Click here to switch to the map view.

The map label for this gene is lys

Identifier: 15675010

GI number: 15675010

Start: 817578

End: 818912

Strand: Direct

Name: lys

Synonym: SPy_1006

Alternate gene names: NA

Gene position: 817578-818912 (Clockwise)

Preceding gene: 15675009

Following gene: 15675011

Centisome position: 44.14

GC content: 38.28

Gene sequence:

>1335_bases
ATGGCTACATATCAGGAATATAAAAGTCGTTCAAATGGCAATGCTTACGATATTGATGGATCGCTTGGTGCGCAATGTTG
GGATGGCTACGCAGACTACTGTAAGTATCTAGGACTGCCATACGCAAACTGTACAAATACAGGATATGCAAAGGATATAT
GGGAACAACGTCACAAAAATGGTATTTTAAACTACTTTGACGAAGTAGAGACTATGCAAGCTGGAGATGTCGCAATTTTT
ATGGTAGTTGCAGGTGTTACACCGTATAGCCATGTGGCTATTTTTGATAGTGATGCAGGTAGTGGATACGGATGGTTTTT
AGGTCAAAACCAGGGTGGAGCAAACGGAGCATATAATTTAGTAAAAATACCATATTCAACGACTTATCCTACTGCATTTA
GACCAAAAGTTTTTAAAAATGCAGTTACTGTTATAGGTAATATAGGACTAAATAAAGGCGATTATTTTATTGATGTATCA
GCTTATCAACAAGCAGACTTAACCGCTACTTGTCAGCAAGCTGGCACTACTAAAACGATTATCAAAGTATCCGAGTCACT
CGCTTGGCTGTCTGATAGGCATCAGCAACAAGCTAATACTAGTGACCCTATTGGTTATTATCACTTTGGACGATTTGGAG
GAGATAGCAACTTAGCGCAACGAGAAGCAGATTTATTTCTGTCCAATTTACCAACCAAAAAAGTCTCTTACTTAGTCATT
GATTATGAAGACTCTGCAAGTGCCGACAAAGAAGCTAACACTAATGCAGTTATTGCGTTTATGGATAAAATTGCAAACGC
TGGATATAAGCCTGTTTATTACAGCTATAAACCATTTACGCTTAATAATATTGATTATCAGCAAATTATCGCTAAGTACC
CAAACAGCATTTGGATAGCTGGTTATCCAGACTACGAAGTACGAACAGAGCCACTTTGGGAGTTCTTCCCTTCAATGGAT
GGTGTGCGCTGGTGGCAGTTCACAAGTGTAGGAGTAGCAGGTGGTTTAGATAAAAATATTGTATTATTAGCAGATGATAG
TAGCAAAGTGGATATACCTAAGATTGACAAACCACAAAGCCAGCTTACTTTTAATCAAAAGCTAGATACTAACACTAAAT
TAGACAACTCGAATGTACCTTACTACGAAGCAACCCTTAGAACAGACTATTATGTAGAGTCTAAGCCAAACGCAAGTAGC
GCTGATAAAGAATTTATCAAGGCAGGAACTCGTGTAAGAGTCTATGAAAAAGTGAATGGATGGTCACGTATTAACGCTTC
TCAGTCTGACCAGTGGGTCGAAGATAAGTATTTATCTAATGCAACACAAGTATAA

Upstream 100 bases:

>100_bases
AATCACACGATTAGCATTAGTTATAGCAATCGCAATACTGTATGTGCCATTATCTGTGGTTGCTTTGATTTTTTATCCAT
TTTTAGATAAGGAGGGATAA

Downstream 100 bases:

>100_bases
AATAGGAGGTAAAGCTCCTTTAGATAAGACAAATGCCCTCGCTTTTGCGGGGGCTGTTTTTGTTATAAAGATTTTAATTG
TTATTTAAGCATTTTCGTTG

Product: putative lysin

Products: NA

Alternate protein names: Muramidase; Phage-Related Endolysin; Phage Lysin; Prophage LambdaSa1 Lysin; Phage-Associated Lysin; Lytic LysA; Phage Endolysin N-Terminal Fragment; Prophage; Phage-Related Lysin; Prophage Lp1 Lysin; Gametolysin

Number of amino acids: Translated: 444; Mature: 443

Protein sequence:

>444_residues
MATYQEYKSRSNGNAYDIDGSLGAQCWDGYADYCKYLGLPYANCTNTGYAKDIWEQRHKNGILNYFDEVETMQAGDVAIF
MVVAGVTPYSHVAIFDSDAGSGYGWFLGQNQGGANGAYNLVKIPYSTTYPTAFRPKVFKNAVTVIGNIGLNKGDYFIDVS
AYQQADLTATCQQAGTTKTIIKVSESLAWLSDRHQQQANTSDPIGYYHFGRFGGDSNLAQREADLFLSNLPTKKVSYLVI
DYEDSASADKEANTNAVIAFMDKIANAGYKPVYYSYKPFTLNNIDYQQIIAKYPNSIWIAGYPDYEVRTEPLWEFFPSMD
GVRWWQFTSVGVAGGLDKNIVLLADDSSKVDIPKIDKPQSQLTFNQKLDTNTKLDNSNVPYYEATLRTDYYVESKPNASS
ADKEFIKAGTRVRVYEKVNGWSRINASQSDQWVEDKYLSNATQV

Sequences:

>Translated_444_residues
MATYQEYKSRSNGNAYDIDGSLGAQCWDGYADYCKYLGLPYANCTNTGYAKDIWEQRHKNGILNYFDEVETMQAGDVAIF
MVVAGVTPYSHVAIFDSDAGSGYGWFLGQNQGGANGAYNLVKIPYSTTYPTAFRPKVFKNAVTVIGNIGLNKGDYFIDVS
AYQQADLTATCQQAGTTKTIIKVSESLAWLSDRHQQQANTSDPIGYYHFGRFGGDSNLAQREADLFLSNLPTKKVSYLVI
DYEDSASADKEANTNAVIAFMDKIANAGYKPVYYSYKPFTLNNIDYQQIIAKYPNSIWIAGYPDYEVRTEPLWEFFPSMD
GVRWWQFTSVGVAGGLDKNIVLLADDSSKVDIPKIDKPQSQLTFNQKLDTNTKLDNSNVPYYEATLRTDYYVESKPNASS
ADKEFIKAGTRVRVYEKVNGWSRINASQSDQWVEDKYLSNATQV
>Mature_443_residues
ATYQEYKSRSNGNAYDIDGSLGAQCWDGYADYCKYLGLPYANCTNTGYAKDIWEQRHKNGILNYFDEVETMQAGDVAIFM
VVAGVTPYSHVAIFDSDAGSGYGWFLGQNQGGANGAYNLVKIPYSTTYPTAFRPKVFKNAVTVIGNIGLNKGDYFIDVSA
YQQADLTATCQQAGTTKTIIKVSESLAWLSDRHQQQANTSDPIGYYHFGRFGGDSNLAQREADLFLSNLPTKKVSYLVID
YEDSASADKEANTNAVIAFMDKIANAGYKPVYYSYKPFTLNNIDYQQIIAKYPNSIWIAGYPDYEVRTEPLWEFFPSMDG
VRWWQFTSVGVAGGLDKNIVLLADDSSKVDIPKIDKPQSQLTFNQKLDTNTKLDNSNVPYYEATLRTDYYVESKPNASSA
DKEFIKAGTRVRVYEKVNGWSRINASQSDQWVEDKYLSNATQV

Specific function: Unknown

COG id: COG3757

COG function: function code M; Lyzozyme M1 (1,4-beta-N-acetylmuramidase)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 49728; Mature: 49597

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: PS50911 CHAP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATYQEYKSRSNGNAYDIDGSLGAQCWDGYADYCKYLGLPYANCTNTGYAKDIWEQRHKN
CCCHHHHHCCCCCCEEEECCCCCCHHHCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCC
GILNYFDEVETMQAGDVAIFMVVAGVTPYSHVAIFDSDAGSGYGWFLGQNQGGANGAYNL
CHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCEEE
VKIPYSTTYPTAFRPKVFKNAVTVIGNIGLNKGDYFIDVSAYQQADLTATCQQAGTTKTI
EECCCCCCCCCCCCCHHHHHHHHEEEECCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEE
IKVSESLAWLSDRHQQQANTSDPIGYYHFGRFGGDSNLAQREADLFLSNLPTKKVSYLVI
EHHHHHHHHHHHHHHHHCCCCCCCCEEEECEECCCCCHHHHHHHHHHHCCCCCCEEEEEE
DYEDSASADKEANTNAVIAFMDKIANAGYKPVYYSYKPFTLNNIDYQQIIAKYPNSIWIA
EECCCCCCCCCCCCCCEEEEHHHHHCCCCCCEEEEECCEEECCCCHHHHHHHCCCCEEEE
GYPDYEVRTEPLWEFFPSMDGVRWWQFTSVGVAGGLDKNIVLLADDSSKVDIPKIDKPQS
ECCCCCCCCCHHHHHHCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCHH
QLTFNQKLDTNTKLDNSNVPYYEATLRTDYYVESKPNASSADKEFIKAGTRVRVYEKVNG
HEEECCCCCCCCCCCCCCCCEEEEEECEEEEEECCCCCCCHHHHHHHCCCEEEEEEECCC
WSRINASQSDQWVEDKYLSNATQV
CEECCCCCCCCHHHHHHHHHCCCC
>Mature Secondary Structure 
ATYQEYKSRSNGNAYDIDGSLGAQCWDGYADYCKYLGLPYANCTNTGYAKDIWEQRHKN
CCHHHHHCCCCCCEEEECCCCCCHHHCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCC
GILNYFDEVETMQAGDVAIFMVVAGVTPYSHVAIFDSDAGSGYGWFLGQNQGGANGAYNL
CHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCEEE
VKIPYSTTYPTAFRPKVFKNAVTVIGNIGLNKGDYFIDVSAYQQADLTATCQQAGTTKTI
EECCCCCCCCCCCCCHHHHHHHHEEEECCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEE
IKVSESLAWLSDRHQQQANTSDPIGYYHFGRFGGDSNLAQREADLFLSNLPTKKVSYLVI
EHHHHHHHHHHHHHHHHCCCCCCCCEEEECEECCCCCHHHHHHHHHHHCCCCCCEEEEEE
DYEDSASADKEANTNAVIAFMDKIANAGYKPVYYSYKPFTLNNIDYQQIIAKYPNSIWIA
EECCCCCCCCCCCCCCEEEEHHHHHCCCCCCEEEEECCEEECCCCHHHHHHHCCCCEEEE
GYPDYEVRTEPLWEFFPSMDGVRWWQFTSVGVAGGLDKNIVLLADDSSKVDIPKIDKPQS
ECCCCCCCCCHHHHHHCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCHH
QLTFNQKLDTNTKLDNSNVPYYEATLRTDYYVESKPNASSADKEFIKAGTRVRVYEKVNG
HEEECCCCCCCCCCCCCCCCEEEEEECEEEEEECCCCCCCHHHHHHHCCCEEEEEEECCC
WSRINASQSDQWVEDKYLSNATQV
CEECCCCCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA