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The map label for this gene is ylmH [H]

Identifier: 15675416

GI number: 15675416

Start: 1246001

End: 1246792

Strand: Reverse

Name: ylmH [H]

Synonym: SPy_1515

Alternate gene names: 15675416

Gene position: 1246792-1246001 (Counterclockwise)

Preceding gene: 15675417

Following gene: 15675415

Centisome position: 67.31

GC content: 31.19

Gene sequence:

>792_bases
ATGGTTAGTCATAGTAAGATTTATCAGCATTTTCACCAAGAAGAATATCCTTTTATTGATAGAATGTCTGATATGATTAA
TAGAGTTGAAGATTACTATCTTTTAGAAGTTACTGAGTTTTTAAATCCTAGAGAAGTGATGATTTTAAAAAGTTTGATTG
CTTTAACAGATCTAAAAATGTTCGTATCAACAGATTACTACCCAAGCGAATATGGTCGTGTCATTATTGCACCTGGTTAC
TATGACTTAGAACAAAGTGATTTTCAAATAGCTTTAGTAGAGATAAGTTATCAGGCAAAGTTTAATCAGTTGACACATAG
TCAAATTTTAGGAACTTTAATTAATGAATTAGGAGTAAAGCGAAATTTATTTGGAGATGTTTTTGTTGAAATGGGATATG
CCCAGCTCATGATTAAGCGGGAGTTATTGGATTATTTTTTAGGAACAATTACTAAAATAGCTAAAACTAGTGTGAAATTA
AGAGAAGTTAACTTTGATCAGTTAATTAGGTCTATTGATAACAGCCAGACCCTGGATATTCTAGTTTCTAGTTTTCGATT
AGATGGTGTAGTTGCTACTATCTTAAAAAAATCTCGAACGCAAGTTATAGCATTAATTGAAGCAAATAAGATTAAGGTAA
ACTATCGAGTTGCTAATAAAGCTTCAGATAATCTAGTCATAGGGGATATGGTGAGTATCAGAGGTCACGGGCGTTTTACT
CTTTTAGCAGATAATGGAGTGACCAAACATGGCAAACAAAAAATAACACTAAGTAAAATGATACATAAATAA

Upstream 100 bases:

>100_bases
GAGCATTTAATTTACAATTTGCCGGTCTTGACTTCACTATTTTTGTCGTCATTATTAGTTTGAATTTTTTAGCTCAAGTT
TTGGTCCGTGTGTTTATTTA

Downstream 100 bases:

>100_bases
GGAGATACAATGGCACTTACAACGCTAGAAATTAAAGATAAAACTTTTAAGACAAAATTCCGAGGATACTGTGAAGAAGA
AGTCAATGAATTCCTTGATA

Product: RNA binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MVSHSKIYQHFHQEEYPFIDRMSDMINRVEDYYLLEVTEFLNPREVMILKSLIALTDLKMFVSTDYYPSEYGRVIIAPGY
YDLEQSDFQIALVEISYQAKFNQLTHSQILGTLINELGVKRNLFGDVFVEMGYAQLMIKRELLDYFLGTITKIAKTSVKL
REVNFDQLIRSIDNSQTLDILVSSFRLDGVVATILKKSRTQVIALIEANKIKVNYRVANKASDNLVIGDMVSIRGHGRFT
LLADNGVTKHGKQKITLSKMIHK

Sequences:

>Translated_263_residues
MVSHSKIYQHFHQEEYPFIDRMSDMINRVEDYYLLEVTEFLNPREVMILKSLIALTDLKMFVSTDYYPSEYGRVIIAPGY
YDLEQSDFQIALVEISYQAKFNQLTHSQILGTLINELGVKRNLFGDVFVEMGYAQLMIKRELLDYFLGTITKIAKTSVKL
REVNFDQLIRSIDNSQTLDILVSSFRLDGVVATILKKSRTQVIALIEANKIKVNYRVANKASDNLVIGDMVSIRGHGRFT
LLADNGVTKHGKQKITLSKMIHK
>Mature_263_residues
MVSHSKIYQHFHQEEYPFIDRMSDMINRVEDYYLLEVTEFLNPREVMILKSLIALTDLKMFVSTDYYPSEYGRVIIAPGY
YDLEQSDFQIALVEISYQAKFNQLTHSQILGTLINELGVKRNLFGDVFVEMGYAQLMIKRELLDYFLGTITKIAKTSVKL
REVNFDQLIRSIDNSQTLDILVSSFRLDGVVATILKKSRTQVIALIEANKIKVNYRVANKASDNLVIGDMVSIRGHGRFT
LLADNGVTKHGKQKITLSKMIHK

Specific function: Unknown

COG id: COG2302

COG function: function code S; Uncharacterized conserved protein, contains S4-like domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 30227; Mature: 30227

Theoretical pI: Translated: 9.02; Mature: 9.02

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSHSKIYQHFHQEEYPFIDRMSDMINRVEDYYLLEVTEFLNPREVMILKSLIALTDLKM
CCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHEEEHHHHCCCHHHHHHHHHHHHHHHHH
FVSTDYYPSEYGRVIIAPGYYDLEQSDFQIALVEISYQAKFNQLTHSQILGTLINELGVK
HHCCCCCCCCCCEEEEECCEECCCCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHCCH
RNLFGDVFVEMGYAQLMIKRELLDYFLGTITKIAKTSVKLREVNFDQLIRSIDNSQTLDI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHCCCHHHHH
LVSSFRLDGVVATILKKSRTQVIALIEANKIKVNYRVANKASDNLVIGDMVSIRGHGRFT
HHHHHHHHHHHHHHHHHCCCEEEEEEECCEEEEEEEEECCCCCCEEEECEEEECCCCEEE
LLADNGVTKHGKQKITLSKMIHK
EEECCCCCCCCCCEEHHHHHHCC
>Mature Secondary Structure
MVSHSKIYQHFHQEEYPFIDRMSDMINRVEDYYLLEVTEFLNPREVMILKSLIALTDLKM
CCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHEEEHHHHCCCHHHHHHHHHHHHHHHHH
FVSTDYYPSEYGRVIIAPGYYDLEQSDFQIALVEISYQAKFNQLTHSQILGTLINELGVK
HHCCCCCCCCCCEEEEECCEECCCCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHCCH
RNLFGDVFVEMGYAQLMIKRELLDYFLGTITKIAKTSVKLREVNFDQLIRSIDNSQTLDI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHCCCHHHHH
LVSSFRLDGVVATILKKSRTQVIALIEANKIKVNYRVANKASDNLVIGDMVSIRGHGRFT
HHHHHHHHHHHHHHHHHCCCEEEEEEECCEEEEEEEEECCCCCCEEEECEEEECCCCEEE
LLADNGVTKHGKQKITLSKMIHK
EEECCCCCCCCCCEEHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9045828; 9384377 [H]