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The map label for this gene is opuCB [H]

Identifier: 15675111

GI number: 15675111

Start: 927833

End: 929365

Strand: Direct

Name: opuCB [H]

Synonym: SPy_1134

Alternate gene names: 15675111

Gene position: 927833-929365 (Clockwise)

Preceding gene: 15675110

Following gene: 15675112

Centisome position: 50.09

GC content: 39.53

Gene sequence:

>1533_bases
ATGAGCATGCCTAGTTTGTTTGTAACTTTCCAAAACCGTTTTAATGAATGGCTGGCGGCTCTGGGGGAACACCTGCAAAT
TTCCCTTTTATCTCTTATGATCGCCTTGCTAATAGGTGTGCCTTTAGCAGCCCTTCTCAGTCGCAGCAAACGTTGGTCAG
ACATTATGTTACAGGTAACAGGTGTTTTTCAAACCATTCCCTCACTGGCTTTGCTTGGTCTTTTCATCCCTTTAATGGGA
ATTGGAACGTTGCCTGCAGTGACAGCTTTAGTTATCTATGCGATTTTTCCGATTTTACAAAACACCATCACAGGATTAAA
TGGTATTGACCCAAGTCTCGTGGAAGCAGGAATAGCTTTTGGGATGACCAAATGGGAGCGATTGAAAACATTTGAGATTC
CAATTGCCATGCCTGTTATTATGTCAGGTGTGCGGACGTCAGCAGTCATGATTATCGGCACAGCTACTTTAGCTTCCTTG
ATAGGAGCCGGTGGACTTGGCTCTTTCATCTTATTAGGGATTGATCGTAATAATGCTAACCTGATTCTGATAGGGGCTAT
TTCTTCAGCTCTGCTAGCTATTATTTTCAATAGTTTGTTACAGTACCTTGAGAAAGCTTCCTTGCGACGGATTATGATTA
GTTTTGGAATTACCTTACTTGCACTGCTAGCATCGTATACTCCTATGGCGCTTAGTCAGTTTTCAAAAGGAAAAGATACA
GTGGTTATTGCCGGTAAATTGGGAGCAGAGCCCGATATTCTGATTAATCTCTATAAGGAATTAATTGAAGACCAATCAGA
TATAAGTGTTGAGTTGAAATCTAATTTTGGGAAAACTAGCTTCTTATATGAAGCCCTTAAATCTGGAGATATTGATATGT
ATCCTGAATTTACAGGAACCATAACATCAAGTCTTTTACGCGACAAACCACCTTTGTCTAATGACCCTAAGCAGGTCTAT
GAGGATGCTAAAAAAGGCATTGCTAAGCAAGATAAACTGACCCTTCTCAAGCCATTTGCTTACCAAAATACGTATGCTGT
TGCTATGCCAGAAAAATTGGCTAAGGAATATCAGATTGAAACCATTTCTGATTTAAAAGCGCATGCTGATACTTTAAAGG
CCGGTTTTACTTTGGAATTTAAGGACAGAGCAGATGGCTATAAGGGAATGCAATCTCAATATGGATTACAGCTATCTGTG
GCGACGATGGAGCCAGCTCTTCGTTATCAAGCAATTCAATCAGGAGATATCCAAGTAACAGATGCTTACTCTACGGATGC
TGAAATTACGAAATACCATTTGAAAGTTTTAAAGGATGATAAACAGTTGTTTCCACCTTATCAGGGAGCTCCTTTGATGA
AAACTTCCTTATTAACAAAACATCCAGAATTAAAAGGCATTCTTAATCAATTAGCGGGAAAAATTACTGAAAAAGAGATG
CAGGACATGAACTACGAGGTATCTGTTAAAGGAGCAGATGCTAATAAGGTCGCTCGAGATTATCTGTTGAAAACAGGCTT
AATCCAGAAATAA

Upstream 100 bases:

>100_bases
GTAGCTATTTTAAATGAGGGAGAAATTGTGCAACTGGATCGCCCAGAAATGATTAAGACCCACCCTGCTAATGCTTTTGT
GGTCAATTTATTTGGAGGTG

Downstream 100 bases:

>100_bases
ACAGAAATGTTGGTCCGTAGGACTGGCATTTTTTCGTCTCTTAAGTTCAAGAAGTAACAATTCATAAACACAAAAACCGA
ACTTTAAAATTAAAAATAGC

Product: putative ABC transporter binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 510; Mature: 509

Protein sequence:

>510_residues
MSMPSLFVTFQNRFNEWLAALGEHLQISLLSLMIALLIGVPLAALLSRSKRWSDIMLQVTGVFQTIPSLALLGLFIPLMG
IGTLPAVTALVIYAIFPILQNTITGLNGIDPSLVEAGIAFGMTKWERLKTFEIPIAMPVIMSGVRTSAVMIIGTATLASL
IGAGGLGSFILLGIDRNNANLILIGAISSALLAIIFNSLLQYLEKASLRRIMISFGITLLALLASYTPMALSQFSKGKDT
VVIAGKLGAEPDILINLYKELIEDQSDISVELKSNFGKTSFLYEALKSGDIDMYPEFTGTITSSLLRDKPPLSNDPKQVY
EDAKKGIAKQDKLTLLKPFAYQNTYAVAMPEKLAKEYQIETISDLKAHADTLKAGFTLEFKDRADGYKGMQSQYGLQLSV
ATMEPALRYQAIQSGDIQVTDAYSTDAEITKYHLKVLKDDKQLFPPYQGAPLMKTSLLTKHPELKGILNQLAGKITEKEM
QDMNYEVSVKGADANKVARDYLLKTGLIQK

Sequences:

>Translated_510_residues
MSMPSLFVTFQNRFNEWLAALGEHLQISLLSLMIALLIGVPLAALLSRSKRWSDIMLQVTGVFQTIPSLALLGLFIPLMG
IGTLPAVTALVIYAIFPILQNTITGLNGIDPSLVEAGIAFGMTKWERLKTFEIPIAMPVIMSGVRTSAVMIIGTATLASL
IGAGGLGSFILLGIDRNNANLILIGAISSALLAIIFNSLLQYLEKASLRRIMISFGITLLALLASYTPMALSQFSKGKDT
VVIAGKLGAEPDILINLYKELIEDQSDISVELKSNFGKTSFLYEALKSGDIDMYPEFTGTITSSLLRDKPPLSNDPKQVY
EDAKKGIAKQDKLTLLKPFAYQNTYAVAMPEKLAKEYQIETISDLKAHADTLKAGFTLEFKDRADGYKGMQSQYGLQLSV
ATMEPALRYQAIQSGDIQVTDAYSTDAEITKYHLKVLKDDKQLFPPYQGAPLMKTSLLTKHPELKGILNQLAGKITEKEM
QDMNYEVSVKGADANKVARDYLLKTGLIQK
>Mature_509_residues
SMPSLFVTFQNRFNEWLAALGEHLQISLLSLMIALLIGVPLAALLSRSKRWSDIMLQVTGVFQTIPSLALLGLFIPLMGI
GTLPAVTALVIYAIFPILQNTITGLNGIDPSLVEAGIAFGMTKWERLKTFEIPIAMPVIMSGVRTSAVMIIGTATLASLI
GAGGLGSFILLGIDRNNANLILIGAISSALLAIIFNSLLQYLEKASLRRIMISFGITLLALLASYTPMALSQFSKGKDTV
VIAGKLGAEPDILINLYKELIEDQSDISVELKSNFGKTSFLYEALKSGDIDMYPEFTGTITSSLLRDKPPLSNDPKQVYE
DAKKGIAKQDKLTLLKPFAYQNTYAVAMPEKLAKEYQIETISDLKAHADTLKAGFTLEFKDRADGYKGMQSQYGLQLSVA
TMEPALRYQAIQSGDIQVTDAYSTDAEITKYHLKVLKDDKQLFPPYQGAPLMKTSLLTKHPELKGILNQLAGKITEKEMQ
DMNYEVSVKGADANKVARDYLLKTGLIQK

Specific function: Involved in a high affinity multicomponent binding- protein-dependent transport system for glycine betaine, carnitine and choline; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1732

COG function: function code M; Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788449, Length=197, Percent_Identity=37.0558375634518, Blast_Score=122, Evalue=5e-29,
Organism=Escherichia coli, GI1788452, Length=280, Percent_Identity=27.8571428571429, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1788451, Length=215, Percent_Identity=33.4883720930233, Blast_Score=109, Evalue=4e-25,
Organism=Escherichia coli, GI1789033, Length=176, Percent_Identity=35.2272727272727, Blast_Score=107, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 55792; Mature: 55661

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMPSLFVTFQNRFNEWLAALGEHLQISLLSLMIALLIGVPLAALLSRSKRWSDIMLQVT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
GVFQTIPSLALLGLFIPLMGIGTLPAVTALVIYAIFPILQNTITGLNGIDPSLVEAGIAF
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
GMTKWERLKTFEIPIAMPVIMSGVRTSAVMIIGTATLASLIGAGGLGSFILLGIDRNNAN
CCHHHHHHEEEECCHHHHHHHHCCCHHHEEEEEHHHHHHHHCCCCCCCEEEEEEECCCCC
LILIGAISSALLAIIFNSLLQYLEKASLRRIMISFGITLLALLASYTPMALSQFSKGKDT
EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCE
VVIAGKLGAEPDILINLYKELIEDQSDISVELKSNFGKTSFLYEALKSGDIDMYPEFTGT
EEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCHHHH
ITSSLLRDKPPLSNDPKQVYEDAKKGIAKQDKLTLLKPFAYQNTYAVAMPEKLAKEYQIE
HHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCHHEECCHHCCCEEEEECCHHHHHHHHHH
TISDLKAHADTLKAGFTLEFKDRADGYKGMQSQYGLQLSVATMEPALRYQAIQSGDIQVT
HHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHCCCEEEEEHHCHHHHHHHHCCCCEEEE
DAYSTDAEITKYHLKVLKDDKQLFPPYQGAPLMKTSLLTKHPELKGILNQLAGKITEKEM
ECCCCCHHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH
QDMNYEVSVKGADANKVARDYLLKTGLIQK
HCCCEEEEEECCCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SMPSLFVTFQNRFNEWLAALGEHLQISLLSLMIALLIGVPLAALLSRSKRWSDIMLQVT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
GVFQTIPSLALLGLFIPLMGIGTLPAVTALVIYAIFPILQNTITGLNGIDPSLVEAGIAF
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
GMTKWERLKTFEIPIAMPVIMSGVRTSAVMIIGTATLASLIGAGGLGSFILLGIDRNNAN
CCHHHHHHEEEECCHHHHHHHHCCCHHHEEEEEHHHHHHHHCCCCCCCEEEEEEECCCCC
LILIGAISSALLAIIFNSLLQYLEKASLRRIMISFGITLLALLASYTPMALSQFSKGKDT
EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCE
VVIAGKLGAEPDILINLYKELIEDQSDISVELKSNFGKTSFLYEALKSGDIDMYPEFTGT
EEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCHHHH
ITSSLLRDKPPLSNDPKQVYEDAKKGIAKQDKLTLLKPFAYQNTYAVAMPEKLAKEYQIE
HHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCHHEECCHHCCCEEEEECCHHHHHHHHHH
TISDLKAHADTLKAGFTLEFKDRADGYKGMQSQYGLQLSVATMEPALRYQAIQSGDIQVT
HHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHCCCEEEEEHHCHHHHHHHHCCCCEEEE
DAYSTDAEITKYHLKVLKDDKQLFPPYQGAPLMKTSLLTKHPELKGILNQLAGKITEKEM
ECCCCCHHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH
QDMNYEVSVKGADANKVARDYLLKTGLIQK
HCCCEEEEEECCCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10216873; 9384377 [H]