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The map label for this gene is opp-2B

Identifier: 15926962

GI number: 15926962

Start: 1386698

End: 1387684

Strand: Reverse

Name: opp-2B

Synonym: SA1214

Alternate gene names: 15926962

Gene position: 1387684-1386698 (Counterclockwise)

Preceding gene: 15926963

Following gene: 15926961

Centisome position: 49.3

GC content: 31.31

Gene sequence:

>987_bases
ATGTTCATAATAAAGTCTATGTTGTATAGACTGATGCAAATGATAGTTGTTTTATTTGTTATTTCTACACTTACATTCAT
TTTAATGAAATTATCACCAGGCAATCCTGTTGATAAAATATTACATCTTGATGTAGCACAAGTGTCGACGGAACAAATAA
ATGCAACCAAAGATAAATTGGGATTAAATGATTCTTTATTGGTACAGTGGTGGCATTGGATGAATCATTTATTACATTTT
AATTTAGGAAAAAGTTTTGAATCAAAAGAACCGGTAACACAGATATTATTCAACTATGCACCCATAACATTACTCATATC
ATTTTCAACATTAGTAGTGTCGTTATGCATATCTATACCGCTCGGCATTATAGCAGCCAAACGATTTCATAAGTGGACGG
ATAAAGTGATTAGAGTGATCTCAACACTATCGATTAGTTTACCAGCGTTCTTTATCGGTATTATTTTATTATTTATTGTC
ACAAATTTAATGAATATAGATAGCGTTATACTAAGTCAGTTTATATTACCTGTAATCACGCTATCTTTAGGTATGTGTGC
ATACATCATTCGTTTAGTGCGTTCTAATTTATTGATGTTATTGCAAAGTAATATCGTACAAGCATCAAGATTACGCGGTA
TGAATGAACGTTATATTTTAATTCATGATTTACTAAAACCAACAATTTTGCCGATTATCCCATTACTAGGGATTTCACTT
GGCAGTCTAATAGGTGGTACTGTAGTGATTGAAAATTTATTTGATATACCTGGTATTGGTTATCTATTAATGGATAGTAT
TAAATCTCGAGATTATCCTGTTATTCAAGGATGCGTGTTATTTATTGGCTTCTTCGTTGTTATTATCAATACGATTGCTG
ATTTATTAACGTTATTACTTGATCCGAAGCAGCGTTTACAATTAGGAAATCCAAAAAACAAAACCAATACACCATTGATA
TCAGAAAGTAGTGACCGTCATGCATAA

Upstream 100 bases:

>100_bases
CTATAATGAACGTTGGTTCTTAATATGTAAGTTGCATATACATGCGCCATTCTCATGTAAAAAGAAAGTGTTAGTAACTT
ACACAAGGAGGGGGACTATT

Downstream 100 bases:

>100_bases
AATATTTTCAAAGAATAACCTGATATTTTTTGTATTCGTTGCATTTATTTTTGTGGTAATTGTACTGCAATTCTTTGTCA
GTAGTGAAAATGCAACCAAA

Product: oligopeptide transporter permease

Products: Ni2; [Cytoplasm]; ADP; phosphate [C]

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MFIIKSMLYRLMQMIVVLFVISTLTFILMKLSPGNPVDKILHLDVAQVSTEQINATKDKLGLNDSLLVQWWHWMNHLLHF
NLGKSFESKEPVTQILFNYAPITLLISFSTLVVSLCISIPLGIIAAKRFHKWTDKVIRVISTLSISLPAFFIGIILLFIV
TNLMNIDSVILSQFILPVITLSLGMCAYIIRLVRSNLLMLLQSNIVQASRLRGMNERYILIHDLLKPTILPIIPLLGISL
GSLIGGTVVIENLFDIPGIGYLLMDSIKSRDYPVIQGCVLFIGFFVVIINTIADLLTLLLDPKQRLQLGNPKNKTNTPLI
SESSDRHA

Sequences:

>Translated_328_residues
MFIIKSMLYRLMQMIVVLFVISTLTFILMKLSPGNPVDKILHLDVAQVSTEQINATKDKLGLNDSLLVQWWHWMNHLLHF
NLGKSFESKEPVTQILFNYAPITLLISFSTLVVSLCISIPLGIIAAKRFHKWTDKVIRVISTLSISLPAFFIGIILLFIV
TNLMNIDSVILSQFILPVITLSLGMCAYIIRLVRSNLLMLLQSNIVQASRLRGMNERYILIHDLLKPTILPIIPLLGISL
GSLIGGTVVIENLFDIPGIGYLLMDSIKSRDYPVIQGCVLFIGFFVVIINTIADLLTLLLDPKQRLQLGNPKNKTNTPLI
SESSDRHA
>Mature_328_residues
MFIIKSMLYRLMQMIVVLFVISTLTFILMKLSPGNPVDKILHLDVAQVSTEQINATKDKLGLNDSLLVQWWHWMNHLLHF
NLGKSFESKEPVTQILFNYAPITLLISFSTLVVSLCISIPLGIIAAKRFHKWTDKVIRVISTLSISLPAFFIGIILLFIV
TNLMNIDSVILSQFILPVITLSLGMCAYIIRLVRSNLLMLLQSNIVQASRLRGMNERYILIHDLLKPTILPIIPLLGISL
GSLIGGTVVIENLFDIPGIGYLLMDSIKSRDYPVIQGCVLFIGFFVVIINTIADLLTLLLDPKQRLQLGNPKNKTNTPLI
SESSDRHA

Specific function: Part of a transport system that may be involved in oligopeptide uptake. Probably responsible for the translocation of the substrate across the membrane. Important for S.aureus growth and survival during the infection process [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789888, Length=311, Percent_Identity=32.475884244373, Blast_Score=174, Evalue=1e-44,
Organism=Escherichia coli, GI1787053, Length=303, Percent_Identity=29.3729372937294, Blast_Score=170, Evalue=1e-43,
Organism=Escherichia coli, GI1787497, Length=311, Percent_Identity=27.3311897106109, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=26.3313609467456, Blast_Score=141, Evalue=6e-35,
Organism=Escherichia coli, GI1787761, Length=327, Percent_Identity=30.2752293577982, Blast_Score=131, Evalue=6e-32,
Organism=Escherichia coli, GI1787550, Length=273, Percent_Identity=28.9377289377289, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1788504, Length=361, Percent_Identity=24.0997229916898, Blast_Score=84, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36816; Mature: 36816

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCHHHHCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure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CCHHHHCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Ni2; [Periplasm]; ATP; H2O [C]

Specific reaction: Ni2+ [Periplasm] + ATP + H2O = Ni2+ [Cytoplasm] + ADP + phosphate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA