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The map label for this gene is yhdH [H]

Identifier: 15926136

GI number: 15926136

Start: 478150

End: 479490

Strand: Direct

Name: yhdH [H]

Synonym: SA0417

Alternate gene names: 15926136

Gene position: 478150-479490 (Clockwise)

Preceding gene: 15926135

Following gene: 15926137

Centisome position: 16.99

GC content: 34.6

Gene sequence:

>1341_bases
ATGATGAAAAGACAACAATCACAATGGAAGTCATCAACTGGATTTATTTTAGCTAGTGCGGGTTCTGCAATCGGTCTTGG
TGCCATGTGGAAATTCCCATATATGGCAGGGATTTATGGCGGCGGTGCCTTTCTAGCTATGTTCTTAATATTCACCATTT
TTGTTGGGTTGCCATTACTCATTATGGAATTCACTGTTGGGAAAATGGGACGGACATATACAACACAAATATATAGTAAA
TTAACTGGTAAAAAATGGCTCAATATCATTGGCTGGAACGGTAATTTGGCCGTGTTTATTTTATTTGGCTTCTATAGTGT
TATCGGTGGTTGGATTGTCATTTACATCGGACAAGTATTATGGCAATTAGTTATATTTCAACGCATCAATCATCTCCAAG
AAATGAATTTTGAAGCGGTAATATCAAATCCTTGGTTAACTGTTCTAGGGCAAGGTATATTCATATTCGCTACGATGATT
ATTGTCATGTTAGGTGTTGAAAAAGGATTAGAAAAGGCATCGAAAGTTATGATGCCATTGCTGTTTGTCTTTTTAATCAT
CATTGTGATTAAGTCTTTAACATTAGATGGTGCCTTAGAAGGTGTGAAATTTATTTTACAACCAAGAGTATCAGAGATTA
CTGCTGATGGCATCTTGTTTGCGCTAGGTCAATCATTCTTTACGTTATCATTAGGAACTACAGGTATGATTACTTATGCG
AGTTATGCCTCTAAAGACATGACGATTAAGTCATCAGCTATTTCTATCGTTGTTATGAATATCTTTGTATCTGTATTGGC
AGGCCTAGCTATATTTCCGGCGTTACATAGTTTTGGCTATGAACCACAAGAAGGGCCTGGATTATTATTTAAAGTACTGC
CAATGGTCTTTAGTCAAATGCATCTAGGCACATTATTCTATTTGGGATTCTTAGTGCTGTTCTTATTTGCGGCTTTAACG
TCATCTATTTCTTTATTAGAATTAAATGTTTCTAACTTCACGAAGAATGACAATACAAAACGTAAAAAAGTCGCAGTGAT
CGGTAGTATTTTAGTATTTATCATTAGTATTCCAGCAACCTTATCTTTTGGTATCTTAAAAGATGTAAGATTCGGTGCGG
GAACGATTTTTGATAATATGGATTTCATCGTTTCGAATGTATTGATGCCATTAGGCGCATTAGGTACTACGCTTGTCATA
GGACAATTATTAGATAAAAAATTATTACAACAATATTTTGGTAAAGATCGATTTAGATTATTCAATGGTTGGTATTACTT
AATTAAGTATGCGATGCCTGTCGTTATTATTTTAGTCTTTATCGTGCAATTATTTAGTTAA

Upstream 100 bases:

>100_bases
AATGAAACAATTTTGATGCAGGTGTATTGCATGTTATTTACATACATGTTAGAGTGTTACTTAAACACGTAGACGCTTTA
ACGCTTTAAAGGAGATGTGA

Downstream 100 bases:

>100_bases
TATATAGAAGCATCTGACACACAAGTATTTGTGTTGCTCAGGTGTTTTTTTGTTTGGAATTGAAAAGTTAGTACTGGTTC
TGAATTAATCGAAACTTAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 446; Mature: 446

Protein sequence:

