATTACACATACTACTACAAAATGGAAAGATGACTACTGATGATCTCTCCCAGAAATTAAATGTAA
CTAAAGCGTCTATAAGCAAGGCACTAAATAACTTACTTGACAAGGGCTTAATACAGAGGGAAAAGGCTCCAGCTGAAAAA
GAGGAAAGAAAAGGAAGACCAAACTACATATACTGGGTAGAAAAAGAGAGATTATATAGGAAATTGGAGGCAGATCTAGA
AAAACTTGCAGGAACTGTTAAAGAGGCATTACAGAAGCACACCGCATTAGAAATAGTCATTTAA

Upstream 100 bases:

>100_bases
TATTTGAAATATATTTGTATACTTTTATACACAAATGTATATTTAGATATACACGACTTTTTTAAGTAAGTAAGCTAAAT
AGATATATGGTGAAAAACAA

Downstream 100 bases:

>100_bases
ACCTTTTTCAGCAAAACTATATCATATGGCTGAATTCAAGTCTATAAGACAAATTTTATCTATTCCTAATTTTGGTACTT
GTACTCAGTGTGGGAAAGAG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 127; Mature: 126

Protein sequence:

>127_residues
MAEKVRFPDGREVDIHDFIAFMYGLSKSDVEVLHILLQNGKMTTDDLSQKLNVTKASISKALNNLLDKGLIQREKAPAEK
EERKGRPNYIYWVEKERLYRKLEADLEKLAGTVKEALQKHTALEIVI

Sequences:

>Translated_127_residues
MAEKVRFPDGREVDIHDFIAFMYGLSKSDVEVLHILLQNGKMTTDDLSQKLNVTKASISKALNNLLDKGLIQREKAPAEK
EERKGRPNYIYWVEKERLYRKLEADLEKLAGTVKEALQKHTALEIVI
>Mature_126_residues
AEKVRFPDGREVDIHDFIAFMYGLSKSDVEVLHILLQNGKMTTDDLSQKLNVTKASISKALNNLLDKGLIQREKAPAEKE
ERKGRPNYIYWVEKERLYRKLEADLEKLAGTVKEALQKHTALEIVI

Specific function: Acts in transcription regulation. Binds to multiple sequences in its own promoter [H]

COG id: COG3355

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002831
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01978 TrmB [H]

EC number: NA

Molecular weight: Translated: 14596; Mature: 14465

Theoretical pI: Translated: 8.84; Mature: 8.84

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEKVRFPDGREVDIHDFIAFMYGLSKSDVEVLHILLQNGKMTTDDLSQKLNVTKASISK
CCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
ALNNLLDKGLIQREKAPAEKEERKGRPNYIYWVEKERLYRKLEADLEKLAGTVKEALQKH
HHHHHHHHHHHHHHCCCCCHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
TALEIVI
HHHHCCC
>Mature Secondary Structure 
AEKVRFPDGREVDIHDFIAFMYGLSKSDVEVLHILLQNGKMTTDDLSQKLNVTKASISK
CCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
ALNNLLDKGLIQREKAPAEKEERKGRPNYIYWVEKERLYRKLEADLEKLAGTVKEALQKH
HHHHHHHHHHHHHHCCCCCHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
TALEIVI
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10049378; 11427726 [H]