Definition | Streptococcus pyogenes M1 GAS chromosome, complete genome. |
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Accession | NC_002737 |
Length | 1,852,441 |
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The map label for this gene is dnaN [H]
Identifier: 15674252
GI number: 15674252
Start: 1742
End: 2878
Strand: Direct
Name: dnaN [H]
Synonym: SPy_0003
Alternate gene names: 15674252
Gene position: 1742-2878 (Clockwise)
Preceding gene: 15674251
Following gene: 15674253
Centisome position: 0.09
GC content: 33.16
Gene sequence:
>1137_bases ATGATTCAATTTTCAATTAATCGCACATTATTTATTCATGCTTTAAATACAACTAAACGTGCTATTAGCACTAAAAATGC CATTCCTATTCTTTCATCAATAAAAATTGAAGTCACTTCTACAGGAGTAACTTTAACAGGGTCTAACGGTCAAATATCAA TTGAAAACACTATTCCTGTAAGTAATGAAAATGCTGGTTTGCTAATTACCTCTCCAGGAGCTATTTTATTAGAAGCTAGT TTTTTTATTAATATTATTTCAAGTTTGCCAGATATTAGTATAAATGTTAAAGAAATTGAACAACACCAAGTTGTTTTAAC CAGTGGTAAATCAGAGATTACCTTAAAAGGAAAAGATGTTGACCAGTATCCTCGTCTACAAGAAGTATCAACAGAAAATC CTTTGATTTTAAAAACAAAATTATTGAAGTCTATTATTGCTGAAACAGCTTTTGCAGCCAGTTTACAAGAAAGTCGTCCT ATTTTAACAGGAGTTCATATTGTATTAAGTAATCATAAAGATTTTAAAGCAGTAGCGACTGACTCTCATCGTATGAGCCA ACGTTTAATCACTTTGGACAATACTTCAGCAGATTTTGATGTAGTTATTCCAAGTAAATCTTTGAGAGAATTTTCAGCAG TATTTACAGATGATATTGAGACCGTTGAGGTATTTTTCTCACCAAGCCAAATCTTGTTCAGAAGTGAACACATTTCTTTT TATACACGCCTCTTAGAAGGAAATTATCCCGATACAGACCGTTTATTAATGACAGAATTTGAGACGGAGGTTGTTTTCAA TACCCAATCCCTTCGCCACGCTATGGAACGTGCCTTCTTGATTTCTAATGCTACTCAAAATGGTACTGTTAAGCTTGAGA TTACTCAAAATCATATTTCAGCTCATGTTAACTCACCTGAGGTTGGTAAGGTAAACGAGGATTTAGATATTGTTAGTCAG TCTGGTAGTGATTTAACTATCAGCTTCAATCCAACTTACCTTATTGAGTCTTTAAAAGCTATTAAAAGTGAAACAGTAAA AATTCATTTCTTATCACCAGTTCGACCATTCACCCTAACACCAGGCGATGAGGAAGAAAGTTTTATCCAATTAATTACAC CAGTACGAACAAACTAA
Upstream 100 bases:
>100_bases ATTTAGTCTTGGATTCTCTCGTTTATTTAGAGTTATCCACTATATACACAAGACCTACTACTACTACTTATTATTATACT TATTAAATAAAGGAGTTCTC
Downstream 100 bases:
>100_bases GTAAGAAAAAGCTCCCTTTTAGGAGTTTTTTTGTTATTATAAATATTAACGATAATATAAGTGGAGAAAAGGGAATGTAT CAAATTGGATCATTTGTTGA
Product: DNA polymerase III subunit beta
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 378; Mature: 378
Protein sequence:
>378_residues MIQFSINRTLFIHALNTTKRAISTKNAIPILSSIKIEVTSTGVTLTGSNGQISIENTIPVSNENAGLLITSPGAILLEAS FFINIISSLPDISINVKEIEQHQVVLTSGKSEITLKGKDVDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRP ILTGVHIVLSNHKDFKAVATDSHRMSQRLITLDNTSADFDVVIPSKSLREFSAVFTDDIETVEVFFSPSQILFRSEHISF YTRLLEGNYPDTDRLLMTEFETEVVFNTQSLRHAMERAFLISNATQNGTVKLEITQNHISAHVNSPEVGKVNEDLDIVSQ SGSDLTISFNPTYLIESLKAIKSETVKIHFLSPVRPFTLTPGDEEESFIQLITPVRTN
Sequences:
>Translated_378_residues MIQFSINRTLFIHALNTTKRAISTKNAIPILSSIKIEVTSTGVTLTGSNGQISIENTIPVSNENAGLLITSPGAILLEAS FFINIISSLPDISINVKEIEQHQVVLTSGKSEITLKGKDVDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRP ILTGVHIVLSNHKDFKAVATDSHRMSQRLITLDNTSADFDVVIPSKSLREFSAVFTDDIETVEVFFSPSQILFRSEHISF YTRLLEGNYPDTDRLLMTEFETEVVFNTQSLRHAMERAFLISNATQNGTVKLEITQNHISAHVNSPEVGKVNEDLDIVSQ SGSDLTISFNPTYLIESLKAIKSETVKIHFLSPVRPFTLTPGDEEESFIQLITPVRTN >Mature_378_residues MIQFSINRTLFIHALNTTKRAISTKNAIPILSSIKIEVTSTGVTLTGSNGQISIENTIPVSNENAGLLITSPGAILLEAS FFINIISSLPDISINVKEIEQHQVVLTSGKSEITLKGKDVDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRP ILTGVHIVLSNHKDFKAVATDSHRMSQRLITLDNTSADFDVVIPSKSLREFSAVFTDDIETVEVFFSPSQILFRSEHISF YTRLLEGNYPDTDRLLMTEFETEVVFNTQSLRHAMERAFLISNATQNGTVKLEITQNHISAHVNSPEVGKVNEDLDIVSQ SGSDLTISFNPTYLIESLKAIKSETVKIHFLSPVRPFTLTPGDEEESFIQLITPVRTN
