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The map label for this gene is nrdD [H]

Identifier: 15675860

GI number: 15675860

Start: 1760346

End: 1762544

Strand: Reverse

Name: nrdD [H]

Synonym: SPy_2110

Alternate gene names: 15675860

Gene position: 1762544-1760346 (Counterclockwise)

Preceding gene: 15675861

Following gene: 15675859

Centisome position: 95.15

GC content: 37.97

Gene sequence:

>2199_bases
ATGGTAAGTTTAGAAGAAGACAAGGTGACTGTTCAACCTGATATTAAAGTGATTAAACGAGATGGTCGCCTTGTTAATTT
TGATAGTACAAAAATCTATAGTGCTTTATTAAAAGCAAGCATGAAAGTAACTCGGATGTCGCCACTTGTTGAGGCTAAAT
TAGAGGCTATTTCTGATCGCATTATAGCAGAAATTATTGAGCGTTTTCCAACTAATATCAAAATTTATGAAATCCAAAAT
ATTGTAGAGCATAAGCTTCTTGCAGCTAATGAATATGCTATTGCAAAAGAATACATTAATTATCGTACTCAGCGTGACTT
TGCACGTTCACAAGCAACAGATATCAATTTTTCTATTGATAAATTAATTAATAAAGATCAAACAGTTGTTAATGAAAATG
CTAACAAAGATAGCGATGTTTTTAATACTCAACGAGATTTAACTGCTGGAATCGTAGGGAAATCGATTGGTTTAAAAATG
TTACCTTCGCATGTTGCTAATGCTCATCAAAAAGGAGATATCCATTACCATGATTTGGATTACAGTCCTTATACACCGAT
GACGAACTGCTGTTTAATTGACTTTAAGGGCATGTTAGCCAATGGCTTTAAAATTGGTAATGCTGAAGTGGAAAGTCCCA
AGTCTATTCAAACTGCAACAGCTCAGATCTCACAGATTATTGCGAATGTAGCATCAAGTCAGTACGGCGGATGCACAGCT
GATCGCATTGACGAGTTTTTAGCCCCATATGCGGAGCTTAACTTTAAAAAACATATGGCTGATGCTAAGAAATGGATCGT
TGAGACTAAGAGAGAAAGCTATGCTTTTGAAAAGACTCAAAAAGATATTTATGATGCGATGCAGTCTTTGGAGTATGAAA
TTAATACGCTCTTTACGTCTAATGGTCAAACACCATTTACTTCTTTAGGATTTGGTTTGGGGACGTCTTGGTTTGAACGT
GAGATTCAAAAAGCTATTTTGACCATTCGGATTAATGGTCTTGGTAGTGAACATCGCACGGCTATTTTCCCTAAATTAAT
TTTCACGGTTAAACGTGGCTTGAATTTAGAACCAGATTCACCAAACTATGATATTAAGACTTTGGCTTTAGAATGTGCGA
CTAAGCGGATGTACCCGGATATGTTATCTTATGATAAAATTATTGATTTGACAGGATCTTTCAAATCTCCAATGGGATGC
CGCTCTTTCCTTCAAGGCTGGAAAGATGAAAATGGGCAAGATGTGACCTCAGGCCGTATGAATCTTGGGGTTGTCACCCT
CAATTTACCTCGCATTGCCATGGAATCAAATGGCGATATGGATAAGTTTTGGGAGCTGTTTAATGAGAGGATGCTAATTA
GTAAGGATGCTTTAATTTATCGTGTCGAACGTGTCACAGAAGCAAAACCAGCAAATGCTCCTATTCTTTATCAATATGGT
GCTTTTGGAAAGCGTTTGGAGAAGACAGGGAATGTAAATGATCTCTTTAAGAATCGTCGTGCAACAGTCTCTCTTGGCTA
TATTGGTCTTTATGAAGTGGCGTCTGTTTTTTATGGTGGTCAATGGGAAGGTAATCCAGATGCTAAAGCTTTTACCTTGT
CAATTGTCAAGGCAATGAAACAGGCCTGTGAGGATTGGTCAGATGAATATGGTTATCATTTCTCTGTTTATTCGACTCCA
TCAGAAAGTTTGACAGATCGCTTTTGTCGTTTAGATACGGAAAAATTTGGCATTGTGACAGATATTACGGATAAAGAATA
CTATACAAATTCTTTTCACTATGATGTGCGTAAGAGTCCGACACCTTTTGAAAAATTAGATTTTGAAAAAGATTATCCAG
AAGCAGGTGCTTCAGGTGGTTTTATCCACTACTGTGAGTATCCTGTTTTGCAACAAAATCCAAAGGCCTTGGAAGCGGTT
TGGGACTATGCTTATGATCGTGTGGGGTATTTGGGAACCAATACGCCTATTGATAAATGCTATAATTGCCAATTTGAAGG
CGATTTTACCCCAACAGAACGTGGTTTTACTTGCCCAAACTGTGGCAATAATGACCCTAAAACAGTTGATGTGGTCAAAC
GTACATGTGGTTACTTGGGGAATCCTCAGGCCCGCCCAATGGTTAACGGTCGCCATAAGGAAATCTCTGCGCGTGTAAAA
CATATGAATGGTTCTACTATAAAATACCCAGGCCTGTAA

