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The map label for this gene is ylmE [H]

Identifier: 15926771

GI number: 15926771

Start: 1168023

End: 1168697

Strand: Direct

Name: ylmE [H]

Synonym: SA1031

Alternate gene names: 15926771

Gene position: 1168023-1168697 (Clockwise)

Preceding gene: 15926770

Following gene: 15926772

Centisome position: 41.5

GC content: 33.04

Gene sequence:

>675_bases
TTGCGTGTGAAAGATAATTTACAACAAATCTCAACACAAATTAATGACAAAAGTGAAAAAAATAATTTTTCAACAAAACC
AAACGTGATTGCAGTTACAAAATATGTTACAATAGAGCGAGCTAAAGAAGCGTATGAGGCTGGAATAAGACATTTTGGTG
AGAATAGATTGGAAGGCTTTTTTCAAAAGAAAGAAGCATTACCATCAGATGCGGTGATTCATTTTATAGGATCATTACAA
TCTCGAAAAGTTAAGGACGTTATAAACGACGTAGATTATTTCCATGCTTTAGATCGATTGAGCTTAGCCAAAGAAATTAA
CAAACGTGCAGAACATAAAATTAAATGTTTCTTGCAAGTGAACGTTTCGGGAGAAGCTTCTAAACATGGTATTGCTTTAG
AAGATGTTGATCAGTTTATAGATGATCTTAAAAAATATGACAAAATCGAAATTGTAGGTTTAATGACGATGGCACCATTG
ACAGATGATGAAGCATATATTAGATCGTTATTTAAACAGTTACGTTTGAAAAAAGAAGAAATACAACGACTCAATTTAGA
ATATGCGCCTTGTGATGAATTATCAATGGGAATGAGTAATGACTATCTTATTGCAGTTGAAGAAGGTGCGACGTTTGTTA
GAATTGGGACTAAACTTGTAGGAGAAGAGGAGTGA

Upstream 100 bases:

>100_bases
CTGAACATTTAGAATTATTTTTCTCTTATCGATTAGAAAAAGGTCAAACAGGACGCATGTTAGCATTCATTGGTCAACAG
TAAACAAGGAGGAGATATGT

Downstream 100 bases:

>100_bases
GCCACTTGGCTTTAAAAGATTTATTTAGTGGATTTTTTGTAATAGATGATGAAGAGGAAGTAGAAGTACCTGACAAACAA
CAACAGGTCAATGAAGCGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MRVKDNLQQISTQINDKSEKNNFSTKPNVIAVTKYVTIERAKEAYEAGIRHFGENRLEGFFQKKEALPSDAVIHFIGSLQ
SRKVKDVINDVDYFHALDRLSLAKEINKRAEHKIKCFLQVNVSGEASKHGIALEDVDQFIDDLKKYDKIEIVGLMTMAPL
TDDEAYIRSLFKQLRLKKEEIQRLNLEYAPCDELSMGMSNDYLIAVEEGATFVRIGTKLVGEEE

Sequences:

>Translated_224_residues
MRVKDNLQQISTQINDKSEKNNFSTKPNVIAVTKYVTIERAKEAYEAGIRHFGENRLEGFFQKKEALPSDAVIHFIGSLQ
SRKVKDVINDVDYFHALDRLSLAKEINKRAEHKIKCFLQVNVSGEASKHGIALEDVDQFIDDLKKYDKIEIVGLMTMAPL
TDDEAYIRSLFKQLRLKKEEIQRLNLEYAPCDELSMGMSNDYLIAVEEGATFVRIGTKLVGEEE
>Mature_224_residues
MRVKDNLQQISTQINDKSEKNNFSTKPNVIAVTKYVTIERAKEAYEAGIRHFGENRLEGFFQKKEALPSDAVIHFIGSLQ
SRKVKDVINDVDYFHALDRLSLAKEINKRAEHKIKCFLQVNVSGEASKHGIALEDVDQFIDDLKKYDKIEIVGLMTMAPL
TDDEAYIRSLFKQLRLKKEEIQRLNLEYAPCDELSMGMSNDYLIAVEEGATFVRIGTKLVGEEE

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=218, Percent_Identity=33.4862385321101, Blast_Score=102, Evalue=4e-22,
Organism=Escherichia coli, GI1789321, Length=227, Percent_Identity=32.5991189427313, Blast_Score=104, Evalue=5e-24,
Organism=Caenorhabditis elegans, GI17533025, Length=238, Percent_Identity=29.4117647058824, Blast_Score=89, Evalue=2e-18,
Organism=Saccharomyces cerevisiae, GI6319435, Length=193, Percent_Identity=33.160621761658, Blast_Score=90, Evalue=3e-19,
Organism=Drosophila melanogaster, GI45550861, Length=240, Percent_Identity=29.5833333333333, Blast_Score=82, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25603; Mature: 25603

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVKDNLQQISTQINDKSEKNNFSTKPNVIAVTKYVTIERAKEAYEAGIRHFGENRLEGF
CCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCHHHHHHH
FQKKEALPSDAVIHFIGSLQSRKVKDVINDVDYFHALDRLSLAKEINKRAEHKIKCFLQV
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
NVSGEASKHGIALEDVDQFIDDLKKYDKIEIVGLMTMAPLTDDEAYIRSLFKQLRLKKEE
ECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCHHH
IQRLNLEYAPCDELSMGMSNDYLIAVEEGATFVRIGTKLVGEEE
HHHHCCCCCCCCHHHCCCCCCEEEEEECCCEEEEECHHHCCCCC
>Mature Secondary Structure
MRVKDNLQQISTQINDKSEKNNFSTKPNVIAVTKYVTIERAKEAYEAGIRHFGENRLEGF
CCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCHHHHHHH
FQKKEALPSDAVIHFIGSLQSRKVKDVINDVDYFHALDRLSLAKEINKRAEHKIKCFLQV
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
NVSGEASKHGIALEDVDQFIDDLKKYDKIEIVGLMTMAPLTDDEAYIRSLFKQLRLKKEE
ECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCHHH
IQRLNLEYAPCDELSMGMSNDYLIAVEEGATFVRIGTKLVGEEE
HHHHCCCCCCCCHHHCCCCCCEEEEEECCCEEEEECHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]