>446_residues
MMKRQQSQWKSSTGFILASAGSAIGLGAMWKFPYMAGIYGGGAFLAMFLIFTIFVGLPLLIMEFTVGKMGRTYTTQIYSK
LTGKKWLNIIGWNGNLAVFILFGFYSVIGGWIVIYIGQVLWQLVIFQRINHLQEMNFEAVISNPWLTVLGQGIFIFATMI
IVMLGVEKGLEKASKVMMPLLFVFLIIIVIKSLTLDGALEGVKFILQPRVSEITADGILFALGQSFFTLSLGTTGMITYA
SYASKDMTIKSSAISIVVMNIFVSVLAGLAIFPALHSFGYEPQEGPGLLFKVLPMVFSQMHLGTLFYLGFLVLFLFAALT
SSISLLELNVSNFTKNDNTKRKKVAVIGSILVFIISIPATLSFGILKDVRFGAGTIFDNMDFIVSNVLMPLGALGTTLVI
GQLLDKKLLQQYFGKDRFRLFNGWYYLIKYAMPVVIILVFIVQLFS

Sequences:

>Translated_446_residues
MMKRQQSQWKSSTGFILASAGSAIGLGAMWKFPYMAGIYGGGAFLAMFLIFTIFVGLPLLIMEFTVGKMGRTYTTQIYSK
LTGKKWLNIIGWNGNLAVFILFGFYSVIGGWIVIYIGQVLWQLVIFQRINHLQEMNFEAVISNPWLTVLGQGIFIFATMI
IVMLGVEKGLEKASKVMMPLLFVFLIIIVIKSLTLDGALEGVKFILQPRVSEITADGILFALGQSFFTLSLGTTGMITYA
SYASKDMTIKSSAISIVVMNIFVSVLAGLAIFPALHSFGYEPQEGPGLLFKVLPMVFSQMHLGTLFYLGFLVLFLFAALT
SSISLLELNVSNFTKNDNTKRKKVAVIGSILVFIISIPATLSFGILKDVRFGAGTIFDNMDFIVSNVLMPLGALGTTLVI
GQLLDKKLLQQYFGKDRFRLFNGWYYLIKYAMPVVIILVFIVQLFS
>Mature_446_residues
MMKRQQSQWKSSTGFILASAGSAIGLGAMWKFPYMAGIYGGGAFLAMFLIFTIFVGLPLLIMEFTVGKMGRTYTTQIYSK
LTGKKWLNIIGWNGNLAVFILFGFYSVIGGWIVIYIGQVLWQLVIFQRINHLQEMNFEAVISNPWLTVLGQGIFIFATMI
IVMLGVEKGLEKASKVMMPLLFVFLIIIVIKSLTLDGALEGVKFILQPRVSEITADGILFALGQSFFTLSLGTTGMITYA
SYASKDMTIKSSAISIVVMNIFVSVLAGLAIFPALHSFGYEPQEGPGLLFKVLPMVFSQMHLGTLFYLGFLVLFLFAALT
SSISLLELNVSNFTKNDNTKRKKVAVIGSILVFIISIPATLSFGILKDVRFGAGTIFDNMDFIVSNVLMPLGALGTTLVI
GQLLDKKLLQQYFGKDRFRLFNGWYYLIKYAMPVVIILVFIVQLFS

Specific function: Putative sodium-dependent transporter [H]

COG id: COG0733

COG function: function code R; Na+-dependent transporters of the SNF family

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family [H]

Homologues:

