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The map label for this gene is ybeY [C]

Identifier: 15674590

GI number: 15674590

Start: 388315

End: 388812

Strand: Direct

Name: ybeY [C]

Synonym: SPy_0473

Alternate gene names: 15674590

Gene position: 388315-388812 (Clockwise)

Preceding gene: 15674589

Following gene: 15674591

Centisome position: 20.96

GC content: 39.16

Gene sequence:

>498_bases
ATGTATATCGAGATGATTGACGAAACGGGACAAGTTTCGCAAGAGATTATGGAGCAAACACTTGATTTGCTCAATTTTGC
TGCTCAAAAGACGGGCAAAGAAGAAAAAGAAATGTCTGTGACCTTTGTGACCAATGAAAGAAGTCATGAACTCAACTTAG
AATACCGAGATACTGATCGTCCAACAGATGTGATTTCTCTAGAATATAAGCCAGAAACGCCTATTTTATTTAGTCAAGAG
GATTTGGCTGCTGATCCTAGTTTGGCAGAGATGATGGCAGAGTTTGATGCTTATATTGGCGAATTGTTTATTTCTATTGA
CAAGGCGCGTGAGCAGTCCCAAGAATATGGGCACTCTTTTGAGCGTGAAATGGGATTTTTGGCTGTTCATGGATTCTTAC
ATATTAATGGGTATGATCACTACACCCTTGAAGAAGAAAAAGAGATGTTTACCTTACAGGAAGAGATTTTGACTGCTTAT
GGCCTTACACGACAATAA

Upstream 100 bases:

>100_bases
CAAATGCTGATTGAAAGGATAAGGGAAATTATCTGTCAGATAATAATGGGTGCCCAACATACCAAATGAGGTGGGCAGCC
CTTCCCTAACAATTAACCTT

Downstream 100 bases:

>100_bases
TACCACCAAACGGAAATGGAAAAACAGAACCATTACCTCAAGCTTGGAGTTTGCCTTGACAGGGGTTTTCACAGCTTTTA
AGGAAGAACGCAATCTCAGA

Product: putative metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 165

Protein sequence:

>165_residues
MYIEMIDETGQVSQEIMEQTLDLLNFAAQKTGKEEKEMSVTFVTNERSHELNLEYRDTDRPTDVISLEYKPETPILFSQE
DLAADPSLAEMMAEFDAYIGELFISIDKAREQSQEYGHSFEREMGFLAVHGFLHINGYDHYTLEEEKEMFTLQEEILTAY
GLTRQ

Sequences:

>Translated_165_residues
MYIEMIDETGQVSQEIMEQTLDLLNFAAQKTGKEEKEMSVTFVTNERSHELNLEYRDTDRPTDVISLEYKPETPILFSQE
DLAADPSLAEMMAEFDAYIGELFISIDKAREQSQEYGHSFEREMGFLAVHGFLHINGYDHYTLEEEKEMFTLQEEILTAY
GLTRQ
>Mature_165_residues
MYIEMIDETGQVSQEIMEQTLDLLNFAAQKTGKEEKEMSVTFVTNERSHELNLEYRDTDRPTDVISLEYKPETPILFSQE
DLAADPSLAEMMAEFDAYIGELFISIDKAREQSQEYGHSFEREMGFLAVHGFLHINGYDHYTLEEEKEMFTLQEEILTAY
GLTRQ

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity [H]

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family [H]

Homologues:

Organism=Escherichia coli, GI1786880, Length=129, Percent_Identity=34.8837209302326, Blast_Score=67, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036 [H]

Pfam domain/function: PF02130 UPF0054 [H]

EC number: NA

Molecular weight: Translated: 19198; Mature: 19198

Theoretical pI: Translated: 4.01; Mature: 4.01

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYIEMIDETGQVSQEIMEQTLDLLNFAAQKTGKEEKEMSVTFVTNERSHELNLEYRDTDR
CEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEEEEECCCCCEEEEEECCCCC
PTDVISLEYKPETPILFSQEDLAADPSLAEMMAEFDAYIGELFISIDKAREQSQEYGHSF
CCCEEEEEECCCCCEEECCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
EREMGFLAVHGFLHINGYDHYTLEEEKEMFTLQEEILTAYGLTRQ
HHHHCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MYIEMIDETGQVSQEIMEQTLDLLNFAAQKTGKEEKEMSVTFVTNERSHELNLEYRDTDR
CEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEEEEECCCCCEEEEEECCCCC
PTDVISLEYKPETPILFSQEDLAADPSLAEMMAEFDAYIGELFISIDKAREQSQEYGHSF
CCCEEEEEECCCCCEEECCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
EREMGFLAVHGFLHINGYDHYTLEEEKEMFTLQEEILTAYGLTRQ
HHHHCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA