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The map label for this gene is yrbD [H]

Identifier: 15926601

GI number: 15926601

Start: 986491

End: 987996

Strand: Direct

Name: yrbD [H]

Synonym: SA0871

Alternate gene names: 15926601

Gene position: 986491-987996 (Clockwise)

Preceding gene: 15926599

Following gene: 15926602

Centisome position: 35.05

GC content: 35.99

Gene sequence:

>1506_bases
TTGCTAATTACTGGTGTGCTATTTACATTGCGTATGCGATTTTTTCAAGTTAGACATTTTAAAGAAATGATTCGATTAAT
GTTTCAAGGAGAGAAGTCTCCTAATGGTATTTCAAGTTTTCAAGCGATAGCCATGTCTTTAGCAGGCAGGGTTGGTACAG
GTAATATTGTCGGTGTATCTACTGCAATATTTATAGGAGGACCTGGTGCAGTATTTTGGATGTGGATTACTGCGTTTTTA
GGTGCAAGTAGTGCTTTTATTGAATCTACACTTGGTCAAATATTCAAGAGAGTTGAAAATAATGAATACCGTGGTGGACC
AGCGTATTATATTGAATATGGTATTGGTGGTAAATTTGGTAAAATTTACGGAATTATCTTTGCTATTGTTACGATTATCT
CAGTAGGTCTATTGCTTCCTGGTGTGCAATCTAACGCTATAGCAAGTTCTATGCATAATGCGATTCATGTTCCACAATGG
TTAATGGGTGCTATTGTTGTAGTTATTTTGGGATTAATTATTTTTGGTGGTGTACGTAGTATTGCCAATGTTGCAACAGC
CGTTGTACCATTTATGGCAATTATTTACATACTGATGGCTGTCATTATCATTTGTATCAATATACAAGAAGTGCCAGCGT
TATTTGCATTAATTTTCAAATCAGCATTTGGATTACAATCTGCTTTTGGTGGTATCGTTGGCGCAATGATAGAGATTGGT
GTTAAACGTGGATTATACTCAAATGAGGCTGGTCAAGGTACAGGTCCACACGCAGCAGCGGCAGCAGAAGTATCACATCC
AAGTAAACAAGGTCTAGTACAAGCATTTTCAGTTTATATTGATACATTATTTGTATGTACTGCAACTGCTCTGATTATAC
TTATTTCTGGTACATATAATGTGACTGATGGTACGGTTAATGCGAATGGCACACCGCATTTAATTAAAGATGGCGGTATT
TATGTTGAAAATGCAACAGGTAAAGATTATTCAGGTACTGCGATGTATGCACAAGCCGGCATTGATAAAGCGTTCCATGG
CAGTGGTTATCAATTTGATCCTACTTTCTCTGGCGTAGGTTCGTACTTTATTGCATTTGCTTTATTCTTCTTTGCATTTA
CTACAATTTTGTCGTACTACTACATTACAGAAACAAATGTTGCTTATTTAACGCGTAATCAAAATAATCAAGTTTCATCG
ATATTTATTAATATTGCTCGTGTGATTATTTTGTTCGCTACATTTTACGGTGCAGTTAAAACAGCTGATGTAGCATGGGC
ATTCGGTGATTTAGGTGTAGGTCTAATGGCTTGGTTAAATATCATTGCGATTTGGATTTTACATAAGCCTGCCGTAAATG
CTTTAAAAGATTATGAAATTCAAAAGAAACGTTTAGGAAACGGTTATAATGCAGTTTATCAACCTGATCCGAATAAATTA
CCTAATGCTGTCTTTTGGTTGAAGACATATCCAGAACGTTTAAAACAAGCACGTGCCAAAAAGTAA

Upstream 100 bases:

>100_bases
TATAATATTTTTATGTTTAAACAATAGGGGGAATCTTATGATTGAAAAATTAGTAACCTTTTTAAATGAGGTTGTTTGGA
GTAAGCCATTAGTTTATGGT

Downstream 100 bases:

>100_bases
TCTACTTTTGTTTATAGTATATGTAGTGATCATTTGATAAAAAAAGAAACAGCATTGATAATTTTAGGTGCTCAGAAATT
TGAATTTTAAAAATATAGTG

Product: hypothetical protein

Products: Na (I) [Cytoplasm]; L-alanine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 501; Mature: 501

Protein sequence:

>501_residues
MLITGVLFTLRMRFFQVRHFKEMIRLMFQGEKSPNGISSFQAIAMSLAGRVGTGNIVGVSTAIFIGGPGAVFWMWITAFL
GASSAFIESTLGQIFKRVENNEYRGGPAYYIEYGIGGKFGKIYGIIFAIVTIISVGLLLPGVQSNAIASSMHNAIHVPQW
LMGAIVVVILGLIIFGGVRSIANVATAVVPFMAIIYILMAVIIICINIQEVPALFALIFKSAFGLQSAFGGIVGAMIEIG
VKRGLYSNEAGQGTGPHAAAAAEVSHPSKQGLVQAFSVYIDTLFVCTATALIILISGTYNVTDGTVNANGTPHLIKDGGI
YVENATGKDYSGTAMYAQAGIDKAFHGSGYQFDPTFSGVGSYFIAFALFFFAFTTILSYYYITETNVAYLTRNQNNQVSS
IFINIARVIILFATFYGAVKTADVAWAFGDLGVGLMAWLNIIAIWILHKPAVNALKDYEIQKKRLGNGYNAVYQPDPNKL
PNAVFWLKTYPERLKQARAKK

Sequences:

>Translated_501_residues
MLITGVLFTLRMRFFQVRHFKEMIRLMFQGEKSPNGISSFQAIAMSLAGRVGTGNIVGVSTAIFIGGPGAVFWMWITAFL
GASSAFIESTLGQIFKRVENNEYRGGPAYYIEYGIGGKFGKIYGIIFAIVTIISVGLLLPGVQSNAIASSMHNAIHVPQW
LMGAIVVVILGLIIFGGVRSIANVATAVVPFMAIIYILMAVIIICINIQEVPALFALIFKSAFGLQSAFGGIVGAMIEIG
VKRGLYSNEAGQGTGPHAAAAAEVSHPSKQGLVQAFSVYIDTLFVCTATALIILISGTYNVTDGTVNANGTPHLIKDGGI
YVENATGKDYSGTAMYAQAGIDKAFHGSGYQFDPTFSGVGSYFIAFALFFFAFTTILSYYYITETNVAYLTRNQNNQVSS
IFINIARVIILFATFYGAVKTADVAWAFGDLGVGLMAWLNIIAIWILHKPAVNALKDYEIQKKRLGNGYNAVYQPDPNKL
PNAVFWLKTYPERLKQARAKK
>Mature_501_residues
MLITGVLFTLRMRFFQVRHFKEMIRLMFQGEKSPNGISSFQAIAMSLAGRVGTGNIVGVSTAIFIGGPGAVFWMWITAFL
GASSAFIESTLGQIFKRVENNEYRGGPAYYIEYGIGGKFGKIYGIIFAIVTIISVGLLLPGVQSNAIASSMHNAIHVPQW
LMGAIVVVILGLIIFGGVRSIANVATAVVPFMAIIYILMAVIIICINIQEVPALFALIFKSAFGLQSAFGGIVGAMIEIG
VKRGLYSNEAGQGTGPHAAAAAEVSHPSKQGLVQAFSVYIDTLFVCTATALIILISGTYNVTDGTVNANGTPHLIKDGGI
YVENATGKDYSGTAMYAQAGIDKAFHGSGYQFDPTFSGVGSYFIAFALFFFAFTTILSYYYITETNVAYLTRNQNNQVSS
IFINIARVIILFATFYGAVKTADVAWAFGDLGVGLMAWLNIIAIWILHKPAVNALKDYEIQKKRLGNGYNAVYQPDPNKL
PNAVFWLKTYPERLKQARAKK

Specific function: Unknown

COG id: COG1115

COG function: function code E; Na+/alanine symporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:alanine (SAF) symporter family [H]

Homologues:

Organism=Escherichia coli, GI1786188, Length=486, Percent_Identity=32.7160493827161, Blast_Score=238, Evalue=5e-64,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001463 [H]

Pfam domain/function: PF01235 Na_Ala_symp [H]

EC number: NA

Molecular weight: Translated: 54217; Mature: 54217

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: PS00873 NA_ALANINE_SYMP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLITGVLFTLRMRFFQVRHFKEMIRLMFQGEKSPNGISSFQAIAMSLAGRVGTGNIVGVS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEE
TAIFIGGPGAVFWMWITAFLGASSAFIESTLGQIFKRVENNEYRGGPAYYIEYGIGGKFG
EEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHH
KIYGIIFAIVTIISVGLLLPGVQSNAIASSMHNAIHVPQWLMGAIVVVILGLIIFGGVRS
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
IANVATAVVPFMAIIYILMAVIIICINIQEVPALFALIFKSAFGLQSAFGGIVGAMIEIG
HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VKRGLYSNEAGQGTGPHAAAAAEVSHPSKQGLVQAFSVYIDTLFVCTATALIILISGTYN
HHCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCC
VTDGTVNANGTPHLIKDGGIYVENATGKDYSGTAMYAQAGIDKAFHGSGYQFDPTFSGVG
CCCCEECCCCCCCEEECCCEEEECCCCCCCCCCCHHHHHCCCHHCCCCCCCCCCCHHHHH
SYFIAFALFFFAFTTILSYYYITETNVAYLTRNQNNQVSSIFINIARVIILFATFYGAVK
HHHHHHHHHHHHHHHHHHHHHEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
TADVAWAFGDLGVGLMAWLNIIAIWILHKPAVNALKDYEIQKKRLGNGYNAVYQPDPNKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
PNAVFWLKTYPERLKQARAKK
CCCEEHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLITGVLFTLRMRFFQVRHFKEMIRLMFQGEKSPNGISSFQAIAMSLAGRVGTGNIVGVS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEE
TAIFIGGPGAVFWMWITAFLGASSAFIESTLGQIFKRVENNEYRGGPAYYIEYGIGGKFG
EEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHH
KIYGIIFAIVTIISVGLLLPGVQSNAIASSMHNAIHVPQWLMGAIVVVILGLIIFGGVRS
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
IANVATAVVPFMAIIYILMAVIIICINIQEVPALFALIFKSAFGLQSAFGGIVGAMIEIG
HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VKRGLYSNEAGQGTGPHAAAAAEVSHPSKQGLVQAFSVYIDTLFVCTATALIILISGTYN
HHCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCC
VTDGTVNANGTPHLIKDGGIYVENATGKDYSGTAMYAQAGIDKAFHGSGYQFDPTFSGVG
CCCCEECCCCCCCEEECCCEEEECCCCCCCCCCCHHHHHCCCHHCCCCCCCCCCCHHHHH
SYFIAFALFFFAFTTILSYYYITETNVAYLTRNQNNQVSSIFINIARVIILFATFYGAVK
HHHHHHHHHHHHHHHHHHHHHEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
TADVAWAFGDLGVGLMAWLNIIAIWILHKPAVNALKDYEIQKKRLGNGYNAVYQPDPNKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
PNAVFWLKTYPERLKQARAKK
CCCEEHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Na (I) [Periplasm]; L-alanine [Periplasm] [C]

Specific reaction: Na (I) [Periplasm] + L-alanine [Periplasm] = Na (I) [Cytoplasm] + L-alanine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]