Upstream 100 bases:

>100_bases
GTAATTTAATATCAATATATTGTGTTCGAGCAAAAAACTTGACACAATATATTGATTTTTTTAGTTGTCGTGATATAATA
GTTCCGTAAGGAGATTTGAT

Downstream 100 bases:

>100_bases
ACTCAAGCTGGGGGAGAGCCCTTTTGATGGAAATATGATATGCTTAAAAGGTTGCTTCATGCAAGCAATCTTTTATTGTT
TAATGGTTTCTTAGCAATTG

Product: anaerobic ribonucleoside triphosphate reductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 732; Mature: 732

Protein sequence:

>732_residues
MVSLEEDKVTVQPDIKVIKRDGRLVNFDSTKIYSALLKASMKVTRMSPLVEAKLEAISDRIIAEIIERFPTNIKIYEIQN
IVEHKLLAANEYAIAKEYINYRTQRDFARSQATDINFSIDKLINKDQTVVNENANKDSDVFNTQRDLTAGIVGKSIGLKM
LPSHVANAHQKGDIHYHDLDYSPYTPMTNCCLIDFKGMLANGFKIGNAEVESPKSIQTATAQISQIIANVASSQYGGCTA
DRIDEFLAPYAELNFKKHMADAKKWIVETKRESYAFEKTQKDIYDAMQSLEYEINTLFTSNGQTPFTSLGFGLGTSWFER
EIQKAILTIRINGLGSEHRTAIFPKLIFTVKRGLNLEPDSPNYDIKTLALECATKRMYPDMLSYDKIIDLTGSFKSPMGC
RSFLQGWKDENGQDVTSGRMNLGVVTLNLPRIAMESNGDMDKFWELFNERMLISKDALIYRVERVTEAKPANAPILYQYG
AFGKRLEKTGNVNDLFKNRRATVSLGYIGLYEVASVFYGGQWEGNPDAKAFTLSIVKAMKQACEDWSDEYGYHFSVYSTP
SESLTDRFCRLDTEKFGIVTDITDKEYYTNSFHYDVRKSPTPFEKLDFEKDYPEAGASGGFIHYCEYPVLQQNPKALEAV
WDYAYDRVGYLGTNTPIDKCYNCQFEGDFTPTERGFTCPNCGNNDPKTVDVVKRTCGYLGNPQARPMVNGRHKEISARVK
HMNGSTIKYPGL

Sequences:

>Translated_732_residues
MVSLEEDKVTVQPDIKVIKRDGRLVNFDSTKIYSALLKASMKVTRMSPLVEAKLEAISDRIIAEIIERFPTNIKIYEIQN
IVEHKLLAANEYAIAKEYINYRTQRDFARSQATDINFSIDKLINKDQTVVNENANKDSDVFNTQRDLTAGIVGKSIGLKM
LPSHVANAHQKGDIHYHDLDYSPYTPMTNCCLIDFKGMLANGFKIGNAEVESPKSIQTATAQISQIIANVASSQYGGCTA
DRIDEFLAPYAELNFKKHMADAKKWIVETKRESYAFEKTQKDIYDAMQSLEYEINTLFTSNGQTPFTSLGFGLGTSWFER
EIQKAILTIRINGLGSEHRTAIFPKLIFTVKRGLNLEPDSPNYDIKTLALECATKRMYPDMLSYDKIIDLTGSFKSPMGC
RSFLQGWKDENGQDVTSGRMNLGVVTLNLPRIAMESNGDMDKFWELFNERMLISKDALIYRVERVTEAKPANAPILYQYG
AFGKRLEKTGNVNDLFKNRRATVSLGYIGLYEVASVFYGGQWEGNPDAKAFTLSIVKAMKQACEDWSDEYGYHFSVYSTP
SESLTDRFCRLDTEKFGIVTDITDKEYYTNSFHYDVRKSPTPFEKLDFEKDYPEAGASGGFIHYCEYPVLQQNPKALEAV
WDYAYDRVGYLGTNTPIDKCYNCQFEGDFTPTERGFTCPNCGNNDPKTVDVVKRTCGYLGNPQARPMVNGRHKEISARVK
HMNGSTIKYPGL
>Mature_732_residues
MVSLEEDKVTVQPDIKVIKRDGRLVNFDSTKIYSALLKASMKVTRMSPLVEAKLEAISDRIIAEIIERFPTNIKIYEIQN
IVEHKLLAANEYAIAKEYINYRTQRDFARSQATDINFSIDKLINKDQTVVNENANKDSDVFNTQRDLTAGIVGKSIGLKM
LPSHVANAHQKGDIHYHDLDYSPYTPMTNCCLIDFKGMLANGFKIGNAEVESPKSIQTATAQISQIIANVASSQYGGCTA
DRIDEFLAPYAELNFKKHMADAKKWIVETKRESYAFEKTQKDIYDAMQSLEYEINTLFTSNGQTPFTSLGFGLGTSWFER
EIQKAILTIRINGLGSEHRTAIFPKLIFTVKRGLNLEPDSPNYDIKTLALECATKRMYPDMLSYDKIIDLTGSFKSPMGC
RSFLQGWKDENGQDVTSGRMNLGVVTLNLPRIAMESNGDMDKFWELFNERMLISKDALIYRVERVTEAKPANAPILYQYG
AFGKRLEKTGNVNDLFKNRRATVSLGYIGLYEVASVFYGGQWEGNPDAKAFTLSIVKAMKQACEDWSDEYGYHFSVYSTP
SESLTDRFCRLDTEKFGIVTDITDKEYYTNSFHYDVRKSPTPFEKLDFEKDYPEAGASGGFIHYCEYPVLQQNPKALEAV
WDYAYDRVGYLGTNTPIDKCYNCQFEGDFTPTERGFTCPNCGNNDPKTVDVVKRTCGYLGNPQARPMVNGRHKEISARVK
HMNGSTIKYPGL

Specific function: Unknown

COG id: COG1328

COG function: function code F; Oxygen-sensitive ribonucleoside-triphosphate reductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 glycine radical domain [H]

Homologues:

Organism=Escherichia coli, GI1790686, Length=714, Percent_Identity=52.2408963585434, Blast_Score=763, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005144
- InterPro:   IPR001150
- InterPro:   IPR019777
- InterPro:   IPR012833 [H]

Pfam domain/function: PF03477 ATP-cone; PF01228 Gly_radical [H]

EC number: =1.17.4.2 [H]

