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The map label for this gene is rnhC

Identifier: 15926724

GI number: 15926724

Start: 1118205

End: 1119143

Strand: Reverse

Name: rnhC

Synonym: SA0987

Alternate gene names: 15926724

Gene position: 1119143-1118205 (Counterclockwise)

Preceding gene: 15926739

Following gene: 15926714

Centisome position: 39.76

GC content: 32.91

Gene sequence:

>939_bases
ATGGCGAATATCGTTTTTAAATTGTCGGATAAAGACATAACGACATTAATGTCACGCATTACTTTTGATACTGAGAATTT
ACCTCAAGGTATGAAAGCACGTGCAAAGTATCAAAATACAACTGTAAATATTTACCAATCAGGTAAAGTCATGTTTCAAG
GTAATCATGCAGAAGCTGTGTCTAAAGAACTTCTACCGCAGCATTCTCAATTGAATACTAATAAAACTAAAAAGAAAAAT
ATGGCTAATTCTTCTCTTGAACAAACTTTAATGTATGATCAATTTAACTGTATTGGTAGTGATGAGGCTGGAAGTGGCGA
TTACTTTGGTCCTTTGACTGTGTGTGCTGCTTTTGTTACCAAAGAGCATGTTCCTATTTTAAAAACTTTGGGTGTAGATG
ATTCAAAAAAATTAACCGATACCAAAATTGTAGAACTTGCTGAGCAATTGGTTGCTTTCATCCCACATTCACTATTAACA
CTACACAATGATAAATATAATATTCAGCAAGCAAAAGGCTGGACTCAAGTAAAAATGAAAGCTGTTCTTCATAATGAAGC
CATCAAAAATGTACTTGAAAAAATTGATTCGTCTCAATTAGACTATATCGTCATTGATCAGTTCGCAAAACGCGAAGTGT
ATAGCCATTACGCATTATCCGATATACCACTTCCAAAGAAAACAAAATTTGAAACAAAAGGAGAATCGAAGTCATTAGCC
ATTGCAGTGGCAAGCATAATTTCTAGATACGCATTTATTACATATATGGATCAAATATCAAAATATATTAATATGACGAT
TCCTAAAGGTGCCGGTGCTAAAGTCGATGTAATTGCCGCAAAAATTATAAAAAAATACGGTCTTTCACGTTTAGATACCA
TTTCAAAAAAGCATTTTAAAAATCGTGAAAAAGCCCAAAAAATTTTAAAGCCTCTTTGA

Upstream 100 bases:

>100_bases
AATTCTTTACAACATACATAAATGTTTCTGACGTTATTATCATTTATGATATGATTATTTTTGCTAATGATAATGAAATT
ATATGAAAGGATTTACACAA

Downstream 100 bases:

>100_bases
TTTTTAATCATTAGAGGCTTTTATGCAGTTGTGCGAAGCATCATCTGTATTCCGCTGTTCCTCTTTGATTTATAAAATGA
ATTGGATCCTAATAGGTGAT

Product: ribonuclease HIII

Products: NA

Alternate protein names: RNase HIII

Number of amino acids: Translated: 312; Mature: 311

Protein sequence:

>312_residues
MANIVFKLSDKDITTLMSRITFDTENLPQGMKARAKYQNTTVNIYQSGKVMFQGNHAEAVSKELLPQHSQLNTNKTKKKN
MANSSLEQTLMYDQFNCIGSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELAEQLVAFIPHSLLT
LHNDKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLA
IAVASIISRYAFITYMDQISKYINMTIPKGAGAKVDVIAAKIIKKYGLSRLDTISKKHFKNREKAQKILKPL

Sequences:

>Translated_312_residues
MANIVFKLSDKDITTLMSRITFDTENLPQGMKARAKYQNTTVNIYQSGKVMFQGNHAEAVSKELLPQHSQLNTNKTKKKN
MANSSLEQTLMYDQFNCIGSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELAEQLVAFIPHSLLT
LHNDKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLA
IAVASIISRYAFITYMDQISKYINMTIPKGAGAKVDVIAAKIIKKYGLSRLDTISKKHFKNREKAQKILKPL
>Mature_311_residues
ANIVFKLSDKDITTLMSRITFDTENLPQGMKARAKYQNTTVNIYQSGKVMFQGNHAEAVSKELLPQHSQLNTNKTKKKNM
ANSSLEQTLMYDQFNCIGSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELAEQLVAFIPHSLLTL
HNDKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAI
AVASIISRYAFITYMDQISKYINMTIPKGAGAKVDVIAAKIIKKYGLSRLDTISKKHFKNREKAQKILKPL

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids

COG id: COG1039

COG function: function code L; Ribonuclease HIII

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family. RnhC subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNH3_STAA1 (A7X163)

Other databases:

- EMBL:   AP009324
- RefSeq:   YP_001441721.1
- ProteinModelPortal:   A7X163
- SMR:   A7X163
- STRING:   A7X163
- EnsemblBacteria:   EBSTAT00000003955
- GeneID:   5559397
- GenomeReviews:   AP009324_GR
- KEGG:   saw:SAHV_1131
- eggNOG:   COG1039
- GeneTree:   EBGT00050000024986
- HOGENOM:   HBG288559
- OMA:   ASIIARY
- ProtClustDB:   PRK00996
- BioCyc:   SAUR418127:SAHV_1131-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00053
- InterPro:   IPR001352
- InterPro:   IPR004641
- InterPro:   IPR012337
- PIRSF:   PIRSF037748
- TIGRFAMs:   TIGR00716

Pfam domain/function: PF01351 RNase_HII; SSF53098 RNaseH_fold

EC number: =3.1.26.4

Molecular weight: Translated: 35055; Mature: 34924

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANIVFKLSDKDITTLMSRITFDTENLPQGMKARAKYQNTTVNIYQSGKVMFQGNHAEAV
CCCEEEEECCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCEEEEEECCEEEEECCCHHHH
SKELLPQHSQLNTNKTKKKNMANSSLEQTLMYDQFNCIGSDEAGSGDYFGPLTVCAAFVT
HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
KEHVPILKTLGVDDSKKLTDTKIVELAEQLVAFIPHSLLTLHNDKYNIQQAKGWTQVKMK
HCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCHHHHCCHHHHHHH
AVLHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLA
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH
IAVASIISRYAFITYMDQISKYINMTIPKGAGAKVDVIAAKIIKKYGLSRLDTISKKHFK
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHC
NREKAQKILKPL
CHHHHHHHHCCC
>Mature Secondary Structure 
ANIVFKLSDKDITTLMSRITFDTENLPQGMKARAKYQNTTVNIYQSGKVMFQGNHAEAV
CCEEEEECCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCEEEEEECCEEEEECCCHHHH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CHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA