Definition | Streptococcus pyogenes M1 GAS chromosome, complete genome. |
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Accession | NC_002737 |
Length | 1,852,441 |
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The map label for this gene is ssb2
Identifier: 15675657
GI number: 15675657
Start: 1519100
End: 1519591
Strand: Reverse
Name: ssb2
Synonym: SPy_1830
Alternate gene names: 15675657
Gene position: 1519591-1519100 (Counterclockwise)
Preceding gene: 15675658
Following gene: 15675656
Centisome position: 82.03
GC content: 42.68
Gene sequence:
>492_bases ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCTTTGATCGGAGTTACGGGTCGTATTCAGACACGT AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGTCGTGC TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTACTCAGCGC CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT CTTCCATTCTAG
Upstream 100 bases:
>100_bases AGCTCTTAACGAGTTTGACCGTCTTTCAAAAATCAATGGTGACATTCTTCGTCACATGATCGTTAAACTTGACGCTTAAT TCCAACTAAGAGGGTAGTTT
Downstream 100 bases:
>100_bases TCAGAATGGATTGAACGAATACGAAATTATTTGAGTTCGGGCTAAAAATTTAGAACTTAGAATTTAGATCAACTCCCTAG GAAATCAAGATTTCTTGCCA
Product: single-stranded DNA-binding protein
Products: NA
Alternate protein names: SSB 2; Helix-destabilizing protein 2
Number of amino acids: Translated: 163; Mature: 163
Protein sequence:
>163_residues MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD LPF
Sequences:
>Translated_163_residues MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD LPF >Mature_163_residues MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD LPF
Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair
COG id: COG0629
COG function: function code L; Single-stranded DNA-binding protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 SSB domain
Homologues:
Organism=Escherichia coli, GI1790494, Length=175, Percent_Identity=30.2857142857143, Blast_Score=74, Evalue=4e-15,
Paralogues:
None
Copy number: 1622 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): SSB2_STRP6 (Q5XA62)
Other databases:
- EMBL: CP000003 - RefSeq: YP_060884.1 - ProteinModelPortal: Q5XA62 - SMR: Q5XA62 - EnsemblBacteria: EBSTRT00000038720 - GeneID: 2941766 - GenomeReviews: CP000003_GR - KEGG: spa:M6_Spy1566 - GeneTree: EBGT00050000026938 - HOGENOM: HBG755544 - OMA: VENMEML - ProtClustDB: PRK07275 - BioCyc: SPYO286636:M6_SPY1566-MONOMER - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR000424 - InterPro: IPR011344 - Gene3D: G3DSA:2.40.50.140 - PANTHER: PTHR10302 - TIGRFAMs: TIGR00621
Pfam domain/function: PF00436 SSB; SSF50249 Nucleic_acid_OB
EC number: NA
Molecular weight: Translated: 17982; Mature: 17982
Theoretical pI: Translated: 4.89; Mature: 4.89
Prosite motif: PS50935 SSB
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAEN CCCCEEEEEECCCCCEEEECCCCEEEEEEEEEEECHHCCCCCCCCCCEEEEEEECCCHHH LANWAKKGALIGVTGRIQTRNYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGG HHHHHHCCCEEEEECEEEECCCCCCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCC FNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDDLPF CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAEN CCCCEEEEEECCCCCEEEECCCCEEEEEEEEEEECHHCCCCCCCCCCEEEEEEECCCHHH LANWAKKGALIGVTGRIQTRNYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGG HHHHHHCCCEEEEECEEEECCCCCCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCC FNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDDLPF CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA