Definition | Streptococcus pyogenes M1 GAS chromosome, complete genome. |
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Accession | NC_002737 |
Length | 1,852,441 |
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The map label for this gene is ruvB
Identifier: 15674280
GI number: 15674280
Start: 53843
End: 54841
Strand: Direct
Name: ruvB
Synonym: SPy_0038
Alternate gene names: 15674280
Gene position: 53843-54841 (Clockwise)
Preceding gene: 15674279
Following gene: 15674281
Centisome position: 2.91
GC content: 39.64
Gene sequence:
>999_bases ATGGCTAGAATTTTAGACAATAATGTAATGGGAAATGAGGAGTTTTCGGATCGGACTCTTCGCCCTCAATATCTACACGA ATATATTGGACAAGATAAAGTTAAGGAACAATTCGCTATTTTTATAGAAGCAGCTAAAAGACGTGACGAATCTTTAGACC ATGTTTTATTATTTGGACCTCCAGGACTGGGAAAAACAACAATGGCATTTGTGATTGCCAATGAATTGGGAGTTAATTTA AAGCAAACTTCAGGTCCTGCCGTTGAGAAAGCTGGAGATTTGGTAGCTATTTTAAATGAATTAGAACCAGGGGATATTTT GTTTATTGATGAAATTCACCGCATGCCAATGTCTGTCGAGGAAGTACTATATAGTGCTATGGAAGACTTCTATATTGATA TTATGATTGGCGCTGGAGATACTAGTCGTAGTATTCATTTGGATCTGCCTCCATTTACATTGATTGGTGCTACTACACGT GCAGGCATGTTATCTAATCCCCTCAGAGCTCGTTTTGGTATCACTGGTCACATGGAATACTATCAAGAAAAGGATTTGAC AGAGATTGTGGAGCGTACAGCTACTATTTTTGAAATAAAAATAGACCATGAAGCTGCACGGAAATTAGCTTGTCGCAGTA GAGGAACGCCCCGCATTGCTAATCGATTACTAAAACGAGTGCGTGACTATGCTCAAATTATTGGTGATGGCATCATAACG GCTCAAATAACTGATAGAGCTTTGACTATGTTAGATGTTGACCGCGAAGGTCTCGATTACATTGATCAGAAAATTTTACG AACGATGATTGAGATGTATCAGGGAGGGCCAGTTGGTTTGGGGACATTATCTGTGAATATTGCCGAGGAGCGTAATACAG TTGAAGAGATGTATGAACCCTACTTAATTCAAAAAGGCTTTCTCATGCGAACACGAACAGGTCGTGTAGCGACGCAAAAG GCTTATCGTCATCTTGGCTATCCCTATCAAAACACTTAA
Upstream 100 bases:
>100_bases CTATCTTTTAAAGTAGTTCAAGAGCTTAGTGCTGTTGACTGGTGGCGATTATAATAAAAGTAGGCCACTGCTCTCTTTTA CTTTATGTTATAATAGTCTT
Downstream 100 bases:
>100_bases TGATTTTTCAAATCTAAGAAAATTAATCTGAACCTGCTTTTTGTGTTCGGATTTTTTGATAAGTTGACAGAAAATTATTA GATTGATTTCTCCGATATCA
Product: Holliday junction DNA helicase RuvB
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 332; Mature: 331
Protein sequence:
>332_residues MARILDNNVMGNEEFSDRTLRPQYLHEYIGQDKVKEQFAIFIEAAKRRDESLDHVLLFGPPGLGKTTMAFVIANELGVNL KQTSGPAVEKAGDLVAILNELEPGDILFIDEIHRMPMSVEEVLYSAMEDFYIDIMIGAGDTSRSIHLDLPPFTLIGATTR AGMLSNPLRARFGITGHMEYYQEKDLTEIVERTATIFEIKIDHEAARKLACRSRGTPRIANRLLKRVRDYAQIIGDGIIT AQITDRALTMLDVDREGLDYIDQKILRTMIEMYQGGPVGLGTLSVNIAEERNTVEEMYEPYLIQKGFLMRTRTGRVATQK AYRHLGYPYQNT
Sequences:
>Translated_332_residues MARILDNNVMGNEEFSDRTLRPQYLHEYIGQDKVKEQFAIFIEAAKRRDESLDHVLLFGPPGLGKTTMAFVIANELGVNL KQTSGPAVEKAGDLVAILNELEPGDILFIDEIHRMPMSVEEVLYSAMEDFYIDIMIGAGDTSRSIHLDLPPFTLIGATTR AGMLSNPLRARFGITGHMEYYQEKDLTEIVERTATIFEIKIDHEAARKLACRSRGTPRIANRLLKRVRDYAQIIGDGIIT AQITDRALTMLDVDREGLDYIDQKILRTMIEMYQGGPVGLGTLSVNIAEERNTVEEMYEPYLIQKGFLMRTRTGRVATQK AYRHLGYPYQNT >Mature_331_residues ARILDNNVMGNEEFSDRTLRPQYLHEYIGQDKVKEQFAIFIEAAKRRDESLDHVLLFGPPGLGKTTMAFVIANELGVNLK QTSGPAVEKAGDLVAILNELEPGDILFIDEIHRMPMSVEEVLYSAMEDFYIDIMIGAGDTSRSIHLDLPPFTLIGATTRA GMLSNPLRARFGITGHMEYYQEKDLTEIVERTATIFEIKIDHEAARKLACRSRGTPRIANRLLKRVRDYAQIIGDGIITA QITDRALTMLDVDREGLDYIDQKILRTMIEMYQGGPVGLGTLSVNIAEERNTVEEMYEPYLIQKGFLMRTRTGRVATQKA YRHLGYPYQNT
Specific function: The ruvA-ruvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is an helicase that mediates the Holliday
COG id: COG2255
COG function: function code L; Holliday junction resolvasome, helicase subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ruvB family
Homologues:
Organism=Escherichia coli, GI1788167, Length=324, Percent_Identity=57.4074074074074, Blast_Score=388, Evalue=1e-109,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): RUVB_STRP1 (Q9A1Y1)
Other databases:
- EMBL: AE004092 - EMBL: CP000017 - RefSeq: NP_268453.1 - RefSeq: YP_281399.1 - ProteinModelPortal: Q9A1Y1 - SMR: Q9A1Y1 - EnsemblBacteria: EBSTRT00000001514 - EnsemblBacteria: EBSTRT00000027999 - GeneID: 3572881 - GeneID: 900396 - GenomeReviews: AE004092_GR - GenomeReviews: CP000017_GR - KEGG: spy:SPy_0038 - KEGG: spz:M5005_Spy_0035 - GeneTree: EBGT00050000026886 - HOGENOM: HBG339960 - OMA: EKFDGGP - ProtClustDB: PRK00080 - BioCyc: SPYO160490:SPY0038-MONOMER - BioCyc: SPYO293653:M5005_SPY0035-MONOMER - HAMAP: MF_00016 - InterPro: IPR003593 - InterPro: IPR004605 - InterPro: IPR008823 - InterPro: IPR008824 - InterPro: IPR011991 - Gene3D: G3DSA:1.10.10.10 - ProDom: PD005323 - SMART: SM00382 - TIGRFAMs: TIGR00635
Pfam domain/function: PF05491 RuvB_C; PF05496 RuvB_N
EC number: =3.6.4.12
Molecular weight: Translated: 37566; Mature: 37435
Theoretical pI: Translated: 5.30; Mature: 5.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARILDNNVMGNEEFSDRTLRPQYLHEYIGQDKVKEQFAIFIEAAKRRDESLDHVLLFGP CCCEECCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCEEEEECC PGLGKTTMAFVIANELGVNLKQTSGPAVEKAGDLVAILNELEPGDILFIDEIHRMPMSVE CCCCHHHHHHEEHHHHCCEEECCCCCCHHHHCCHHHHHHCCCCCCEEEEEHHHCCCCCHH EVLYSAMEDFYIDIMIGAGDTSRSIHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEY HHHHHHHHCEEEEEEEECCCCCCEEEEECCCEEEEECCHHCCHHCCCHHHHCCCCCCHHH YQEKDLTEIVERTATIFEIKIDHEAARKLACRSRGTPRIANRLLKRVRDYAQIIGDGIIT HHHCCHHHHHHHHCEEEEEEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEE AQITDRALTMLDVDREGLDYIDQKILRTMIEMYQGGPVGLGTLSVNIAEERNTVEEMYEP EEEHHHEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEHHHHHHHHHHHCC YLIQKGFLMRTRTGRVATQKAYRHLGYPYQNT HHHCCCCEEEECCCCHHHHHHHHHCCCCCCCC >Mature Secondary Structure ARILDNNVMGNEEFSDRTLRPQYLHEYIGQDKVKEQFAIFIEAAKRRDESLDHVLLFGP CCEECCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCEEEEECC PGLGKTTMAFVIANELGVNLKQTSGPAVEKAGDLVAILNELEPGDILFIDEIHRMPMSVE CCCCHHHHHHEEHHHHCCEEECCCCCCHHHHCCHHHHHHCCCCCCEEEEEHHHCCCCCHH EVLYSAMEDFYIDIMIGAGDTSRSIHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEY HHHHHHHHCEEEEEEEECCCCCCEEEEECCCEEEEECCHHCCHHCCCHHHHCCCCCCHHH YQEKDLTEIVERTATIFEIKIDHEAARKLACRSRGTPRIANRLLKRVRDYAQIIGDGIIT HHHCCHHHHHHHHCEEEEEEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEE AQITDRALTMLDVDREGLDYIDQKILRTMIEMYQGGPVGLGTLSVNIAEERNTVEEMYEP EEEHHHEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEHHHHHHHHHHHCC YLIQKGFLMRTRTGRVATQKAYRHLGYPYQNT HHHCCCCEEEECCCCHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11296296