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The map label for this gene is ytcP [H]

Identifier: 15675479

GI number: 15675479

Start: 1312436

End: 1313362

Strand: Reverse

Name: ytcP [H]

Synonym: SPy_1593

Alternate gene names: 15675479

Gene position: 1313362-1312436 (Counterclockwise)

Preceding gene: 15675480

Following gene: 15675478

Centisome position: 70.9

GC content: 39.81

Gene sequence:

>927_bases
ATGGAGAAAAAGAAAAAAGTCGAAAAGGTTAATGTTAGAACCTTTGATCGAAAAACCAATGCTATCTTTAATATTCTGAT
TGGTCTGTTTGCCATCTCTTGTATCATTCCTTTTATCTTCGTGATTATTATTTCCTTCACTGATGAAAGTTACTTGATTA
ATCATGGGTATAGTTTTTTTCCAGATGTCTGGTCAACTAAGGCTTACCAGTATATTTTTCAAGGAGCCATGTCCCATAGA
ATCATGAGGTCATTTGGGATATCCGTGTTTATTACAGTGGTGGGAACCTTTATTAACACGACCATGACATCAACCTATGC
TTATGCGATTTCAAGACCTTATTTCCCATACAGACGTTTTTTTACTGTTTATGCACTTATCACCATGCTCTTTGCACCAG
GGATGGTTGCTAATTACTTGGTGGTCAGCAATCTCCTTCATTTGAAGGATACGGTTTGGGCCTTGATTTTACCAATGGCT
CTGGGCCCATTTGGCATCTTGGTCATGAGAACGTTCTTTAAAAAGACAGTTCCAGATAGCATTATTGAGTCGGCTCGTAT
GGATGGGGCTAGTGAATGGATGATTTTTATGAAAATTGTCTTACCATTAGCTGTTCCAGGGATTGCCACCATCAGTTTAT
TTTCTGCCTTAACTTATTGGAATGATTGGTTTAACGCCTTGCTTTATGTGCAAAGTGAGAATCTTTACCCAATGCAGTAC
TTACTGATGAAAATTCAGAGCAACCTACAGGCCTTGGCACAAAATGCTGGCATGAGTGCACAAATGGCAGATAGCTTAGC
ATCGCTGCCAAAAGAATCAGTTCGTATGGCTATCGTGGTTATTGCAACCTTGCCGATTGCCTTGACTTACCCATTCTTCC
AAAAGTACTTTGTCGGTGGTTTGACCATTGGTGGGGTGAAGGAATAG

Upstream 100 bases:

>100_bases
TAGCCTTTATCAGTCAGTAGTTGGGACCAGCATCTTGTTAGTCACCAATGCGATTGTTCGTCGCATGGACCCTGATGCAG
CCTTGTTTTAGGAGGAAAAC

Downstream 100 bases:

>100_bases
GACTTAAGGAACTGGTCACAAGACCAGATTTTATCTAATCATTAGTAACAAAAGAAAACATTTTTTAGGAGGCTTCACTT
ATGAAAAAATGGCAAAAAAT

Product: putative sugar-binding transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MEKKKKVEKVNVRTFDRKTNAIFNILIGLFAISCIIPFIFVIIISFTDESYLINHGYSFFPDVWSTKAYQYIFQGAMSHR
IMRSFGISVFITVVGTFINTTMTSTYAYAISRPYFPYRRFFTVYALITMLFAPGMVANYLVVSNLLHLKDTVWALILPMA
LGPFGILVMRTFFKKTVPDSIIESARMDGASEWMIFMKIVLPLAVPGIATISLFSALTYWNDWFNALLYVQSENLYPMQY
LLMKIQSNLQALAQNAGMSAQMADSLASLPKESVRMAIVVIATLPIALTYPFFQKYFVGGLTIGGVKE

Sequences:

>Translated_308_residues
MEKKKKVEKVNVRTFDRKTNAIFNILIGLFAISCIIPFIFVIIISFTDESYLINHGYSFFPDVWSTKAYQYIFQGAMSHR
IMRSFGISVFITVVGTFINTTMTSTYAYAISRPYFPYRRFFTVYALITMLFAPGMVANYLVVSNLLHLKDTVWALILPMA
LGPFGILVMRTFFKKTVPDSIIESARMDGASEWMIFMKIVLPLAVPGIATISLFSALTYWNDWFNALLYVQSENLYPMQY
LLMKIQSNLQALAQNAGMSAQMADSLASLPKESVRMAIVVIATLPIALTYPFFQKYFVGGLTIGGVKE
>Mature_308_residues
MEKKKKVEKVNVRTFDRKTNAIFNILIGLFAISCIIPFIFVIIISFTDESYLINHGYSFFPDVWSTKAYQYIFQGAMSHR
IMRSFGISVFITVVGTFINTTMTSTYAYAISRPYFPYRRFFTVYALITMLFAPGMVANYLVVSNLLHLKDTVWALILPMA
LGPFGILVMRTFFKKTVPDSIIESARMDGASEWMIFMKIVLPLAVPGIATISLFSALTYWNDWFNALLYVQSENLYPMQY
LLMKIQSNLQALAQNAGMSAQMADSLASLPKESVRMAIVVIATLPIALTYPFFQKYFVGGLTIGGVKE

Specific function: Probably part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=306, Percent_Identity=26.797385620915, Blast_Score=75, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34885; Mature: 34885

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKKKKVEKVNVRTFDRKTNAIFNILIGLFAISCIIPFIFVIIISFTDESYLINHGYSFF
CCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCC
PDVWSTKAYQYIFQGAMSHRIMRSFGISVFITVVGTFINTTMTSTYAYAISRPYFPYRRF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
FTVYALITMLFAPGMVANYLVVSNLLHLKDTVWALILPMALGPFGILVMRTFFKKTVPDS
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
IIESARMDGASEWMIFMKIVLPLAVPGIATISLFSALTYWNDWFNALLYVQSENLYPMQY
HHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHH
LLMKIQSNLQALAQNAGMSAQMADSLASLPKESVRMAIVVIATLPIALTYPFFQKYFVGG
HHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LTIGGVKE
CCCCCCCC
>Mature Secondary Structure
MEKKKKVEKVNVRTFDRKTNAIFNILIGLFAISCIIPFIFVIIISFTDESYLINHGYSFF
CCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCC
PDVWSTKAYQYIFQGAMSHRIMRSFGISVFITVVGTFINTTMTSTYAYAISRPYFPYRRF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
FTVYALITMLFAPGMVANYLVVSNLLHLKDTVWALILPMALGPFGILVMRTFFKKTVPDS
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
IIESARMDGASEWMIFMKIVLPLAVPGIATISLFSALTYWNDWFNALLYVQSENLYPMQY
HHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHH
LLMKIQSNLQALAQNAGMSAQMADSLASLPKESVRMAIVVIATLPIALTYPFFQKYFVGG
HHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LTIGGVKE
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377; 8763940 [H]