Definition | Streptococcus pyogenes M1 GAS chromosome, complete genome. |
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Accession | NC_002737 |
Length | 1,852,441 |
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The map label for this gene is rbfA [H]
Identifier: 15675570
GI number: 15675570
Start: 1424225
End: 1424581
Strand: Reverse
Name: rbfA [H]
Synonym: SPy_1719
Alternate gene names: 15675570
Gene position: 1424581-1424225 (Counterclockwise)
Preceding gene: 15675571
Following gene: 15675568
Centisome position: 76.9
GC content: 38.94
Gene sequence:
>357_bases ATGGCTATGGCTAATCATCGTATTGACCGCGTTGGGATGGAAATCAAGCGCGAAGTAAATGATATTCTTCAGAAAAAAGT GCGTGATCCACGCGTTCAGGGAGTAACGATTACAGAAGTGCAAATGCAGGGTGACTTGTCACTTGCTAAAGTTTATTACA CTATTATGAGTGACTTGGCATCTGATAATCAAAAAGCACAAACAGGGCTTGAAAAAGCGACTGGAACGATTAAACGTGAA CTTGGCAAACAATTGACCATGTACAAAATTCCAGATTTGGTGTTTGAAAAAGACAATTCCATCGCCTATGGTAATAAAAT TGATCAACTCTTACGAGATCTTGACAACAAATCCTAA
Upstream 100 bases:
>100_bases TGGAATTCTCAGATTCCCTTTAATTGTCGTTATCAAAACAGGTAGCAATGTCATAAGCTGGGCTTTCAGCCTAGCTTTTG TTTTAAAATGTGGAAAGGAA
Downstream 100 bases:
>100_bases GTATTGCGGTGCGGATGTTATGACAGAAAGAGCCTTATCATTATGATAGGGCTCTTTTTAATTGTTATTTTGTGGTGCAA ACTACAAAAAAAACACCAGA
Product: ribosome-binding factor A
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 118; Mature: 117
Protein sequence:
>118_residues MAMANHRIDRVGMEIKREVNDILQKKVRDPRVQGVTITEVQMQGDLSLAKVYYTIMSDLASDNQKAQTGLEKATGTIKRE LGKQLTMYKIPDLVFEKDNSIAYGNKIDQLLRDLDNKS
Sequences:
>Translated_118_residues MAMANHRIDRVGMEIKREVNDILQKKVRDPRVQGVTITEVQMQGDLSLAKVYYTIMSDLASDNQKAQTGLEKATGTIKRE LGKQLTMYKIPDLVFEKDNSIAYGNKIDQLLRDLDNKS >Mature_117_residues AMANHRIDRVGMEIKREVNDILQKKVRDPRVQGVTITEVQMQGDLSLAKVYYTIMSDLASDNQKAQTGLEKATGTIKREL GKQLTMYKIPDLVFEKDNSIAYGNKIDQLLRDLDNKS
Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]
COG id: COG0858
COG function: function code J; Ribosome-binding factor A
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the rbfA family [H]
Homologues:
Organism=Escherichia coli, GI1789558, Length=113, Percent_Identity=37.1681415929204, Blast_Score=73, Evalue=6e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015946 - InterPro: IPR000238 - InterPro: IPR020053 - ProDom: PD007327 [H]
Pfam domain/function: PF02033 RBFA [H]
EC number: NA
Molecular weight: Translated: 13415; Mature: 13283
Theoretical pI: Translated: 9.40; Mature: 9.40
Prosite motif: PS01319 RBFA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 5.1 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAMANHRIDRVGMEIKREVNDILQKKVRDPRVQGVTITEVQMQGDLSLAKVYYTIMSDLA CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHH SDNQKAQTGLEKATGTIKRELGKQLTMYKIPDLVFEKDNSIAYGNKIDQLLRDLDNKS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEECCCCCCCCHHHHHHHHHHCCCC >Mature Secondary Structure AMANHRIDRVGMEIKREVNDILQKKVRDPRVQGVTITEVQMQGDLSLAKVYYTIMSDLA CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHH SDNQKAQTGLEKATGTIKRELGKQLTMYKIPDLVFEKDNSIAYGNKIDQLLRDLDNKS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEECCCCCCCCHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11296296 [H]