Click here to switch to the map view.

The map label for this gene is ykoM [H]

Identifier: 15675758

GI number: 15675758

Start: 1627844

End: 1628272

Strand: Reverse

Name: ykoM [H]

Synonym: SPy_1960

Alternate gene names: 15675758

Gene position: 1628272-1627844 (Counterclockwise)

Preceding gene: 15675759

Following gene: 15675757

Centisome position: 87.9

GC content: 39.39

Gene sequence:

>429_bases
ATGAGTCATTTAGATAAGAACACCGCTTTGAAAGCCATGGTGGTGTTTCGTAAAGCTCAGCGAACGCTAGATGCTTTTGG
GGCTGATATTTTTAAAAAGGCAGATTTAACAGCCACGCAGTTCAGTGTGCTTGAAGTACTATATACTAAAGGCTGTATGC
GAATCAATCACTTGATTGATTCTTTGTTAGCGACTTCGGGGAATATGACTGTTGTACTAAATAATATGGAACGCAATGGC
TGGATTAGCAAGTGCAAAGACAAAACGGATAAAAGAGCCTATGTGGTTACCTTAACAGATAAGGGTACTCGCTTGATTGA
AGCTGTTTTGCCTAAACACGTCGCACGGGTGGAAGAAGCCTTTGCTGTTTTGACTGAAAAAGAACAACTTTGTCTGATTG
AACTTCTCAAAAAGTTCAAACAATTATAA

Upstream 100 bases:

>100_bases
ATGATAGTAATATGCAAAGTCATAAAAGAAGAGGGACAAGATCACTTTCTAATCTCTCTGATACTAAACTGTGACATACC
GTATAAAGCGAGGAAATCAA

Downstream 100 bases:

>100_bases
ACAAATCTCTTTACAGCTCTTCTTAGAGAAGATATAATTACTACATAGTGATAAATTTCAAAAAGAAGTATCAATGAAAT
ACCACTTTTAGAAAGCTTTA

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 141

Protein sequence:

>142_residues
MSHLDKNTALKAMVVFRKAQRTLDAFGADIFKKADLTATQFSVLEVLYTKGCMRINHLIDSLLATSGNMTVVLNNMERNG
WISKCKDKTDKRAYVVTLTDKGTRLIEAVLPKHVARVEEAFAVLTEKEQLCLIELLKKFKQL

Sequences:

>Translated_142_residues
MSHLDKNTALKAMVVFRKAQRTLDAFGADIFKKADLTATQFSVLEVLYTKGCMRINHLIDSLLATSGNMTVVLNNMERNG
WISKCKDKTDKRAYVVTLTDKGTRLIEAVLPKHVARVEEAFAVLTEKEQLCLIELLKKFKQL
>Mature_141_residues
SHLDKNTALKAMVVFRKAQRTLDAFGADIFKKADLTATQFSVLEVLYTKGCMRINHLIDSLLATSGNMTVVLNNMERNGW
ISKCKDKTDKRAYVVTLTDKGTRLIEAVLPKHVARVEEAFAVLTEKEQLCLIELLKKFKQL

Specific function: Unknown

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 16059; Mature: 15928

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHLDKNTALKAMVVFRKAQRTLDAFGADIFKKADLTATQFSVLEVLYTKGCMRINHLID
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
SLLATSGNMTVVLNNMERNGWISKCKDKTDKRAYVVTLTDKGTRLIEAVLPKHVARVEEA
HHHHCCCCEEEEEECCCCCCCHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHH
FAVLTEKEQLCLIELLKKFKQL
HHHHHCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SHLDKNTALKAMVVFRKAQRTLDAFGADIFKKADLTATQFSVLEVLYTKGCMRINHLID
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
SLLATSGNMTVVLNNMERNGWISKCKDKTDKRAYVVTLTDKGTRLIEAVLPKHVARVEEA
HHHHCCCCEEEEEECCCCCCCHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHH
FAVLTEKEQLCLIELLKKFKQL
HHHHHCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]