Definition | Streptococcus pyogenes M1 GAS chromosome, complete genome. |
---|---|
Accession | NC_002737 |
Length | 1,852,441 |
Click here to switch to the map view.
The map label for this gene is tdcF [C]
Identifier: 15674355
GI number: 15674355
Start: 132417
End: 132782
Strand: Direct
Name: tdcF [C]
Synonym: SPy_0145
Alternate gene names: 15674355
Gene position: 132417-132782 (Clockwise)
Preceding gene: 15674353
Following gene: 15674356
Centisome position: 7.15
GC content: 41.53
Gene sequence:
>366_bases ATGAAGAGCTACCCAGAACCAATGGGCCCTTATTCAACTTATACGATTGAAGGACATTTTCTATACACCGCAGGCCAATT ACCCCTTAATCCAGTGACAGGTCAATTGTCAGATGGTTTTGAGGCACAGTGTCGCCAGGTTTTTGTTAATTTACAATCTA TTTTGGCAGAGCAAAAGTTGGACTTGAATCATATCTATAAGCTAAATGTGTATTTAACAGATGTGACCAATGTGGAAATA TTAAATCATGTCATGACTGATTTGTTTGAAGAGCCCTACCCTGTTCGGACAGCGGTTCAAGTGTCGGCGCTTCCTTTGCA AGCTTTGATTGAAGTCGAAGCTGTCGCCAGAGTGAAGCAGTTATAG
Upstream 100 bases:
>100_bases CACCTTAATAATAATTTTTTATCAAAAAGAGAATTTATTATTGACTGTGAATGCGGTTTCCTGTAAAATTTAACTATATT ATCAATGAGGAGGTTCGTAT
Downstream 100 bases:
>100_bases TGTCTTATGTAATGAGATAGATTGGTGGAATAGATTATGGATATTATTATTGGAACAAGTCTTTTGATTCTTGTTTTAGC TATTTTTAGCTTGTTTAACT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 121; Mature: 121
Protein sequence:
>121_residues MKSYPEPMGPYSTYTIEGHFLYTAGQLPLNPVTGQLSDGFEAQCRQVFVNLQSILAEQKLDLNHIYKLNVYLTDVTNVEI LNHVMTDLFEEPYPVRTAVQVSALPLQALIEVEAVARVKQL
Sequences:
>Translated_121_residues MKSYPEPMGPYSTYTIEGHFLYTAGQLPLNPVTGQLSDGFEAQCRQVFVNLQSILAEQKLDLNHIYKLNVYLTDVTNVEI LNHVMTDLFEEPYPVRTAVQVSALPLQALIEVEAVARVKQL >Mature_121_residues MKSYPEPMGPYSTYTIEGHFLYTAGQLPLNPVTGQLSDGFEAQCRQVFVNLQSILAEQKLDLNHIYKLNVYLTDVTNVEI LNHVMTDLFEEPYPVRTAVQVSALPLQALIEVEAVARVKQL
Specific function: Anaerobic degradation of L-threonine to propionate. [C]
COG id: COG0251
COG function: function code J; Putative translation initiation inhibitor, yjgF family
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the RutC family [H]
Homologues:
Organism=Homo sapiens, GI5032215, Length=113, Percent_Identity=34.5132743362832, Blast_Score=80, Evalue=3e-16, Organism=Escherichia coli, GI87082213, Length=115, Percent_Identity=33.0434782608696, Blast_Score=77, Evalue=3e-16, Organism=Escherichia coli, GI87082396, Length=118, Percent_Identity=32.2033898305085, Blast_Score=75, Evalue=1e-15, Organism=Caenorhabditis elegans, GI25148896, Length=112, Percent_Identity=38.3928571428571, Blast_Score=87, Evalue=3e-18, Organism=Caenorhabditis elegans, GI71982075, Length=112, Percent_Identity=38.3928571428571, Blast_Score=87, Evalue=3e-18, Organism=Caenorhabditis elegans, GI71982068, Length=112, Percent_Identity=38.3928571428571, Blast_Score=86, Evalue=3e-18, Organism=Saccharomyces cerevisiae, GI6322138, Length=112, Percent_Identity=33.9285714285714, Blast_Score=74, Evalue=7e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013813 - InterPro: IPR006175 - InterPro: IPR006056 - InterPro: IPR019897 [H]
Pfam domain/function: PF01042 Ribonuc_L-PSP [H]
EC number: NA
Molecular weight: Translated: 13639; Mature: 13639
Theoretical pI: Translated: 4.58; Mature: 4.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSYPEPMGPYSTYTIEGHFLYTAGQLPLNPVTGQLSDGFEAQCRQVFVNLQSILAEQKL CCCCCCCCCCCEEEEEECEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC DLNHIYKLNVYLTDVTNVEILNHVMTDLFEEPYPVRTAVQVSALPLQALIEVEAVARVKQ CCCEEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEHHCCHHHHHHHHHHHHHHC L C >Mature Secondary Structure MKSYPEPMGPYSTYTIEGHFLYTAGQLPLNPVTGQLSDGFEAQCRQVFVNLQSILAEQKL CCCCCCCCCCCEEEEEECEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC DLNHIYKLNVYLTDVTNVEILNHVMTDLFEEPYPVRTAVQVSALPLQALIEVEAVARVKQ CCCEEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEHHCCHHHHHHHHHHHHHHC L C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9679194 [H]