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The map label for this gene is nusB

Identifier: 15675648

GI number: 15675648

Start: 1510582

End: 1511034

Strand: Reverse

Name: nusB

Synonym: SPy_1818

Alternate gene names: 15675648

Gene position: 1511034-1510582 (Counterclockwise)

Preceding gene: 15675649

Following gene: 15675645

Centisome position: 81.57

GC content: 36.2

Gene sequence:

>453_bases
ATGACTAACAGCTTTCAAAATTCAAGAAGAGATTTGCGTGAACGTGCCTTTCAGGCTTTATTTAACATAGAGATGGGAGC
TGAGTTATTGGCAGCTTCTCAGTTTGCCTATGGTTATGATAAAGTAACAGGGGAGGACGCTCAAGTATTGGAGCTGCCGA
TTTTTTTATTAAGTCTTGTGACGGGTGTCAATAATCATAAAGAAGAGTTGGATAACTTGATATCAACTCATTTGAAAAAA
GGTTGGTCGTTAGAACGCTTGACACTAACAGACAAAACGTTATTACGACTAGGTCTTTTTGAAATCAAGTATTTTGACAA
AACACCAGATCGTGTTGCACTAAACGAAATCATTGAAGTAGTTAAAAAATATTCTGATGAAACCTCTGCTAAATTTATTA
ATGGCTTACTTAGCCAATATGTCTCGGGAGCTCCTTCAGCAAATAAATCATAA

Upstream 100 bases:

>100_bases
GAAGTGCCTATTTCTGCAGTTAATATCCATGTTGAAGGTATTGTTGCGGAAAAGACACCAAAACCAGATTTGAAGTCACT
TTTTGATGAGGATTTCTTGG

Downstream 100 bases:

>100_bases
TAAGTCGGAGCAATCTTAGGATTGTATCCGATTTTTTCAATTTATGTACGAATATTAAAAGACAAACAAGCATACTCTCG
CATCTAGAAAGAGTAAGCTT

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 150; Mature: 149

Protein sequence:

>150_residues
MTNSFQNSRRDLRERAFQALFNIEMGAELLAASQFAYGYDKVTGEDAQVLELPIFLLSLVTGVNNHKEELDNLISTHLKK
GWSLERLTLTDKTLLRLGLFEIKYFDKTPDRVALNEIIEVVKKYSDETSAKFINGLLSQYVSGAPSANKS

Sequences:

>Translated_150_residues
MTNSFQNSRRDLRERAFQALFNIEMGAELLAASQFAYGYDKVTGEDAQVLELPIFLLSLVTGVNNHKEELDNLISTHLKK
GWSLERLTLTDKTLLRLGLFEIKYFDKTPDRVALNEIIEVVKKYSDETSAKFINGLLSQYVSGAPSANKS
>Mature_149_residues
TNSFQNSRRDLRERAFQALFNIEMGAELLAASQFAYGYDKVTGEDAQVLELPIFLLSLVTGVNNHKEELDNLISTHLKKG
WSLERLTLTDKTLLRLGLFEIKYFDKTPDRVALNEIIEVVKKYSDETSAKFINGLLSQYVSGAPSANKS

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

None

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_STRP1 (Q99Y88)

Other databases:

- EMBL:   AE004092
- EMBL:   CP000017
- RefSeq:   NP_269822.1
- RefSeq:   YP_282908.1
- ProteinModelPortal:   Q99Y88
- SMR:   Q99Y88
- EnsemblBacteria:   EBSTRT00000000274
- EnsemblBacteria:   EBSTRT00000028830
- GeneID:   3571351
- GeneID:   902039
- GenomeReviews:   AE004092_GR
- GenomeReviews:   CP000017_GR
- KEGG:   spy:SPy_1818
- KEGG:   spz:M5005_Spy_1545
- GeneTree:   EBGT00050000027568
- HOGENOM:   HBG734409
- OMA:   FAYDYDK
- ProtClustDB:   PRK00202
- BioCyc:   SPYO160490:SPY1818-MONOMER
- BioCyc:   SPYO293653:M5005_SPY1545-MONOMER
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 16934; Mature: 16803

Theoretical pI: Translated: 5.81; Mature: 5.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNSFQNSRRDLRERAFQALFNIEMGAELLAASQFAYGYDKVTGEDAQVLELPIFLLSLV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCCCCCHHHHHHHHHHHHHH
TGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDKTPDRVALNEIIEV
HCCCCHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
VKKYSDETSAKFINGLLSQYVSGAPSANKS
HHHHCCHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TNSFQNSRRDLRERAFQALFNIEMGAELLAASQFAYGYDKVTGEDAQVLELPIFLLSLV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCCCCCHHHHHHHHHHHHHH
TGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDKTPDRVALNEIIEV
HCCCCHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
VKKYSDETSAKFINGLLSQYVSGAPSANKS
HHHHCCHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11296296