Molecular weight: Translated: 82843; Mature: 82843

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS51161 ATP_CONE ; PS00850 GLY_RADICAL_1 ; PS51149 GLY_RADICAL_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSLEEDKVTVQPDIKVIKRDGRLVNFDSTKIYSALLKASMKVTRMSPLVEAKLEAISDR
CCCCCCCCEEECCCHHEEECCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIAEIIERFPTNIKIYEIQNIVEHKLLAANEYAIAKEYINYRTQRDFARSQATDINFSID
HHHHHHHHCCCCEEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEHH
KLINKDQTVVNENANKDSDVFNTQRDLTAGIVGKSIGLKMLPSHVANAHQKGDIHYHDLD
HHCCCCCHHHCCCCCCCCHHHHCHHHHHHHHHHHHCCHHHHHHHHHCCHHCCCEEEEECC
YSPYTPMTNCCLIDFKGMLANGFKIGNAEVESPKSIQTATAQISQIIANVASSQYGGCTA
CCCCCCCCCEEEEEEHHHHHCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCH
DRIDEFLAPYAELNFKKHMADAKKWIVETKRESYAFEKTQKDIYDAMQSLEYEINTLFTS
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEEC
NGQTPFTSLGFGLGTSWFEREIQKAILTIRINGLGSEHRTAIFPKLIFTVKRGLNLEPDS
CCCCCHHHHCCCCCHHHHHHHHHHEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCC
PNYDIKTLALECATKRMYPDMLSYDKIIDLTGSFKSPMGCRSFLQGWKDENGQDVTSGRM
CCCCHHHHHHHHHHHHHCHHHHCHHHHEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCE
NLGVVTLNLPRIAMESNGDMDKFWELFNERMLISKDALIYRVERVTEAKPANAPILYQYG
EEEEEEEECCEEEECCCCCHHHHHHHHCCCEEEECCHHHHHHHHHHCCCCCCCCEEEECC
AFGKRLEKTGNVNDLFKNRRATVSLGYIGLYEVASVFYGGQWEGNPDAKAFTLSIVKAMK
CHHHHHHHCCCHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
QACEDWSDEYGYHFSVYSTPSESLTDRFCRLDTEKFGIVTDITDKEYYTNSFHYDVRKSP
HHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCHHCCEEEECCCCCCCCCCEEEECCCCC
TPFEKLDFEKDYPEAGASGGFIHYCEYPVLQQNPKALEAVWDYAYDRVGYLGTNTPIDKC
CCHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHH
YNCQFEGDFTPTERGFTCPNCGNNDPKTVDVVKRTCGYLGNPQARPMVNGRHKEISARVK
EECEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
HMNGSTIKYPGL
HCCCCEEECCCC
>Mature Secondary Structure
MVSLEEDKVTVQPDIKVIKRDGRLVNFDSTKIYSALLKASMKVTRMSPLVEAKLEAISDR
CCCCCCCCEEECCCHHEEECCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIAEIIERFPTNIKIYEIQNIVEHKLLAANEYAIAKEYINYRTQRDFARSQATDINFSID
HHHHHHHHCCCCEEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEHH
KLINKDQTVVNENANKDSDVFNTQRDLTAGIVGKSIGLKMLPSHVANAHQKGDIHYHDLD
HHCCCCCHHHCCCCCCCCHHHHCHHHHHHHHHHHHCCHHHHHHHHHCCHHCCCEEEEECC
YSPYTPMTNCCLIDFKGMLANGFKIGNAEVESPKSIQTATAQISQIIANVASSQYGGCTA
CCCCCCCCCEEEEEEHHHHHCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCH
DRIDEFLAPYAELNFKKHMADAKKWIVETKRESYAFEKTQKDIYDAMQSLEYEINTLFTS
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEEC
NGQTPFTSLGFGLGTSWFEREIQKAILTIRINGLGSEHRTAIFPKLIFTVKRGLNLEPDS
CCCCCHHHHCCCCCHHHHHHHHHHEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCC
PNYDIKTLALECATKRMYPDMLSYDKIIDLTGSFKSPMGCRSFLQGWKDENGQDVTSGRM
CCCCHHHHHHHHHHHHHCHHHHCHHHHEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCE
NLGVVTLNLPRIAMESNGDMDKFWELFNERMLISKDALIYRVERVTEAKPANAPILYQYG
EEEEEEEECCEEEECCCCCHHHHHHHHCCCEEEECCHHHHHHHHHHCCCCCCCCEEEECC
AFGKRLEKTGNVNDLFKNRRATVSLGYIGLYEVASVFYGGQWEGNPDAKAFTLSIVKAMK
CHHHHHHHCCCHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
QACEDWSDEYGYHFSVYSTPSESLTDRFCRLDTEKFGIVTDITDKEYYTNSFHYDVRKSP
HHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCHHCCEEEECCCCCCCCCCEEEECCCCC
TPFEKLDFEKDYPEAGASGGFIHYCEYPVLQQNPKALEAVWDYAYDRVGYLGTNTPIDKC
CCHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHH
YNCQFEGDFTPTERGFTCPNCGNNDPKTVDVVKRTCGYLGNPQARPMVNGRHKEISARVK
EECEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
HMNGSTIKYPGL
HCCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8421692; 7610040; 9278503; 8083158; 7852304 [H]