Definition | Streptococcus pyogenes M1 GAS chromosome, complete genome. |
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Accession | NC_002737 |
Length | 1,852,441 |
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The map label for this gene is phr [H]
Identifier: 15675407
GI number: 15675407
Start: 1235043
End: 1236452
Strand: Reverse
Name: phr [H]
Synonym: SPy_1505
Alternate gene names: 15675407
Gene position: 1236452-1235043 (Counterclockwise)
Preceding gene: 15675408
Following gene: 15675406
Centisome position: 66.75
GC content: 37.23
Gene sequence:
>1410_bases ATGGTTTCAGTGATGTGGTTTCGTAGAGATTTAAGGATTGATGATCAAAAAGCTTTAGCTCATGCTATTGCTAGTCAATC ACCAACCTTATGTGTGTTTCAATTTAACAAGGAGCAATTAAATCTGCTACATAGTCGGAATCAATCTAGTTTTATTACTA GCGTTTTGGCTTTTAGAAAGTTATTAAAATGTGAAGGTATTGACTTATATCTAATGTATGGAGACTTAATGACCTGTTTT GAGCAATTATTGACACAATTAAAAGACTGGACAGATGTGTATTTTAACTATGATGAATCTGGATATGGTCGTTTACGTGA TCAAAAAGCAGCACAATTTTTCAAAAAAAATGGGATTGCTGTTCATACCTACCAAGATCACTATTTACATGGTAGTCAAG AGATCATTAACCAATCAGGTCAGCCTTATAAAGTTTTTACGCCCTACTATAGGATTTGGCAAAATTATCCGAAAGAGACT CCTATTAAAGTAGAACTATCGCAAGGCAGGTGGTTAAATCTTGAGACACCAGATGATGTTTTAAGGACTGTTGAGAGTTT TAAAGATGAAAAATATCAGGATGTTGCAACTTTTGATGAAGCGTCAAAACAACTAAATCGATTTATTCAAGACCAATTAG CAGCTTATCACGCTAATCGAGATTTTCCAGCGCAGCTAGGGACGAGTCGGTTGTCTCCTTTTTTAAGAATAGGAGCTATT GGCATTCGCACGGTATATCACGCTGTGCGTCAAGCACCAAATAGTCTAGGGCAAGCTACTTTTTTAAAAGAATTAGCTTG GAGAGACTTTTACAATATGGTCTATGTGGCTTATCCTGATCAGAAAACTCAGCCTATCCAAAAAGCCTTTTCTCAAATCG AATGGGTTAATAATCCTGACTGGTTTCAGTTGTGGAAAGAAGGTAAAACGGGTTACCCTATTGTCGATGCTGCAATGCTT CAGTTACAAAAGACAGGATGGATGCATAATCGTTTACGAATGATAGTAGCTTCTTTTTTAACTAAAGATCTTTTATGTGA TTGGCGTTTAGGAGAGCAGTATTTTCAACAACAACTAATTGATTATGATGCTGCCAGTAATATCGGAGGATGGCAGTGGG CTGCTTCCACTGGAACAGATGCTGTTCCTTATTTTAGAATATTTAATCCTGTTACTCAAGGTAAGCGCTTTGATCCTAAA GGCGAGTTTATTAAAGCGTATTTGCCTCAACTAGAACACGTTCCAGAGAAGTATCTCCACGAACCGTGGAAGATGCCAAA AAACCTTCAAGAGAGTGTGTCCTGTATTATTGGCACAGACTATCCTCAACCAATTGTCGATCATGCTAAACAACGTGAAC AAGCTATTGCAAAGTATGAGTGGGCAAAAGAAAAAGCAAAAATAGAATGA
Upstream 100 bases:
>100_bases CTTTTATAATTTGCTAAGGCATTTTATAGGAGATTACTTTTCTTTTTGTTAAAATAAAAAGAAATAGTTGCATTATTTGC ATAGAAGAAAGGGATCTGTT
Downstream 100 bases:
>100_bases CTGTTCTCATTATAAGAGTTTAAACAAAAAGTTATCATGAATTAAGATTATTTAATTTAAAAAATAAGTTGACTTTATTT AGATTATTTGATACTATTCA
Product: putative deoxyribodipyrimidine photolyase
Products: NA
Alternate protein names: DNA photolyase; Photoreactivating enzyme [H]
Number of amino acids: Translated: 469; Mature: 469
Protein sequence:
