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The map label for this gene is araR [H]

Identifier: 15675484

GI number: 15675484

Start: 1319218

End: 1320258

Strand: Reverse

Name: araR [H]

Synonym: SPy_1602

Alternate gene names: 15675484

Gene position: 1320258-1319218 (Counterclockwise)

Preceding gene: 15675487

Following gene: 15675483

Centisome position: 71.27

GC content: 41.31

Gene sequence:

>1041_bases
ATGACAAAATTATTATACAAAAAGATATATCATTTCATTAAAGAGCAGATAGCATCAGGTCGTTTGCAAATTGGTGACCG
CCTACCTACTGAAAAAGAATTGTCAGAACAGTTCTCGGTTAGCCGTATCACTTCTAAGCGAGCGCTTGTAGAACTGGAGC
AAGAAGGCTTGATTACGAGAAGTCGTGGGAAAGGAAGCTTCGTAGCTAAAAAGCAAGTGACGTCCCCTGAAGCGAATAAG
GATTTATTGTTGATTCTTCCTTTTGCTTCTGATTATGAATTGGGAGATTATGCTAAGGGAATTATGACCTCCATTGCTGA
AACAGGTTACCGTCTCATGGTTCAATTGGCCAGTACAGTAAGGTTAGACACCCTGTCAGACTATGCTGGGATTATTTATT
ATCCTGAAGATGTCAATCACAGTATTGATTTCCTGTTTTACTGCGACCATCATCACATTCCTCTAGTCTTGTTGGATAAA
TCTCTAGATCTTTTTCAGTTTCCGTCTGTTGTAGCGGATAATAAAGGCGGTGCCTGTCAATTGACTCAGCACTTGATTGA
GCAAGGCTGTGACCAGATTAGTTTTGTGGCAACAGGCTCTTTTGGAGAAGTATCATCCGTTAGAGACCGTTATTTGGGTT
ACTTAGCGGCAATGGCAGAATCGTCTCTAAAATCCCATTATTTTCCTAAGACAGAGACTGAAACAACAGATGCTTATTTG
GACCGTTTGGTGAAAACCTTATCGGAGACGACAGCCACTAAAAGGGGGCTTGTCGTGGAAAACGATTGGTTGGCTATTCA
GCTGATTCAAAAAATCACACAGGTAGGCTTATCTATTCCTGATCAAGTCGCTATTGTAGGCTTTGATAATAGTCAAGCCT
CCCGTTTGTTGAGTCCCAAATTAAGCACAGCAGCTCAAGATTTTTACCAAATGGGGCAAGAAGCAGCTAAAGTCTTGTTG
CAGATTATTCATGAGCCAGACCAAGCAGTGGTGTCTTGCCAGTTACCTGTTCAAGTATTTATCAGAGAAAGTAGTCACTA
A

Upstream 100 bases:

>100_bases
TTCGGTTTCATTATAAATGATAAGTTAAACTTTGTCTATAGGTTTTTGAAAAGGTTTACAACTCTTTTTTGACATGTTAT
ACTGATAACAGGAGTAAAGA

Downstream 100 bases:

>100_bases
AAAAGACGTTACTAGCATGAGCTGGTTAGCTCAGGTAAAGGAGACCAGAAATGACCATTTATCACGCCTTAAAGGATTAT
CAAGAAGTCATGACAAGAGG

Product: putative transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 346; Mature: 345

Protein sequence:

>346_residues
MTKLLYKKIYHFIKEQIASGRLQIGDRLPTEKELSEQFSVSRITSKRALVELEQEGLITRSRGKGSFVAKKQVTSPEANK
DLLLILPFASDYELGDYAKGIMTSIAETGYRLMVQLASTVRLDTLSDYAGIIYYPEDVNHSIDFLFYCDHHHIPLVLLDK
SLDLFQFPSVVADNKGGACQLTQHLIEQGCDQISFVATGSFGEVSSVRDRYLGYLAAMAESSLKSHYFPKTETETTDAYL
DRLVKTLSETTATKRGLVVENDWLAIQLIQKITQVGLSIPDQVAIVGFDNSQASRLLSPKLSTAAQDFYQMGQEAAKVLL
QIIHEPDQAVVSCQLPVQVFIRESSH

Sequences:

