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The map label for this gene is yodT [H]

Identifier: 13475005

GI number: 13475005

Start: 4847713

End: 4849035

Strand: Direct

Name: yodT [H]

Synonym: mlr5990

Alternate gene names: 13475005

Gene position: 4847713-4849035 (Clockwise)

Preceding gene: 13475004

Following gene: 13475006

Centisome position: 68.9

GC content: 64.85

Gene sequence:

>1323_bases
ATGAGCCACGTATTTCATCGTTCCGCCCTCTCCGTTCCTCCAATGGCCGTCGCGGCAGACGGGCACTACATCATCGACAT
CAACGGCCGCCGCTATCTCGATGCGTCGGGCGGTGCCGCTGTAAGCTGTATCGGGCATGGCGACCCACGCGTCGTCGCCG
CGGTCGCCGAGCAGATCGCACGGCTCGACTATGCCCACAGCGGCGCCTTCACCAGCCCATCGGCGGAGGAACTCGCCGCC
CATATCTGCGCGGAGGCGGGTCAAGGTATGGCGCGGGTCTATTTCGTCGGATCCGGCTCCGAGGCGGTTGAGGCTGCGAT
CAAGATGGCGAGGCAGTGCCAGATTGAACGGAGGCAGCCGAGCCGCCACGTCGTGATCTCGCGCCGCCTGAGCTACCACG
GCAATACACTCGGCGCCCTAGGCCGATCCGGCAGCGAGACCCGGCGTGCGCCATATGCGCCGATGCTGCAGAAAAGAACG
CAAATCGCGCCCTGCTTTCCCTACCACTATGCCGAGCCGGGAGAGACGCCGGAGGCCTACGGACTTCGTGCGGCGGAGGC
GCTGGAGGCAGAGATTTTGCGGCTTGGCTCGGAGAACGTCGCCGCTTTCCTTGCGGAAACTGTGGTGGGTGCGACGTCCG
GCGCAGTCGTCCCGGCGACCGGCTATTTCCGGCACATCCGCGAGATCTGCGACCGGTACGGCGTGCTGCTGATCTGTGAT
GAGGTGATGTGTGGCGCTCATCGCACCGGCCCTTTCCTCGCCTGCTCGGACGAAGGCGTTTCACCTGATATCGTCACGCT
CGCAAAGGGGCTCGGGGGCGGCTATTTGCCCATCGGCGCGGTCGTCTGCCGGGCTGACGTGCATGATAGCTTTGCCCAAG
GCTCTGGCGCGTTCACCCATGGCCATACTTACATGGCCCATCCCGTGGCTTGCGCCGCCGCGCTCGAGGTCCAGAGGGTG
ATCGTCGACGACAGGTTGGCGGAACGGGTGGTGAGGCAGGGAGCACTGCTCGACGCCGCGCTGCGGGATCGCCTGTCACA
GCATACCTATGTCGGAGACATCCGGGGACGTGGCCTGCTCTATGCCGTCGAACTCGTCGCCGACCGTGAGACGCGAGTTT
CGTTCGATCCTGAAATGCGGCTCGCAGCCCGGATTGGCGCTCAGGCGAAGGGTCGAGGGCTGCTTGTCTATCCGGGAAGC
GGAACTATCGACGGCCTACGGGGTGACCACGTGCTGCTCGCTCCTGCCTATTCCATCGATGCGCAGAGAGTGGGCGAGAT
CGCGGACATCCTCACCGAGGCCATTGATGCGGCGCTTGGCTGA

Upstream 100 bases:

>100_bases
CTCGGAGACAGCGCCACTCGGCGCATCCGTCTTATCGAGGACGCGTACTACGCCAGCGGGACCTACAGCCAGACGAATAA
TCGCAGAAAAGCAGATTAGC

Downstream 100 bases:

>100_bases
AAAAGGCTCTTGGAATCCCTGACCGGCATCGTTGCATTTAACCTCGGCAGCCTGGCGAGGAACAGCTTAGTGCCCTTCAA
TTTCCGTAGCTTGTGCAGTC

Product: hypothetical protein

Products: L-Glutamate; L-Glutamate 5-semialdehyde [C]

Alternate protein names: NA

Number of amino acids: Translated: 440; Mature: 439

Protein sequence:

>440_residues
MSHVFHRSALSVPPMAVAADGHYIIDINGRRYLDASGGAAVSCIGHGDPRVVAAVAEQIARLDYAHSGAFTSPSAEELAA
HICAEAGQGMARVYFVGSGSEAVEAAIKMARQCQIERRQPSRHVVISRRLSYHGNTLGALGRSGSETRRAPYAPMLQKRT
QIAPCFPYHYAEPGETPEAYGLRAAEALEAEILRLGSENVAAFLAETVVGATSGAVVPATGYFRHIREICDRYGVLLICD
EVMCGAHRTGPFLACSDEGVSPDIVTLAKGLGGGYLPIGAVVCRADVHDSFAQGSGAFTHGHTYMAHPVACAAALEVQRV
IVDDRLAERVVRQGALLDAALRDRLSQHTYVGDIRGRGLLYAVELVADRETRVSFDPEMRLAARIGAQAKGRGLLVYPGS
GTIDGLRGDHVLLAPAYSIDAQRVGEIADILTEAIDAALG

Sequences:

>Translated_440_residues
MSHVFHRSALSVPPMAVAADGHYIIDINGRRYLDASGGAAVSCIGHGDPRVVAAVAEQIARLDYAHSGAFTSPSAEELAA
HICAEAGQGMARVYFVGSGSEAVEAAIKMARQCQIERRQPSRHVVISRRLSYHGNTLGALGRSGSETRRAPYAPMLQKRT
QIAPCFPYHYAEPGETPEAYGLRAAEALEAEILRLGSENVAAFLAETVVGATSGAVVPATGYFRHIREICDRYGVLLICD
EVMCGAHRTGPFLACSDEGVSPDIVTLAKGLGGGYLPIGAVVCRADVHDSFAQGSGAFTHGHTYMAHPVACAAALEVQRV
IVDDRLAERVVRQGALLDAALRDRLSQHTYVGDIRGRGLLYAVELVADRETRVSFDPEMRLAARIGAQAKGRGLLVYPGS
GTIDGLRGDHVLLAPAYSIDAQRVGEIADILTEAIDAALG
>Mature_439_residues
SHVFHRSALSVPPMAVAADGHYIIDINGRRYLDASGGAAVSCIGHGDPRVVAAVAEQIARLDYAHSGAFTSPSAEELAAH
ICAEAGQGMARVYFVGSGSEAVEAAIKMARQCQIERRQPSRHVVISRRLSYHGNTLGALGRSGSETRRAPYAPMLQKRTQ
IAPCFPYHYAEPGETPEAYGLRAAEALEAEILRLGSENVAAFLAETVVGATSGAVVPATGYFRHIREICDRYGVLLICDE
VMCGAHRTGPFLACSDEGVSPDIVTLAKGLGGGYLPIGAVVCRADVHDSFAQGSGAFTHGHTYMAHPVACAAALEVQRVI
VDDRLAERVVRQGALLDAALRDRLSQHTYVGDIRGRGLLYAVELVADRETRVSFDPEMRLAARIGAQAKGRGLLVYPGSG
TIDGLRGDHVLLAPAYSIDAQRVGEIADILTEAIDAALG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI4557809, Length=430, Percent_Identity=30.4651162790698, Blast_Score=154, Evalue=2e-37,
Organism=Homo sapiens, GI37574042, Length=379, Percent_Identity=30.0791556728232, Blast_Score=137, Evalue=2e-32,
Organism=Homo sapiens, GI226442705, Length=379, Percent_Identity=29.5514511873351, Blast_Score=132, Evalue=8e-31,
Organism=Homo sapiens, GI13994255, Length=452, Percent_Identity=28.3185840707965, Blast_Score=132, Evalue=9e-31,
Organism=Homo sapiens, GI284507298, Length=342, Percent_Identity=31.2865497076023, Blast_Score=130, Evalue=2e-30,
Organism=Homo sapiens, GI226442709, Length=346, Percent_Identity=29.4797687861272, Blast_Score=123, Evalue=4e-28,
Organism=Homo sapiens, GI24119277, Length=441, Percent_Identity=28.3446712018141, Blast_Score=116, Evalue=4e-26,
Organism=Escherichia coli, GI145693181, Length=360, Percent_Identity=33.0555555555556, Blast_Score=187, Evalue=8e-49,
Organism=Escherichia coli, GI1789016, Length=432, Percent_Identity=31.9444444444444, Blast_Score=167, Evalue=9e-43,
Organism=Escherichia coli, GI1788044, Length=417, Percent_Identity=29.0167865707434, Blast_Score=141, Evalue=7e-35,
Organism=Escherichia coli, GI1789759, Length=359, Percent_Identity=31.1977715877437, Blast_Score=140, Evalue=2e-34,
Organism=Escherichia coli, GI1787560, Length=438, Percent_Identity=31.0502283105023, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI1786991, Length=371, Percent_Identity=30.188679245283, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI1786349, Length=328, Percent_Identity=30.4878048780488, Blast_Score=96, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI25144271, Length=427, Percent_Identity=27.4004683840749, Blast_Score=153, Evalue=1e-37,
Organism=Caenorhabditis elegans, GI71992977, Length=444, Percent_Identity=29.954954954955, Blast_Score=152, Evalue=4e-37,
Organism=Caenorhabditis elegans, GI32564660, Length=460, Percent_Identity=28.0434782608696, Blast_Score=142, Evalue=3e-34,
Organism=Caenorhabditis elegans, GI25144274, Length=323, Percent_Identity=27.8637770897833, Blast_Score=125, Evalue=6e-29,
Organism=Saccharomyces cerevisiae, GI6324432, Length=421, Percent_Identity=26.3657957244656, Blast_Score=144, Evalue=3e-35,
Organism=Saccharomyces cerevisiae, GI6323470, Length=453, Percent_Identity=27.5938189845475, Blast_Score=135, Evalue=2e-32,
Organism=Drosophila melanogaster, GI21357415, Length=438, Percent_Identity=30.365296803653, Blast_Score=167, Evalue=1e-41,
Organism=Drosophila melanogaster, GI28574759, Length=446, Percent_Identity=30.0448430493274, Blast_Score=150, Evalue=1e-36,
Organism=Drosophila melanogaster, GI161085790, Length=443, Percent_Identity=30.0225733634311, Blast_Score=150, Evalue=2e-36,
Organism=Drosophila melanogaster, GI21356575, Length=446, Percent_Identity=27.8026905829596, Blast_Score=135, Evalue=5e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005814
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00202 Aminotran_3 [H]

