Click here to switch to the map view.

The map label for this gene is ypsC [H]

Identifier: 15927025

GI number: 15927025

Start: 1482433

End: 1483578

Strand: Reverse

Name: ypsC [H]

Synonym: SA1277

Alternate gene names: 15927025

Gene position: 1483578-1482433 (Counterclockwise)

Preceding gene: 15927026

Following gene: 15927024

Centisome position: 52.71

GC content: 35.69

Gene sequence:

>1146_bases
ATGTTTCAATTACTTGCAGTTTGTCCGATGGGATTAGAAGCTGTTGTTGCTAGGGAAATTCAAGAATTAGGCTATGAAAC
AAATGTTGAAAATGGTCGTATATTTTTTGAAGGAGACGCAAGTGCAATTGTAAAGGCAAATTTATGGTTGCGCACAGCAG
ACCGAATCAAAATTGTTGTTGGACGTTTTAACGCAACAACGTTTGACGAATTATTCGAACAAACCAAAGCGCTCCCTTGG
GAATCTATAATTGATAAAGAAGGTAACTTCCCAGTTCAAGGTAGAAGCGTTAAATCAACACTACATAGTGTGCCAGATTG
TCAGGCGATAACTAAGAAAGCTATTGTTGAACGATTACGTCGCGCATATAACGAAAAAGGTTGGTTAAATGAATCAGGTG
CCAAATACCCTGTTGAAGTTGCTATTTTAAAAGATAATGTATTATTGACTATCGACACATCAGGTTCTGGTTTGAACAGA
CGTGGTTATAGATTAGCACAAGGTGAAGCACCAATTAAAGAAACGTTGGCAGCAAGTTTAATCCGTCTTGCAAACTGGAA
AGGTGATACACCTTTAATTGATCCATTTTGCGGTTCGGGTACAATAGCTATAGAAGCTTGTTTAATTGCTCAAAATATCG
CACCTGGTTTTAATCGCGAGTTCGTATCAGAGCAATGGAACATCATGCCAGCAAATATTTATGATGATTACCGTGATGAA
GCGGATAAGATGGCTGATTATGATAAAGAAATCGAAGTATATGCTTCTGATATCGATCCAGAAATGGTAGAGATTGCTAA
GCGTAACGCTGAAGAAGTTGGGTTGTCTGATATTATTAAATTTAGTGTAAAAGATGTCAATACATTAACAATTGATACAG
AAGAACCGGTGGCGTTAATTGGAAATCCTCCATATGGTGAACGTATTGGTGATCGTGAAGAAGTTGAAGAAATGTACCGT
TATATTGGTAAACTAATGAAACAACATCCATTTTTATCTACATACATTTTAACAAGTAATAAAGAATTTGAATATTTAGT
AAATCGTAAAGCAACGAAGCGACGTAAGTTATTTAATGGATATATAGAATGTACTTATTATCAATACTGGGGTAAAAAGA
CAGAACGTAAAACTATTGAAAACTAA

Upstream 100 bases:

>100_bases
TAGTAAGCGGATGCGTTAATGTATCAGCGATTAAATTTGTTGGAAATGTATAAAAAACACAAGCTAAGAATAAAATACCT
GTATAAAAGGAGAATCATAT

Downstream 100 bases:

>100_bases
AGTGTTTCTAATGCGTGACTAAAATTAGTAATAATTAAGTTCTCATGATAATAGGTATTTTTGAAAAATGGAGGAGTCTA
TAAATGGGTAAAAAAATGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 381; Mature: 381

Protein sequence:

>381_residues
MFQLLAVCPMGLEAVVAREIQELGYETNVENGRIFFEGDASAIVKANLWLRTADRIKIVVGRFNATTFDELFEQTKALPW
ESIIDKEGNFPVQGRSVKSTLHSVPDCQAITKKAIVERLRRAYNEKGWLNESGAKYPVEVAILKDNVLLTIDTSGSGLNR
RGYRLAQGEAPIKETLAASLIRLANWKGDTPLIDPFCGSGTIAIEACLIAQNIAPGFNREFVSEQWNIMPANIYDDYRDE
ADKMADYDKEIEVYASDIDPEMVEIAKRNAEEVGLSDIIKFSVKDVNTLTIDTEEPVALIGNPPYGERIGDREEVEEMYR
YIGKLMKQHPFLSTYILTSNKEFEYLVNRKATKRRKLFNGYIECTYYQYWGKKTERKTIEN

Sequences:

>Translated_381_residues
MFQLLAVCPMGLEAVVAREIQELGYETNVENGRIFFEGDASAIVKANLWLRTADRIKIVVGRFNATTFDELFEQTKALPW
ESIIDKEGNFPVQGRSVKSTLHSVPDCQAITKKAIVERLRRAYNEKGWLNESGAKYPVEVAILKDNVLLTIDTSGSGLNR
RGYRLAQGEAPIKETLAASLIRLANWKGDTPLIDPFCGSGTIAIEACLIAQNIAPGFNREFVSEQWNIMPANIYDDYRDE
ADKMADYDKEIEVYASDIDPEMVEIAKRNAEEVGLSDIIKFSVKDVNTLTIDTEEPVALIGNPPYGERIGDREEVEEMYR
YIGKLMKQHPFLSTYILTSNKEFEYLVNRKATKRRKLFNGYIECTYYQYWGKKTERKTIEN
>Mature_381_residues
MFQLLAVCPMGLEAVVAREIQELGYETNVENGRIFFEGDASAIVKANLWLRTADRIKIVVGRFNATTFDELFEQTKALPW
ESIIDKEGNFPVQGRSVKSTLHSVPDCQAITKKAIVERLRRAYNEKGWLNESGAKYPVEVAILKDNVLLTIDTSGSGLNR
RGYRLAQGEAPIKETLAASLIRLANWKGDTPLIDPFCGSGTIAIEACLIAQNIAPGFNREFVSEQWNIMPANIYDDYRDE
ADKMADYDKEIEVYASDIDPEMVEIAKRNAEEVGLSDIIKFSVKDVNTLTIDTEEPVALIGNPPYGERIGDREEVEEMYR
YIGKLMKQHPFLSTYILTSNKEFEYLVNRKATKRRKLFNGYIECTYYQYWGKKTERKTIEN

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

Organism=Escherichia coli, GI1787181, Length=353, Percent_Identity=29.4617563739377, Blast_Score=168, Evalue=5e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 43333; Mature: 43333

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: PS51165 THUMP ; PS00092 N6_MTASE ; PS01261 UPF0020

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFQLLAVCPMGLEAVVAREIQELGYETNVENGRIFFEGDASAIVKANLWLRTADRIKIVV
CCCEEECCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCEEEEEEEEEEECCEEEEEE
GRFNATTFDELFEQTKALPWESIIDKEGNFPVQGRSVKSTLHSVPDCQAITKKAIVERLR
EECCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHH
RAYNEKGWLNESGAKYPVEVAILKDNVLLTIDTSGSGLNRRGYRLAQGEAPIKETLAASL
HHHCCCCCCCCCCCCCCEEEEEEECCEEEEEECCCCCCCCCCCEECCCCCCHHHHHHHHH
IRLANWKGDTPLIDPFCGSGTIAIEACLIAQNIAPGFNREFVSEQWNIMPANIYDDYRDE
HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHCCCEEECHHHHHHHHH
ADKMADYDKEIEVYASDIDPEMVEIAKRNAEEVGLSDIIKFSVKDVNTLTIDTEEPVALI
HHHHHCCCCCEEEEECCCCHHHHHHHHCCHHHCCHHHHHHHHCCCCEEEEECCCCCEEEE
GNPPYGERIGDREEVEEMYRYIGKLMKQHPFLSTYILTSNKEFEYLVNRKATKRRKLFNG
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHCCHHHHHHHHHCC
YIECTYYQYWGKKTERKTIEN
EEEEEEEHHHCCCCCHHCCCC
>Mature Secondary Structure
MFQLLAVCPMGLEAVVAREIQELGYETNVENGRIFFEGDASAIVKANLWLRTADRIKIVV
CCCEEECCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCEEEEEEEEEEECCEEEEEE
GRFNATTFDELFEQTKALPWESIIDKEGNFPVQGRSVKSTLHSVPDCQAITKKAIVERLR
EECCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHH
RAYNEKGWLNESGAKYPVEVAILKDNVLLTIDTSGSGLNRRGYRLAQGEAPIKETLAASL
HHHCCCCCCCCCCCCCCEEEEEEECCEEEEEECCCCCCCCCCCEECCCCCCHHHHHHHHH
IRLANWKGDTPLIDPFCGSGTIAIEACLIAQNIAPGFNREFVSEQWNIMPANIYDDYRDE
HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHCCCEEECHHHHHHHHH
ADKMADYDKEIEVYASDIDPEMVEIAKRNAEEVGLSDIIKFSVKDVNTLTIDTEEPVALI
HHHHHCCCCCEEEEECCCCHHHHHHHHCCHHHCCHHHHHHHHCCCCEEEEECCCCCEEEE
GNPPYGERIGDREEVEEMYRYIGKLMKQHPFLSTYILTSNKEFEYLVNRKATKRRKLFNG
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHCCHHHHHHHHHCC
YIECTYYQYWGKKTERKTIEN
EEEEEEEHHHCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377; 2423526 [H]