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The map label for this gene is tdcF [C]

Identifier: 15674355

GI number: 15674355

Start: 132417

End: 132782

Strand: Direct

Name: tdcF [C]

Synonym: SPy_0145

Alternate gene names: 15674355

Gene position: 132417-132782 (Clockwise)

Preceding gene: 15674353

Following gene: 15674356

Centisome position: 7.15

GC content: 41.53

Gene sequence:

>366_bases
ATGAAGAGCTACCCAGAACCAATGGGCCCTTATTCAACTTATACGATTGAAGGACATTTTCTATACACCGCAGGCCAATT
ACCCCTTAATCCAGTGACAGGTCAATTGTCAGATGGTTTTGAGGCACAGTGTCGCCAGGTTTTTGTTAATTTACAATCTA
TTTTGGCAGAGCAAAAGTTGGACTTGAATCATATCTATAAGCTAAATGTGTATTTAACAGATGTGACCAATGTGGAAATA
TTAAATCATGTCATGACTGATTTGTTTGAAGAGCCCTACCCTGTTCGGACAGCGGTTCAAGTGTCGGCGCTTCCTTTGCA
AGCTTTGATTGAAGTCGAAGCTGTCGCCAGAGTGAAGCAGTTATAG

Upstream 100 bases:

>100_bases
CACCTTAATAATAATTTTTTATCAAAAAGAGAATTTATTATTGACTGTGAATGCGGTTTCCTGTAAAATTTAACTATATT
ATCAATGAGGAGGTTCGTAT

Downstream 100 bases:

>100_bases
TGTCTTATGTAATGAGATAGATTGGTGGAATAGATTATGGATATTATTATTGGAACAAGTCTTTTGATTCTTGTTTTAGC
TATTTTTAGCTTGTTTAACT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 121; Mature: 121

Protein sequence:

>121_residues
MKSYPEPMGPYSTYTIEGHFLYTAGQLPLNPVTGQLSDGFEAQCRQVFVNLQSILAEQKLDLNHIYKLNVYLTDVTNVEI
LNHVMTDLFEEPYPVRTAVQVSALPLQALIEVEAVARVKQL

Sequences:

>Translated_121_residues
MKSYPEPMGPYSTYTIEGHFLYTAGQLPLNPVTGQLSDGFEAQCRQVFVNLQSILAEQKLDLNHIYKLNVYLTDVTNVEI
LNHVMTDLFEEPYPVRTAVQVSALPLQALIEVEAVARVKQL
>Mature_121_residues
MKSYPEPMGPYSTYTIEGHFLYTAGQLPLNPVTGQLSDGFEAQCRQVFVNLQSILAEQKLDLNHIYKLNVYLTDVTNVEI
LNHVMTDLFEEPYPVRTAVQVSALPLQALIEVEAVARVKQL

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=113, Percent_Identity=34.5132743362832, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI87082213, Length=115, Percent_Identity=33.0434782608696, Blast_Score=77, Evalue=3e-16,
Organism=Escherichia coli, GI87082396, Length=118, Percent_Identity=32.2033898305085, Blast_Score=75, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI25148896, Length=112, Percent_Identity=38.3928571428571, Blast_Score=87, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI71982075, Length=112, Percent_Identity=38.3928571428571, Blast_Score=87, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI71982068, Length=112, Percent_Identity=38.3928571428571, Blast_Score=86, Evalue=3e-18,
Organism=Saccharomyces cerevisiae, GI6322138, Length=112, Percent_Identity=33.9285714285714, Blast_Score=74, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13639; Mature: 13639

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSYPEPMGPYSTYTIEGHFLYTAGQLPLNPVTGQLSDGFEAQCRQVFVNLQSILAEQKL
CCCCCCCCCCCEEEEEECEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
DLNHIYKLNVYLTDVTNVEILNHVMTDLFEEPYPVRTAVQVSALPLQALIEVEAVARVKQ
CCCEEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEHHCCHHHHHHHHHHHHHHC
L
C
>Mature Secondary Structure
MKSYPEPMGPYSTYTIEGHFLYTAGQLPLNPVTGQLSDGFEAQCRQVFVNLQSILAEQKL
CCCCCCCCCCCEEEEEECEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
DLNHIYKLNVYLTDVTNVEILNHVMTDLFEEPYPVRTAVQVSALPLQALIEVEAVARVKQ
CCCEEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEHHCCHHHHHHHHHHHHHHC
L
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]