Organism=Homo sapiens, GI33354281, Length=305, Percent_Identity=27.2131147540984, Blast_Score=115, Evalue=1e-25,
Organism=Homo sapiens, GI7657587, Length=373, Percent_Identity=25.4691689008043, Blast_Score=109, Evalue=5e-24,
Organism=Homo sapiens, GI194018524, Length=297, Percent_Identity=26.9360269360269, Blast_Score=108, Evalue=8e-24,
Organism=Homo sapiens, GI11181770, Length=309, Percent_Identity=26.8608414239482, Blast_Score=106, Evalue=3e-23,
Organism=Homo sapiens, GI51468073, Length=295, Percent_Identity=26.4406779661017, Blast_Score=106, Evalue=5e-23,
Organism=Homo sapiens, GI58219014, Length=302, Percent_Identity=26.8211920529801, Blast_Score=101, Evalue=2e-21,
Organism=Homo sapiens, GI188528618, Length=366, Percent_Identity=24.8633879781421, Blast_Score=99, Evalue=6e-21,
Organism=Homo sapiens, GI134304856, Length=400, Percent_Identity=26.25, Blast_Score=99, Evalue=9e-21,
Organism=Homo sapiens, GI4507043, Length=503, Percent_Identity=22.6640159045726, Blast_Score=99, Evalue=1e-20,
Organism=Homo sapiens, GI21361581, Length=409, Percent_Identity=22.2493887530562, Blast_Score=93, Evalue=4e-19,
Organism=Homo sapiens, GI197276623, Length=350, Percent_Identity=24.5714285714286, Blast_Score=93, Evalue=5e-19,
Organism=Homo sapiens, GI54607094, Length=350, Percent_Identity=24.5714285714286, Blast_Score=93, Evalue=5e-19,
Organism=Homo sapiens, GI289191377, Length=507, Percent_Identity=24.0631163708087, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI289191351, Length=507, Percent_Identity=24.0631163708087, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI4557046, Length=507, Percent_Identity=24.0631163708087, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI12408638, Length=291, Percent_Identity=26.1168384879725, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI21361693, Length=212, Percent_Identity=25.9433962264151, Blast_Score=76, Evalue=6e-14,
Organism=Homo sapiens, GI226437581, Length=252, Percent_Identity=25, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI55749589, Length=294, Percent_Identity=23.1292517006803, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI197276625, Length=131, Percent_Identity=32.824427480916, Blast_Score=66, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI25146584, Length=419, Percent_Identity=25.0596658711217, Blast_Score=92, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17554804, Length=352, Percent_Identity=25.2840909090909, Blast_Score=92, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI17555248, Length=429, Percent_Identity=24.7086247086247, Blast_Score=89, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI133952791, Length=65, Percent_Identity=44.6153846153846, Blast_Score=65, Evalue=7e-11,
Organism=Drosophila melanogaster, GI17136952, Length=379, Percent_Identity=27.4406332453826, Blast_Score=119, Evalue=3e-27,
Organism=Drosophila melanogaster, GI281364394, Length=380, Percent_Identity=27.3684210526316, Blast_Score=117, Evalue=2e-26,
Organism=Drosophila melanogaster, GI28574704, Length=380, Percent_Identity=27.3684210526316, Blast_Score=117, Evalue=2e-26,
Organism=Drosophila melanogaster, GI17136950, Length=380, Percent_Identity=27.3684210526316, Blast_Score=117, Evalue=2e-26,
Organism=Drosophila melanogaster, GI28574702, Length=380, Percent_Identity=27.3684210526316, Blast_Score=117, Evalue=2e-26,
Organism=Drosophila melanogaster, GI24762620, Length=410, Percent_Identity=25.609756097561, Blast_Score=116, Evalue=2e-26,
Organism=Drosophila melanogaster, GI24582567, Length=315, Percent_Identity=27.3015873015873, Blast_Score=100, Evalue=3e-21,
Organism=Drosophila melanogaster, GI24639516, Length=296, Percent_Identity=26.3513513513513, Blast_Score=99, Evalue=5e-21,
Organism=Drosophila melanogaster, GI221329674, Length=295, Percent_Identity=26.4406779661017, Blast_Score=99, Evalue=7e-21,
Organism=Drosophila melanogaster, GI24639514, Length=296, Percent_Identity=26.3513513513513, Blast_Score=99, Evalue=7e-21,
Organism=Drosophila melanogaster, GI45551183, Length=390, Percent_Identity=25.6410256410256, Blast_Score=94, Evalue=2e-19,
Organism=Drosophila melanogaster, GI45550877, Length=390, Percent_Identity=25.6410256410256, Blast_Score=94, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24661428, Length=364, Percent_Identity=25, Blast_Score=93, Evalue=4e-19,
Organism=Drosophila melanogaster, GI19921936, Length=367, Percent_Identity=25.0681198910082, Blast_Score=92, Evalue=8e-19,
Organism=Drosophila melanogaster, GI45551088, Length=406, Percent_Identity=23.6453201970443, Blast_Score=87, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24652942, Length=406, Percent_Identity=23.6453201970443, Blast_Score=87, Evalue=3e-17,
Organism=Drosophila melanogaster, GI281364136, Length=422, Percent_Identity=22.9857819905213, Blast_Score=83, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24655079, Length=300, Percent_Identity=24, Blast_Score=80, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24654186, Length=175, Percent_Identity=32, Blast_Score=65, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000175 [H]