Specific function: DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The beta chain is required for initiation of replication once it is clamped
COG id: COG0592
COG function: function code L; DNA polymerase sliding clamp subunit (PCNA homolog)
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1790136, Length=347, Percent_Identity=23.6311239193084, Blast_Score=124, Evalue=7e-30,
Paralogues:
None
Copy number: 5954 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001001 - InterPro: IPR022635 - InterPro: IPR022637 - InterPro: IPR022634 [H]
Pfam domain/function: PF00712 DNA_pol3_beta; PF02767 DNA_pol3_beta_2; PF02768 DNA_pol3_beta_3 [H]
EC number: =2.7.7.7 [H]
Molecular weight: Translated: 41885; Mature: 41885
Theoretical pI: Translated: 5.25; Mature: 5.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIQFSINRTLFIHALNTTKRAISTKNAIPILSSIKIEVTSTGVTLTGSNGQISIENTIPV CEEEEECCEEEEEEECCHHHHHCCCCCCCEEEEEEEEEEECCEEEECCCCEEEEECCCCC SNENAGLLITSPGAILLEASFFINIISSLPDISINVKEIEQHQVVLTSGKSEITLKGKDV CCCCCEEEEECCCCEEEEHHHHHHHHHHCCCCEEEHEECCCEEEEEECCCCEEEEECCCC DQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGVHIVLSNHKDFKAVAT CCCCCHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCEEEEC DSHRMSQRLITLDNTSADFDVVIPSKSLREFSAVFTDDIETVEVFFSPSQILFRSEHISF CCHHHHCEEEEEECCCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCEEEEHHHHHH YTRLLEGNYPDTDRLLMTEFETEVVFNTQSLRHAMERAFLISNATQNGTVKLEITQNHIS HHHHHCCCCCCCCCEEEEEECEEEEEEHHHHHHHHHHEEEEECCCCCCEEEEEEEECEEE AHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKSETVKIHFLSPVRPFTLT EECCCCCCCCCCCCHHHHCCCCCEEEEEECCHHHHHHHHHHCCCEEEEEEECCCCCEEEC PGDEEESFIQLITPVRTN CCCCCCHHHEEECCCCCC >Mature Secondary Structure MIQFSINRTLFIHALNTTKRAISTKNAIPILSSIKIEVTSTGVTLTGSNGQISIENTIPV CEEEEECCEEEEEEECCHHHHHCCCCCCCEEEEEEEEEEECCEEEECCCCEEEEECCCCC SNENAGLLITSPGAILLEASFFINIISSLPDISINVKEIEQHQVVLTSGKSEITLKGKDV CCCCCEEEEECCCCEEEEHHHHHHHHHHCCCCEEEHEECCCEEEEEECCCCEEEEECCCC DQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGVHIVLSNHKDFKAVAT CCCCCHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCEEEEC DSHRMSQRLITLDNTSADFDVVIPSKSLREFSAVFTDDIETVEVFFSPSQILFRSEHISF CCHHHHCEEEEEECCCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCEEEEHHHHHH YTRLLEGNYPDTDRLLMTEFETEVVFNTQSLRHAMERAFLISNATQNGTVKLEITQNHIS HHHHHCCCCCCCCCEEEEEECEEEEEEHHHHHHHHHHEEEEECCCCCCEEEEEEEECEEE AHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKSETVKIHFLSPVRPFTLT EECCCCCCCCCCCCHHHHCCCCCEEEEEECCHHHHHHHHHHCCCEEEEEEECCCCCEEEC PGDEEESFIQLITPVRTN CCCCCCHHHEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11463916 [H]