>Translated_346_residues
MTKLLYKKIYHFIKEQIASGRLQIGDRLPTEKELSEQFSVSRITSKRALVELEQEGLITRSRGKGSFVAKKQVTSPEANK
DLLLILPFASDYELGDYAKGIMTSIAETGYRLMVQLASTVRLDTLSDYAGIIYYPEDVNHSIDFLFYCDHHHIPLVLLDK
SLDLFQFPSVVADNKGGACQLTQHLIEQGCDQISFVATGSFGEVSSVRDRYLGYLAAMAESSLKSHYFPKTETETTDAYL
DRLVKTLSETTATKRGLVVENDWLAIQLIQKITQVGLSIPDQVAIVGFDNSQASRLLSPKLSTAAQDFYQMGQEAAKVLL
QIIHEPDQAVVSCQLPVQVFIRESSH
>Mature_345_residues
TKLLYKKIYHFIKEQIASGRLQIGDRLPTEKELSEQFSVSRITSKRALVELEQEGLITRSRGKGSFVAKKQVTSPEANKD
LLLILPFASDYELGDYAKGIMTSIAETGYRLMVQLASTVRLDTLSDYAGIIYYPEDVNHSIDFLFYCDHHHIPLVLLDKS
LDLFQFPSVVADNKGGACQLTQHLIEQGCDQISFVATGSFGEVSSVRDRYLGYLAAMAESSLKSHYFPKTETETTDAYLD
RLVKTLSETTATKRGLVVENDWLAIQLIQKITQVGLSIPDQVAIVGFDNSQASRLLSPKLSTAAQDFYQMGQEAAKVLLQ
IIHEPDQAVVSCQLPVQVFIRESSH

Specific function: Transcriptional repressor of the arabinose utilization genes [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786540, Length=218, Percent_Identity=28.4403669724771, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1789202, Length=149, Percent_Identity=26.1744966442953, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1790369, Length=310, Percent_Identity=22.258064516129, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1789068, Length=166, Percent_Identity=28.9156626506024, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI87082252, Length=71, Percent_Identity=40.8450704225352, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR001761
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 38622; Mature: 38490

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKLLYKKIYHFIKEQIASGRLQIGDRLPTEKELSEQFSVSRITSKRALVELEQEGLITR
CCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
SRGKGSFVAKKQVTSPEANKDLLLILPFASDYELGDYAKGIMTSIAETGYRLMVQLASTV
CCCCCCEEEHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLDTLSDYAGIIYYPEDVNHSIDFLFYCDHHHIPLVLLDKSLDLFQFPSVVADNKGGACQ
HHHHHHCCCCEEECCCCCCCCEEEEEEECCCCCEEEEECCCCCHHHCCHHHCCCCCCHHH
LTQHLIEQGCDQISFVATGSFGEVSSVRDRYLGYLAAMAESSLKSHYFPKTETETTDAYL
HHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
DRLVKTLSETTATKRGLVVENDWLAIQLIQKITQVGLSIPDQVAIVGFDNSQASRLLSPK
HHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHCCCH
LSTAAQDFYQMGQEAAKVLLQIIHEPDQAVVSCQLPVQVFIRESSH
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEEECCCC
>Mature Secondary Structure 
TKLLYKKIYHFIKEQIASGRLQIGDRLPTEKELSEQFSVSRITSKRALVELEQEGLITR
CHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
SRGKGSFVAKKQVTSPEANKDLLLILPFASDYELGDYAKGIMTSIAETGYRLMVQLASTV
CCCCCCEEEHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLDTLSDYAGIIYYPEDVNHSIDFLFYCDHHHIPLVLLDKSLDLFQFPSVVADNKGGACQ
HHHHHHCCCCEEECCCCCCCCEEEEEEECCCCCEEEEECCCCCHHHCCHHHCCCCCCHHH
LTQHLIEQGCDQISFVATGSFGEVSSVRDRYLGYLAAMAESSLKSHYFPKTETETTDAYL
HHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
DRLVKTLSETTATKRGLVVENDWLAIQLIQKITQVGLSIPDQVAIVGFDNSQASRLLSPK
HHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHCCCH
LSTAAQDFYQMGQEAAKVLLQIIHEPDQAVVSCQLPVQVFIRESSH
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA