Definition | Streptococcus pyogenes M1 GAS chromosome, complete genome. |
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Accession | NC_002737 |
Length | 1,852,441 |
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The map label for this gene is rnhC
Identifier: 15675667
GI number: 15675667
Start: 1526806
End: 1527708
Strand: Direct
Name: rnhC
Synonym: SPy_1841
Alternate gene names: 15675667
Gene position: 1526806-1527708 (Clockwise)
Preceding gene: 15675661
Following gene: 15675668
Centisome position: 82.42
GC content: 36.99
Gene sequence:
>903_bases ATGAATACCTTAGTTTTGAAAATAGATGCTATACTGAGTAAACATTTAAAAAAACAGCTAGCCCCCTACACCATCAGTAG CCAAAATACCTATGTAGCCTTTGCTGCTAAAAAAAATGGGGTTACTGTTTTGCTGTACAAATCCGGAAAATTAGTTCTCC AGGGAAACGGTGCAAATGCTTTAGCTCAAGAGCTTAATCTTCCAGTAGCTAAGACAGTTTTTGAAGCAAGCAACAATAGC CAAGATATACCTATAATCGGCAGTGATGAGGTGGGTAATGGCTCTTATTTTGGTGGGATTGCTGTTGTGGCAAGTTTTGT CGATCCTAAAGATCATTCCTTCCTGAAAAAGCTTGGGGTTGATGATTCTAAAAAATTATCGGATAAAACCATTCAACAGA TTGCGCCTCTGTTAGAGAAACAAATACCTCATCAATCACTTCTCCTATCACCTAAAAAATATAACGAATTGGTTGGTAAA AGTAAACCATATAATGCCATTTCTATCAAAGTTGCTCTTCATAACCAAGCTATTTTTTTGTTGTTACAAAAAGGCATTCA ACCTAAACAAATTGTTATTGATGCTTTCACTAGCCAATCAAATTATGAAAAGCATCTAAAAAAGGAAAAAAACCATTTCC CAAATCCTCTAACCTTTCAAGAAAAGGCAGAAAGTCACTATTTGGCTGTGGCTGTTAGCTCTATCATTGCTAGAAATCTA TTTTTAGACAATCTCGATCAATTAGGTCAAGATTTAGGTTACCAACTCCCAAGCGGTGCTGGTTCAGCTTCAGATAAAGT TGCTAGCCAACTCTTAGCCGCTTATGGTATGTCTAGCTTAGAATATAGTGCTAAACTTCACTTCGCCAACACTCACAAAG CGCAAGCGCTTCTCACTAAATAA
Upstream 100 bases:
>100_bases CCATTGCCCTAACCCGTCTAAACATTCGAGTCTCTGTTTTCTTTGTTAAATAAACTTATGAATTAACCATAGTCAACTAT TTTATGTTAAAATAATTATT
Downstream 100 bases:
>100_bases AAGGAATCATATGAAACAGTTTATTAAAGAATGGGGCCCATTCACTCTCTTTTTAATTCTCTTTGGTCTATCTCGTCTTT TTTTGTGGCAGGCTGTTAAA
Product: ribonuclease HIII
Products: NA
Alternate protein names: RNase HIII
Number of amino acids: Translated: 300; Mature: 300
Protein sequence:
>300_residues MNTLVLKIDAILSKHLKKQLAPYTISSQNTYVAFAAKKNGVTVLLYKSGKLVLQGNGANALAQELNLPVAKTVFEASNNS QDIPIIGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGVDDSKKLSDKTIQQIAPLLEKQIPHQSLLLSPKKYNELVGK SKPYNAISIKVALHNQAIFLLLQKGIQPKQIVIDAFTSQSNYEKHLKKEKNHFPNPLTFQEKAESHYLAVAVSSIIARNL FLDNLDQLGQDLGYQLPSGAGSASDKVASQLLAAYGMSSLEYSAKLHFANTHKAQALLTK
Sequences:
>Translated_300_residues MNTLVLKIDAILSKHLKKQLAPYTISSQNTYVAFAAKKNGVTVLLYKSGKLVLQGNGANALAQELNLPVAKTVFEASNNS QDIPIIGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGVDDSKKLSDKTIQQIAPLLEKQIPHQSLLLSPKKYNELVGK SKPYNAISIKVALHNQAIFLLLQKGIQPKQIVIDAFTSQSNYEKHLKKEKNHFPNPLTFQEKAESHYLAVAVSSIIARNL FLDNLDQLGQDLGYQLPSGAGSASDKVASQLLAAYGMSSLEYSAKLHFANTHKAQALLTK >Mature_300_residues MNTLVLKIDAILSKHLKKQLAPYTISSQNTYVAFAAKKNGVTVLLYKSGKLVLQGNGANALAQELNLPVAKTVFEASNNS QDIPIIGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGVDDSKKLSDKTIQQIAPLLEKQIPHQSLLLSPKKYNELVGK SKPYNAISIKVALHNQAIFLLLQKGIQPKQIVIDAFTSQSNYEKHLKKEKNHFPNPLTFQEKAESHYLAVAVSSIIARNL FLDNLDQLGQDLGYQLPSGAGSASDKVASQLLAAYGMSSLEYSAKLHFANTHKAQALLTK
Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
COG id: COG1039
COG function: function code L; Ribonuclease HIII
Gene ontology:
Cell location: Cytoplasm (Potential)
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the RNase HII family. RnhC subfamily
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): RNH3_STRP1 (P66677)
Other databases:
- EMBL: AE004092 - EMBL: CP000017 - RefSeq: NP_269841.1 - RefSeq: YP_282927.1 - ProteinModelPortal: P66677 - SMR: P66677 - EnsemblBacteria: EBSTRT00000000909 - EnsemblBacteria: EBSTRT00000028656 - GeneID: 3571331 - GeneID: 902058 - GenomeReviews: AE004092_GR - GenomeReviews: CP000017_GR - KEGG: spy:SPy_1841 - KEGG: spz:M5005_Spy_1564 - GeneTree: EBGT00050000028041 - HOGENOM: HBG288559 - OMA: ASIIARY - ProtClustDB: PRK00996 - BioCyc: SPYO160490:SPY1841-MONOMER - BioCyc: SPYO293653:M5005_SPY1564-MONOMER - GO: GO:0005737 - HAMAP: MF_00053 - InterPro: IPR001352 - InterPro: IPR004641 - InterPro: IPR012337 - PIRSF: PIRSF037748 - TIGRFAMs: TIGR00716
Pfam domain/function: PF01351 RNase_HII; SSF53098 RNaseH_fold
EC number: =3.1.26.4
Molecular weight: Translated: 32655; Mature: 32655
Theoretical pI: Translated: 9.99; Mature: 9.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 0.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTLVLKIDAILSKHLKKQLAPYTISSQNTYVAFAAKKNGVTVLLYKSGKLVLQGNGANA CCEEEEEHHHHHHHHHHHHCCCEEECCCCEEEEEEECCCCEEEEEEECCEEEEECCCCHH LAQELNLPVAKTVFEASNNSQDIPIIGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGV HHHHHCCCHHHHHHHCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCC DDSKKLSDKTIQQIAPLLEKQIPHQSLLLSPKKYNELVGKSKPYNAISIKVALHNQAIFL CCCHHHHHHHHHHHHHHHHHHCCHHHHEECCHHHHHHHCCCCCCCEEEEEEEECCHHHHH LLQKGIQPKQIVIDAFTSQSNYEKHLKKEKNHFPNPLTFQEKAESHYLAVAVSSIIARNL HHHHCCCCHHEEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHH FLDNLDQLGQDLGYQLPSGAGSASDKVASQLLAAYGMSSLEYSAKLHFANTHKAQALLTK HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHCCCC >Mature Secondary Structure MNTLVLKIDAILSKHLKKQLAPYTISSQNTYVAFAAKKNGVTVLLYKSGKLVLQGNGANA CCEEEEEHHHHHHHHHHHHCCCEEECCCCEEEEEEECCCCEEEEEEECCEEEEECCCCHH LAQELNLPVAKTVFEASNNSQDIPIIGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGV HHHHHCCCHHHHHHHCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCC DDSKKLSDKTIQQIAPLLEKQIPHQSLLLSPKKYNELVGKSKPYNAISIKVALHNQAIFL CCCHHHHHHHHHHHHHHHHHHCCHHHHEECCHHHHHHHCCCCCCCEEEEEEEECCHHHHH LLQKGIQPKQIVIDAFTSQSNYEKHLKKEKNHFPNPLTFQEKAESHYLAVAVSSIIARNL HHHHCCCCHHEEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHH FLDNLDQLGQDLGYQLPSGAGSASDKVASQLLAAYGMSSLEYSAKLHFANTHKAQALLTK HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11296296