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The map label for this gene is ypdF [C]

Identifier: 13475034

GI number: 13475034

Start: 4870979

End: 4872106

Strand: Direct

Name: ypdF [C]

Synonym: mlr6027

Alternate gene names: 13475034

Gene position: 4870979-4872106 (Clockwise)

Preceding gene: 13475033

Following gene: 13474960

Centisome position: 69.23

GC content: 59.57

Gene sequence:

>1128_bases
ATGCCCTTCCCGAAATCAGAGTATGAGCGCCGGCAGCAAAAGGTCCTTGAAGCGGTAGCGCGCGGCAAGCTCGACGCACT
CCTCGTTACAGCCCATGGCCATCTGCAGTATCTCACCGGGTACAACGGGCGTGGCGCCTATTTCGCGCCGTTCCCGCTGA
TCCTCGTGCCGGGGCGGACGCCGACGTTTGTCATCCGGGAGTATGAATTGGGCGCCGTTCGTGCTGAGAGCTGCGTTGCC
GAGATCGTTACCTATACCGAGCAGAACGACTTTCCCAAAGTGTGCGCCGATGTCCTTCGGCGGTATGGATTGCAGAACAA
AAGTGTAGGCTTTGAGCTAGGTTGCTGGAATCTCGCGCCGGCCGATGTGAGTCGGGTCCAGACGCAACTTCCCGATATGA
AGGTCGCCGACGCGACTCGTCTGGTCGCGTTGGTAGCGGCGGTAAAGACAGAGCTCGAGCTCGAAGCCATGCGCGCCGCG
ATGGTGCTGACGGACGTGGCCGTGCGCACGTTTCAAAACTCATTGCGGGAAGGCGTCACCGAAGCGGAAGTGTCAGCGAA
GATCGACCTGGATGTAAGAAAAGCCGGCGGCGTGCTTCAGGCGCCTGTCACGACTCTGTTGTTCGGCGAGCGAACGAAGC
TGTCACACGGCAGCCCGATGGACCATCCGATCAGAAACGATGAGCCCGCATTCATGGAACTCGGCGGTCTCAAACAGGGC
TACTCCGCAGGACTTGTCCGGTGCGCCGTGCTTGGTCGGCATCCCGAGACCGAATCCTTGCACGCCCTATCAGTGGAAGC
CCTCGAAGCAGTGATAGCCGCGATCAAGCCGGGGGCAACCGCAGGCGAGGTCGATGCTGCCGGGCGAAAGGTGATTGAGC
GATCTCAACGTCCGAAGGTCCTTAACCACCGGGTTGGGTACCAGACAGGTATCAATTGGACAGAGCGCGGCAATCTGAGC
TTGGAGCCGGATGCGACCGATGTCCTCCAGGCCGGAATGACCTTGCATATGCCAATCATCCTGTGCGGAGAGGGCGGCTA
TCTGCTTGGAACCAGCGAGCATGTCTTAGTTACAGAGAGCGGCGCCGAAATACTTAGCGATACACCGCATACCCTTTATC
GCGCGTGA

Upstream 100 bases:

>100_bases
GGCTGAATATGAGCTTCCCCTCACTGATTGACAGTACAATACGACGGTTGAAAAAGGAGTTACGAATACCATGACTATCT
CAGCGATTCCTCTAACGGGG

Downstream 100 bases:

>100_bases
TTTTTGGCAGCGGCGCCGGCGGAAGTCTTTGTAGTTCGTTGGGGATCTTGAAAACCTGGACAGACTGCAGATCTGTGTCA
AATTGGTATCTATAAAAGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 374

Protein sequence:

>375_residues
MPFPKSEYERRQQKVLEAVARGKLDALLVTAHGHLQYLTGYNGRGAYFAPFPLILVPGRTPTFVIREYELGAVRAESCVA
EIVTYTEQNDFPKVCADVLRRYGLQNKSVGFELGCWNLAPADVSRVQTQLPDMKVADATRLVALVAAVKTELELEAMRAA
MVLTDVAVRTFQNSLREGVTEAEVSAKIDLDVRKAGGVLQAPVTTLLFGERTKLSHGSPMDHPIRNDEPAFMELGGLKQG
YSAGLVRCAVLGRHPETESLHALSVEALEAVIAAIKPGATAGEVDAAGRKVIERSQRPKVLNHRVGYQTGINWTERGNLS
LEPDATDVLQAGMTLHMPIILCGEGGYLLGTSEHVLVTESGAEILSDTPHTLYRA

Sequences:

>Translated_375_residues
MPFPKSEYERRQQKVLEAVARGKLDALLVTAHGHLQYLTGYNGRGAYFAPFPLILVPGRTPTFVIREYELGAVRAESCVA
EIVTYTEQNDFPKVCADVLRRYGLQNKSVGFELGCWNLAPADVSRVQTQLPDMKVADATRLVALVAAVKTELELEAMRAA
MVLTDVAVRTFQNSLREGVTEAEVSAKIDLDVRKAGGVLQAPVTTLLFGERTKLSHGSPMDHPIRNDEPAFMELGGLKQG
YSAGLVRCAVLGRHPETESLHALSVEALEAVIAAIKPGATAGEVDAAGRKVIERSQRPKVLNHRVGYQTGINWTERGNLS
LEPDATDVLQAGMTLHMPIILCGEGGYLLGTSEHVLVTESGAEILSDTPHTLYRA
>Mature_374_residues
PFPKSEYERRQQKVLEAVARGKLDALLVTAHGHLQYLTGYNGRGAYFAPFPLILVPGRTPTFVIREYELGAVRAESCVAE
IVTYTEQNDFPKVCADVLRRYGLQNKSVGFELGCWNLAPADVSRVQTQLPDMKVADATRLVALVAAVKTELELEAMRAAM
VLTDVAVRTFQNSLREGVTEAEVSAKIDLDVRKAGGVLQAPVTTLLFGERTKLSHGSPMDHPIRNDEPAFMELGGLKQGY
SAGLVRCAVLGRHPETESLHALSVEALEAVIAAIKPGATAGEVDAAGRKVIERSQRPKVLNHRVGYQTGINWTERGNLSL
EPDATDVLQAGMTLHMPIILCGEGGYLLGTSEHVLVTESGAEILSDTPHTLYRA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M24 family [H]

Homologues:

Organism=Escherichia coli, GI1788728, Length=278, Percent_Identity=30.2158273381295, Blast_Score=91, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000587
- InterPro:   IPR000994 [H]

Pfam domain/function: PF01321 Creatinase_N; PF00557 Peptidase_M24 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 40737; Mature: 40606

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPFPKSEYERRQQKVLEAVARGKLDALLVTAHGHLQYLTGYNGRGAYFAPFPLILVPGRT
CCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEECCCCCCCEECCCCEEEECCCC
PTFVIREYELGAVRAESCVAEIVTYTEQNDFPKVCADVLRRYGLQNKSVGFELGCWNLAP
CEEEEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCEEECCCCCCH
ADVSRVQTQLPDMKVADATRLVALVAAVKTELELEAMRAAMVLTDVAVRTFQNSLREGVT
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
EAEVSAKIDLDVRKAGGVLQAPVTTLLFGERTKLSHGSPMDHPIRNDEPAFMELGGLKQG
HHHHEEEEEEEEHHCCCEECCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCC
YSAGLVRCAVLGRHPETESLHALSVEALEAVIAAIKPGATAGEVDAAGRKVIERSQRPKV
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCH
LNHRVGYQTGINWTERGNLSLEPDATDVLQAGMTLHMPIILCGEGGYLLGTSEHVLVTES
HHHCCCHHCCCCCCCCCCEEECCCHHHHHHCCCEEEEEEEEECCCCEEEECCCEEEEECC
GAEILSDTPHTLYRA
CCHHHCCCCHHHHCC
>Mature Secondary Structure 
PFPKSEYERRQQKVLEAVARGKLDALLVTAHGHLQYLTGYNGRGAYFAPFPLILVPGRT
CCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEECCCCCCCEECCCCEEEECCCC
PTFVIREYELGAVRAESCVAEIVTYTEQNDFPKVCADVLRRYGLQNKSVGFELGCWNLAP
CEEEEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCEEECCCCCCH
ADVSRVQTQLPDMKVADATRLVALVAAVKTELELEAMRAAMVLTDVAVRTFQNSLREGVT
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
EAEVSAKIDLDVRKAGGVLQAPVTTLLFGERTKLSHGSPMDHPIRNDEPAFMELGGLKQG
HHHHEEEEEEEEHHCCCEECCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCC
YSAGLVRCAVLGRHPETESLHALSVEALEAVIAAIKPGATAGEVDAAGRKVIERSQRPKV
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCH
LNHRVGYQTGINWTERGNLSLEPDATDVLQAGMTLHMPIILCGEGGYLLGTSEHVLVTES
HHHCCCHHCCCCCCCCCCEEECCCHHHHHHCCCEEEEEEEEECCCCEEEECCCEEEEECC
GAEILSDTPHTLYRA
CCHHHCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]