Definition | Streptococcus pyogenes M1 GAS chromosome, complete genome. |
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Accession | NC_002737 |
Length | 1,852,441 |
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The map label for this gene is scrR [H]
Identifier: 15675647
GI number: 15675647
Start: 1509476
End: 1510441
Strand: Direct
Name: scrR [H]
Synonym: SPy_1817
Alternate gene names: 15675647
Gene position: 1509476-1510441 (Clockwise)
Preceding gene: 15675646
Following gene: 15675654
Centisome position: 81.49
GC content: 38.51
Gene sequence:
>966_bases GTGGTCGCAAAATTAACAGACGTGGCAGCCTTGGCGGGTGTCAGTCCAACAACTGTTTCGCGAGTAATCAACAAAAAAGG CTACCTTTCCCAAAAAACAGTGAATAAGGTGAATAAGGCCATGCGTGAATTGGGCTACAAGCCTAACAATCTCGCTAGAA GTTTGCAAGGTAAATCAACCCAACTCATTGGGCTTATCTTCCCCAACATTAGCAATATCTTTTACGCTGAATTAATTGAA CATTTGGAAATTGAATTGTTTAAACAGGGCTACAAAACTATTATTTGCAATAGTGAACATAATCCCGTCAAAGAACGCGA ATATTTAGAAATGCTTGCGGCCAATCAAGTGGACGGCATTATTTCTTCCAGTCATAATTTGGGAATTGAGGATTATGAGC GTGTCGAAGCTCCTATTGTAGCTTTTGACCGTAATCTAGCGCCAAATATCCCGGTTATTTCTTCAGATAATTTTGAAGGT GGTAAATTAGCCGCACAAACTTTGCAAAAACACGGTTGTCAAAACATTGTCATGATTACAGGTAATGACAATTCTGATTC GCCCACAGGGTTGCGCCAGCTAGGGTTTAACTACCAGCTCAAACGAAGTGCAGAAATCATCAAATTACCAAATAACCTAT CTCCTGTTAGACGCGAAATGGAAATTAAATCCATTTTGGCAACCCGAAAACCTGATGGCCTTTTCGTTTCTGATGATTTA ACTGCTATCCTCATTATGAAAGTAGCCAAACAACTTCACATTACTATTCCAGAGGATATGAAAGTCATAGGTTATGATGG AACGACATTTATCCAGCAATATGTTCCTCAATTAGCGACCATTCGTCAACCTATTGATGAGATTGCTAAATTGAGTGTCG AAATACTCATCAAAAAAATTAAAAAAGAAAAAACCAGTAAAGACTATATTTTACCGATTACGCTACTTCCAGGAGCAAGT ATTTAA
Upstream 100 bases:
>100_bases GTCCTAACTAGTCGGGTTTTCCCAACCCACGGACAAACAGGTATCCAAGTAGTAGAAGGACAAGCTTTTGGACATTATTA TGAAATGAGGTATTAGGCAA
Downstream 100 bases:
>100_bases ACAAAACATAACCAATCACTAATTACTCTAAAAGACAAACAAGCTTACTCTTTCTAGATGCGAGAGTATGCTTGTTTGTC TTTTAATATTCGTACATAAA
Product: putative sucrose operon repressor
Products: NA
Alternate protein names: Scr operon regulatory protein [H]
Number of amino acids: Translated: 321; Mature: 321
Protein sequence:
>321_residues MVAKLTDVAALAGVSPTTVSRVINKKGYLSQKTVNKVNKAMRELGYKPNNLARSLQGKSTQLIGLIFPNISNIFYAELIE HLEIELFKQGYKTIICNSEHNPVKEREYLEMLAANQVDGIISSSHNLGIEDYERVEAPIVAFDRNLAPNIPVISSDNFEG GKLAAQTLQKHGCQNIVMITGNDNSDSPTGLRQLGFNYQLKRSAEIIKLPNNLSPVRREMEIKSILATRKPDGLFVSDDL TAILIMKVAKQLHITIPEDMKVIGYDGTTFIQQYVPQLATIRQPIDEIAKLSVEILIKKIKKEKTSKDYILPITLLPGAS I
Sequences:
>Translated_321_residues MVAKLTDVAALAGVSPTTVSRVINKKGYLSQKTVNKVNKAMRELGYKPNNLARSLQGKSTQLIGLIFPNISNIFYAELIE HLEIELFKQGYKTIICNSEHNPVKEREYLEMLAANQVDGIISSSHNLGIEDYERVEAPIVAFDRNLAPNIPVISSDNFEG GKLAAQTLQKHGCQNIVMITGNDNSDSPTGLRQLGFNYQLKRSAEIIKLPNNLSPVRREMEIKSILATRKPDGLFVSDDL TAILIMKVAKQLHITIPEDMKVIGYDGTTFIQQYVPQLATIRQPIDEIAKLSVEILIKKIKKEKTSKDYILPITLLPGAS I >Mature_321_residues MVAKLTDVAALAGVSPTTVSRVINKKGYLSQKTVNKVNKAMRELGYKPNNLARSLQGKSTQLIGLIFPNISNIFYAELIE HLEIELFKQGYKTIICNSEHNPVKEREYLEMLAANQVDGIISSSHNLGIEDYERVEAPIVAFDRNLAPNIPVISSDNFEG GKLAAQTLQKHGCQNIVMITGNDNSDSPTGLRQLGFNYQLKRSAEIIKLPNNLSPVRREMEIKSILATRKPDGLFVSDDL TAILIMKVAKQLHITIPEDMKVIGYDGTTFIQQYVPQLATIRQPIDEIAKLSVEILIKKIKKEKTSKDYILPITLLPGAS I
Specific function: Negative regulator of scrB expression [H]
COG id: COG1609
COG function: function code K; Transcriptional regulators
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1790194, Length=316, Percent_Identity=33.2278481012658, Blast_Score=159, Evalue=2e-40, Organism=Escherichia coli, GI1787948, Length=312, Percent_Identity=30.1282051282051, Blast_Score=151, Evalue=5e-38, Organism=Escherichia coli, GI1789068, Length=301, Percent_Identity=29.5681063122924, Blast_Score=124, Evalue=9e-30, Organism=Escherichia coli, GI1790369, Length=312, Percent_Identity=26.9230769230769, Blast_Score=119, Evalue=3e-28, Organism=Escherichia coli, GI48994940, Length=334, Percent_Identity=26.3473053892216, Blast_Score=112, Evalue=4e-26, Organism=Escherichia coli, GI1786540, Length=329, Percent_Identity=27.6595744680851, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI1788474, Length=304, Percent_Identity=26.3157894736842, Blast_Score=102, Evalue=4e-23, Organism=Escherichia coli, GI1786268, Length=320, Percent_Identity=29.375, Blast_Score=99, Evalue=4e-22, Organism=Escherichia coli, GI1790715, Length=314, Percent_Identity=23.8853503184713, Blast_Score=99, Evalue=5e-22, Organism=Escherichia coli, GI1789202, Length=298, Percent_Identity=28.5234899328859, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1787580, Length=315, Percent_Identity=24.7619047619048, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1787906, Length=184, Percent_Identity=30.4347826086957, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI1790689, Length=315, Percent_Identity=23.4920634920635, Blast_Score=77, Evalue=2e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000843 - InterPro: IPR010982 - InterPro: IPR001761 [H]
Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]
EC number: NA
Molecular weight: Translated: 35683; Mature: 35683
Theoretical pI: Translated: 9.34; Mature: 9.34
Prosite motif: PS00356 HTH_LACI_1 ; PS50932 HTH_LACI_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVAKLTDVAALAGVSPTTVSRVINKKGYLSQKTVNKVNKAMRELGYKPNNLARSLQGKST CCCCHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCC QLIGLIFPNISNIFYAELIEHLEIELFKQGYKTIICNSEHNPVKEREYLEMLAANQVDGI EEEEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHH ISSSHNLGIEDYERVEAPIVAFDRNLAPNIPVISSDNFEGGKLAAQTLQKHGCQNIVMIT HCCCCCCCCHHHHHHCCCEEEECCCCCCCCCEEECCCCCCHHHHHHHHHHCCCCEEEEEE GNDNSDSPTGLRQLGFNYQLKRSAEIIKLPNNLSPVRREMEIKSILATRKPDGLFVSDDL CCCCCCCCHHHHHHCCCEEECCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEECCCH TAILIMKVAKQLHITIPEDMKVIGYDGTTFIQQYVPQLATIRQPIDEIAKLSVEILIKKI HHHHHHHHHHHHEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KKEKTSKDYILPITLLPGASI HHHCCCCCEEEEEEECCCCCC >Mature Secondary Structure MVAKLTDVAALAGVSPTTVSRVINKKGYLSQKTVNKVNKAMRELGYKPNNLARSLQGKST CCCCHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCC QLIGLIFPNISNIFYAELIEHLEIELFKQGYKTIICNSEHNPVKEREYLEMLAANQVDGI EEEEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHH ISSSHNLGIEDYERVEAPIVAFDRNLAPNIPVISSDNFEGGKLAAQTLQKHGCQNIVMIT HCCCCCCCCHHHHHHCCCEEEECCCCCCCCCEEECCCCCCHHHHHHHHHHCCCCEEEEEE GNDNSDSPTGLRQLGFNYQLKRSAEIIKLPNNLSPVRREMEIKSILATRKPDGLFVSDDL CCCCCCCCHHHHHHCCCEEECCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEECCCH TAILIMKVAKQLHITIPEDMKVIGYDGTTFIQQYVPQLATIRQPIDEIAKLSVEILIKKI HHHHHHHHHHHHEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KKEKTSKDYILPITLLPGASI HHHCCCCCEEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9673256; 12397186 [H]