Pfam domain/function: PF00209 SNF [H]

EC number: NA

Molecular weight: Translated: 49411; Mature: 49411

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: PS00610 NA_NEUROTRAN_SYMP_1 ; PS50267 NA_NEUROTRAN_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKRQQSQWKSSTGFILASAGSAIGLGAMWKFPYMAGIYGGGAFLAMFLIFTIFVGLPLL
CCCCCHHHHCCCCCEEEEECCCCCCCCHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHH
IMEFTVGKMGRTYTTQIYSKLTGKKWLNIIGWNGNLAVFILFGFYSVIGGWIVIYIGQVL
HHHHHHHHCCCHHHHHHHHHHCCHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
WQLVIFQRINHLQEMNFEAVISNPWLTVLGQGIFIFATMIIVMLGVEKGLEKASKVMMPL
HHHHHHHHHHHHHHCCCHHEECCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFVFLIIIVIKSLTLDGALEGVKFILQPRVSEITADGILFALGQSFFTLSLGTTGMITYA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEEECCCCCHHHHH
SYASKDMTIKSSAISIVVMNIFVSVLAGLAIFPALHSFGYEPQEGPGLLFKVLPMVFSQM
HHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
HLGTLFYLGFLVLFLFAALTSSISLLELNVSNFTKNDNTKRKKVAVIGSILVFIISIPAT
HHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LSFGILKDVRFGAGTIFDNMDFIVSNVLMPLGALGTTLVIGQLLDKKLLQQYFGKDRFRL
HHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
FNGWYYLIKYAMPVVIILVFIVQLFS
HHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MMKRQQSQWKSSTGFILASAGSAIGLGAMWKFPYMAGIYGGGAFLAMFLIFTIFVGLPLL
CCCCCHHHHCCCCCEEEEECCCCCCCCHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHH
IMEFTVGKMGRTYTTQIYSKLTGKKWLNIIGWNGNLAVFILFGFYSVIGGWIVIYIGQVL
HHHHHHHHCCCHHHHHHHHHHCCHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
WQLVIFQRINHLQEMNFEAVISNPWLTVLGQGIFIFATMIIVMLGVEKGLEKASKVMMPL
HHHHHHHHHHHHHHCCCHHEECCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFVFLIIIVIKSLTLDGALEGVKFILQPRVSEITADGILFALGQSFFTLSLGTTGMITYA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEEECCCCCHHHHH
SYASKDMTIKSSAISIVVMNIFVSVLAGLAIFPALHSFGYEPQEGPGLLFKVLPMVFSQM
HHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
HLGTLFYLGFLVLFLFAALTSSISLLELNVSNFTKNDNTKRKKVAVIGSILVFIISIPAT
HHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LSFGILKDVRFGAGTIFDNMDFIVSNVLMPLGALGTTLVIGQLLDKKLLQQYFGKDRFRL
HHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
FNGWYYLIKYAMPVVIILVFIVQLFS
HHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]