>469_residues MVSVMWFRRDLRIDDQKALAHAIASQSPTLCVFQFNKEQLNLLHSRNQSSFITSVLAFRKLLKCEGIDLYLMYGDLMTCF EQLLTQLKDWTDVYFNYDESGYGRLRDQKAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKET PIKVELSQGRWLNLETPDDVLRTVESFKDEKYQDVATFDEASKQLNRFIQDQLAAYHANRDFPAQLGTSRLSPFLRIGAI GIRTVYHAVRQAPNSLGQATFLKELAWRDFYNMVYVAYPDQKTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAML QLQKTGWMHNRLRMIVASFLTKDLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFDPK GEFIKAYLPQLEHVPEKYLHEPWKMPKNLQESVSCIIGTDYPQPIVDHAKQREQAIAKYEWAKEKAKIE
Sequences:
>Translated_469_residues MVSVMWFRRDLRIDDQKALAHAIASQSPTLCVFQFNKEQLNLLHSRNQSSFITSVLAFRKLLKCEGIDLYLMYGDLMTCF EQLLTQLKDWTDVYFNYDESGYGRLRDQKAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKET PIKVELSQGRWLNLETPDDVLRTVESFKDEKYQDVATFDEASKQLNRFIQDQLAAYHANRDFPAQLGTSRLSPFLRIGAI GIRTVYHAVRQAPNSLGQATFLKELAWRDFYNMVYVAYPDQKTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAML QLQKTGWMHNRLRMIVASFLTKDLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFDPK GEFIKAYLPQLEHVPEKYLHEPWKMPKNLQESVSCIIGTDYPQPIVDHAKQREQAIAKYEWAKEKAKIE >Mature_469_residues MVSVMWFRRDLRIDDQKALAHAIASQSPTLCVFQFNKEQLNLLHSRNQSSFITSVLAFRKLLKCEGIDLYLMYGDLMTCF EQLLTQLKDWTDVYFNYDESGYGRLRDQKAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKET PIKVELSQGRWLNLETPDDVLRTVESFKDEKYQDVATFDEASKQLNRFIQDQLAAYHANRDFPAQLGTSRLSPFLRIGAI GIRTVYHAVRQAPNSLGQATFLKELAWRDFYNMVYVAYPDQKTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAML QLQKTGWMHNRLRMIVASFLTKDLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFDPK GEFIKAYLPQLEHVPEKYLHEPWKMPKNLQESVSCIIGTDYPQPIVDHAKQREQAIAKYEWAKEKAKIE
Specific function: Involved in repair of UV radiation-induced DNA damage. Catalyzes the light-dependent monomerization (300-600 nm) of cyclobutyl pyrimidine dimers (in cis-syn configuration), which are formed between adjacent bases on the same DNA strand upon exposure to ul
COG id: COG0415
COG function: function code L; Deoxyribodipyrimidine photolyase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 DNA photolyase domain [H]
Homologues:
Organism=Homo sapiens, GI188536100, Length=495, Percent_Identity=29.0909090909091, Blast_Score=203, Evalue=3e-52, Organism=Homo sapiens, GI4758072, Length=502, Percent_Identity=29.4820717131474, Blast_Score=195, Evalue=7e-50, Organism=Homo sapiens, GI188536103, Length=419, Percent_Identity=29.5942720763723, Blast_Score=189, Evalue=6e-48, Organism=Escherichia coli, GI1786926, Length=477, Percent_Identity=38.9937106918239, Blast_Score=303, Evalue=2e-83, Organism=Saccharomyces cerevisiae, GI6324962, Length=363, Percent_Identity=35.2617079889807, Blast_Score=197, Evalue=2e-51, Organism=Drosophila melanogaster, GI17137248, Length=491, Percent_Identity=27.9022403258656, Blast_Score=189, Evalue=4e-48, Organism=Drosophila melanogaster, GI24585455, Length=491, Percent_Identity=27.9022403258656, Blast_Score=189, Evalue=4e-48, Organism=Drosophila melanogaster, GI24648152, Length=232, Percent_Identity=33.6206896551724, Blast_Score=145, Evalue=6e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002081 - InterPro: IPR018394 - InterPro: IPR006050 - InterPro: IPR005101 - InterPro: IPR014729 [H]
Pfam domain/function: PF00875 DNA_photolyase; PF03441 FAD_binding_7 [H]
EC number: =4.1.99.3 [H]
Molecular weight: Translated: 54893; Mature: 54893
Theoretical pI: Translated: 8.17; Mature: 8.17
Prosite motif: PS00691 DNA_PHOTOLYASES_1_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVSVMWFRRDLRIDDQKALAHAIASQSPTLCVFQFNKEQLNLLHSRNQSSFITSVLAFRK CCEEEEEHHCCCCCHHHHHHHHHHCCCCCEEEEEECHHHHHHHHCCCHHHHHHHHHHHHH LLKCEGIDLYLMYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRLRDQKAAQFFKKNGIA HHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCE VHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKETPIKVELSQGRWLNLETPDDV EEEEHHHHCCCCHHHHCCCCCCEEEECHHHHHHHCCCCCCCEEEEECCCCEECCCCHHHH LRTVESFKDEKYQDVATFDEASKQLNRFIQDQLAAYHANRDFPAQLGTSRLSPFLRIGAI HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHCHHHHHHHH GIRTVYHAVRQAPNSLGQATFLKELAWRDFYNMVYVAYPDQKTQPIQKAFSQIEWVNNPD HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCHHHHHHHHHCCCCCCH WFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLLCDWRLGEQYFQQQLI HHHHHHCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH DYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFDPKGEFIKAYLPQLEHVPEKYLH HHHCCCCCCCCEEECCCCCCCCCHHHHHCHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHC EPWKMPKNLQESVSCIIGTDYPQPIVDHAKQREQAIAKYEWAKEKAKIE CHHCCCCCHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MVSVMWFRRDLRIDDQKALAHAIASQSPTLCVFQFNKEQLNLLHSRNQSSFITSVLAFRK CCEEEEEHHCCCCCHHHHHHHHHHCCCCCEEEEEECHHHHHHHHCCCHHHHHHHHHHHHH LLKCEGIDLYLMYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRLRDQKAAQFFKKNGIA HHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCE VHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKETPIKVELSQGRWLNLETPDDV EEEEHHHHCCCCHHHHCCCCCCEEEECHHHHHHHCCCCCCCEEEEECCCCEECCCCHHHH LRTVESFKDEKYQDVATFDEASKQLNRFIQDQLAAYHANRDFPAQLGTSRLSPFLRIGAI HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHCHHHHHHHH GIRTVYHAVRQAPNSLGQATFLKELAWRDFYNMVYVAYPDQKTQPIQKAFSQIEWVNNPD HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCHHHHHHHHHCCCCCCH WFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLLCDWRLGEQYFQQQLI HHHHHHCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH DYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFDPKGEFIKAYLPQLEHVPEKYLH HHHCCCCCCCCEEECCCCCCCCCHHHHHCHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHC EPWKMPKNLQESVSCIIGTDYPQPIVDHAKQREQAIAKYEWAKEKAKIE CHHCCCCCHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7678007 [H]