EC number: 2.6.1.13 [C]

Molecular weight: Translated: 46692; Mature: 46560

Theoretical pI: Translated: 6.65; Mature: 6.65

Prosite motif: PS00600 AA_TRANSFER_CLASS_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHVFHRSALSVPPMAVAADGHYIIDINGRRYLDASGGAAVSCIGHGDPRVVAAVAEQIA
CCCCCCCHHCCCCCEEEECCCEEEEEECCCEEEECCCCCEEEEECCCCCHHHHHHHHHHH
RLDYAHSGAFTSPSAEELAAHICAEAGQGMARVYFVGSGSEAVEAAIKMARQCQIERRQP
HHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHCCC
SRHVVISRRLSYHGNTLGALGRSGSETRRAPYAPMLQKRTQIAPCFPYHYAEPGETPEAY
CCEEEEEEHHHHCCCCHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHH
GLRAAEALEAEILRLGSENVAAFLAETVVGATSGAVVPATGYFRHIREICDRYGVLLICD
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHHHHCCEEEEEC
EVMCGAHRTGPFLACSDEGVSPDIVTLAKGLGGGYLPIGAVVCRADVHDSFAQGSGAFTH
HHHHCCCCCCCEEEECCCCCCCHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHCCCCCEEC
GHTYMAHPVACAAALEVQRVIVDDRLAERVVRQGALLDAALRDRLSQHTYVGDIRGRGLL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCEEECCCCCCEE
YAVELVADRETRVSFDPEMRLAARIGAQAKGRGLLVYPGSGTIDGLRGDHVLLAPAYSID
EEEEEHHCCCCCCCCCCCHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCEEEEEECCCCC
AQRVGEIADILTEAIDAALG
HHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SHVFHRSALSVPPMAVAADGHYIIDINGRRYLDASGGAAVSCIGHGDPRVVAAVAEQIA
CCCCCCHHCCCCCEEEECCCEEEEEECCCEEEECCCCCEEEEECCCCCHHHHHHHHHHH
RLDYAHSGAFTSPSAEELAAHICAEAGQGMARVYFVGSGSEAVEAAIKMARQCQIERRQP
HHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHCCC
SRHVVISRRLSYHGNTLGALGRSGSETRRAPYAPMLQKRTQIAPCFPYHYAEPGETPEAY
CCEEEEEEHHHHCCCCHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHH
GLRAAEALEAEILRLGSENVAAFLAETVVGATSGAVVPATGYFRHIREICDRYGVLLICD
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHHHHCCEEEEEC
EVMCGAHRTGPFLACSDEGVSPDIVTLAKGLGGGYLPIGAVVCRADVHDSFAQGSGAFTH
HHHHCCCCCCCEEEECCCCCCCHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHCCCCCEEC
GHTYMAHPVACAAALEVQRVIVDDRLAERVVRQGALLDAALRDRLSQHTYVGDIRGRGLL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCEEECCCCCCEE
YAVELVADRETRVSFDPEMRLAARIGAQAKGRGLLVYPGSGTIDGLRGDHVLLAPAYSID
EEEEEHHCCCCCCCCCCCHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCEEEEEECCCCC
AQRVGEIADILTEAIDAALG
HHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: Pyridoxal Phosphate. [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: 2-Oxoglutarate; Ornithine [C]

Specific reaction: 2-Oxoglutarate + Ornithine --> L-Glutamate + L-Glutamate 5-semialdehyde [C]

General reaction: Amino group transfer [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]