Definition | Streptococcus pyogenes M1 GAS chromosome, complete genome. |
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Accession | NC_002737 |
Length | 1,852,441 |
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The map label for this gene is ytzG [H]
Identifier: 15675319
GI number: 15675319
Start: 1159756
End: 1160340
Strand: Reverse
Name: ytzG [H]
Synonym: SPy_1398
Alternate gene names: 15675319
Gene position: 1160340-1159756 (Counterclockwise)
Preceding gene: 15675320
Following gene: 15675318
Centisome position: 62.64
GC content: 41.03
Gene sequence:
>585_bases ATGCGTTTAGATAAATTATTAGAAGGTACAAAAGTTGGCTCTAGAAGTCAAGTGAAGAAACTGATTAAGGCTCAAGGGGT TTGGGTTGATCACATGCCTGCCAGAAATGGTCGACAAAATGTTGATCCTGGCTTGCAACTGATTGAGGTGACTGGACAGC GAGTGACGCATCCTAAACATTCTTACATTATCCTCAACAAGCCATCAGGGGTGGTCTCAGCTAAGAAAGATACTAACTAT TTAACCGTTATTGATCAGCTTGCTGAAGAAGATAAAAGTCCAGACTTGTATCCTGTTGGCAGATTGGATAGAGATACCGA AGGGTTGGTTTTACTCACTGATAATGGTCCCCTAGGGTTTCGGATGTTGCACCCTAGTCATCATGTTTCTAAAACGTATC TTGTAACCGTTAATGGCTTGTTAGCAGAAGATGCCTCAGATTTTTTTGCAGCTGGTATTTGTTTCCCAACAGGTGAACAA TGCCAACCAGCTCAATTGACTATTCTTAAAGCCGATACAGACCAGTCACAGGCTAGTTTGACCATTTCAGAAGGAAAATT TCACCAAGTGAAAAAATGTTTTTGA
Upstream 100 bases:
>100_bases CTTGTAAGAACAAAAATGAGGAGATAGTCAACTTCATTTAAGAAGAAGTCTTGTAACTTCTATTTCTTTTGCAAGGGTAA ATTTATGTTACACTACTAAT
Downstream 100 bases:
>100_bases CCTATGGTTTGAAAGTGACCTCTCTGAAACGGACGCACTTTGCAGGACTGGAACTCGGTCATTTAGCCAGCGGAGAATAT CGTTATCTAACAGCGTCAGA
Product: putative 16S pseudouridylate synthetase
Products: pseudouridine 5'-phosphate; H2O [C]
Alternate protein names: RNA pseudouridylate synthase; RNA-uridine isomerase [H]
Number of amino acids: Translated: 194; Mature: 194
Protein sequence:
>194_residues MRLDKLLEGTKVGSRSQVKKLIKAQGVWVDHMPARNGRQNVDPGLQLIEVTGQRVTHPKHSYIILNKPSGVVSAKKDTNY LTVIDQLAEEDKSPDLYPVGRLDRDTEGLVLLTDNGPLGFRMLHPSHHVSKTYLVTVNGLLAEDASDFFAAGICFPTGEQ CQPAQLTILKADTDQSQASLTISEGKFHQVKKCF
Sequences:
>Translated_194_residues MRLDKLLEGTKVGSRSQVKKLIKAQGVWVDHMPARNGRQNVDPGLQLIEVTGQRVTHPKHSYIILNKPSGVVSAKKDTNY LTVIDQLAEEDKSPDLYPVGRLDRDTEGLVLLTDNGPLGFRMLHPSHHVSKTYLVTVNGLLAEDASDFFAAGICFPTGEQ CQPAQLTILKADTDQSQASLTISEGKFHQVKKCF >Mature_194_residues MRLDKLLEGTKVGSRSQVKKLIKAQGVWVDHMPARNGRQNVDPGLQLIEVTGQRVTHPKHSYIILNKPSGVVSAKKDTNY LTVIDQLAEEDKSPDLYPVGRLDRDTEGLVLLTDNGPLGFRMLHPSHHVSKTYLVTVNGLLAEDASDFFAAGICFPTGEQ CQPAQLTILKADTDQSQASLTISEGKFHQVKKCF
Specific function: Responsible For Synthesis Of Pseudouridine From Uracil-516 In 16s Ribosomal RNA. [C]
COG id: COG1187
COG function: function code J; 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 S4 RNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1788510, Length=202, Percent_Identity=36.1386138613861, Blast_Score=105, Evalue=2e-24, Organism=Escherichia coli, GI1790453, Length=157, Percent_Identity=31.8471337579618, Blast_Score=76, Evalue=1e-15, Organism=Escherichia coli, GI1787524, Length=203, Percent_Identity=29.064039408867, Blast_Score=67, Evalue=5e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020103 - InterPro: IPR006145 - InterPro: IPR000748 - InterPro: IPR018496 - InterPro: IPR002942 [H]
Pfam domain/function: PF00849 PseudoU_synth_2; PF01479 S4 [H]
EC number: 4.2.1.70 [C]
Molecular weight: Translated: 21391; Mature: 21391
Theoretical pI: Translated: 8.10; Mature: 8.10
Prosite motif: PS50889 S4 ; PS01149 PSI_RSU
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLDKLLEGTKVGSRSQVKKLIKAQGVWVDHMPARNGRQNVDPGLQLIEVTGQRVTHPKH CCHHHHHCCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCC SYIILNKPSGVVSAKKDTNYLTVIDQLAEEDKSPDLYPVGRLDRDTEGLVLLTDNGPLGF CEEEEECCCCCEEECCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCEEEEECCCCEEE RMLHPSHHVSKTYLVTVNGLLAEDASDFFAAGICFPTGEQCQPAQLTILKADTDQSQASL EEECCCCCCCEEEEEEECCEECCCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCEEE TISEGKFHQVKKCF EECCCCHHHHHHCC >Mature Secondary Structure MRLDKLLEGTKVGSRSQVKKLIKAQGVWVDHMPARNGRQNVDPGLQLIEVTGQRVTHPKH CCHHHHHCCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCC SYIILNKPSGVVSAKKDTNYLTVIDQLAEEDKSPDLYPVGRLDRDTEGLVLLTDNGPLGF CEEEEECCCCCEEECCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCEEEEECCCCEEE RMLHPSHHVSKTYLVTVNGLLAEDASDFFAAGICFPTGEQCQPAQLTILKADTDQSQASL EEECCCCCCCEEEEEEECCEECCCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCEEE TISEGKFHQVKKCF EECCCCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: uracil; D-ribose phosphate [C]
Specific reaction: uracil + D-ribose phosphate = pseudouridine 5'-phosphate + H2O [C]
General reaction: addition of H2O; elimination of H2O; C-O bond cleavage [C]
Inhibitor: 1-(Tetrahydro-2-furanyl)-5-fluorouracil; 5-fluorouracil [C]
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]